Why herd immunity to COVID-19 is reached much earlier than thought – update

By Nic Lewis

I showed in my May 10th article Why herd immunity to COVID-19 is reached much earlier than thought that inhomogeneity within a population in the susceptibility and in the social-connectivity related infectivity of individuals would reduce, in my view probably very substantially, the herd immunity threshold (HIT), beyond which an epidemic goes into retreat. I opined, based on my modelling, that the HIT probably lay somewhere between 7% and 24%, and that evidence from Stockholm County suggested it was around 17% there, and had been reached. Mounting evidence supports my reasoning.[1]

I particularly want to highlight an important paper published on July 24th “Herd immunity thresholds estimated from unfolding epidemics” (Aguas et al.).[2] The author team is much the same as that of the earlier theoretical paper (Gomes et al.[3]) that prompted my May 10th article.

Aguas et al. used a SEIR compartmental epidemic model modified to allow for inhomogeneity, similar to the model I used although they also considered further variants. They fitted their models to scaled daily new cases data from four European countries for which disaggregated regional case data was also readily available. In all cases they found a better fit from their models incorporating heterogeneity to the standard homogeneous assumption SEIR model. They found that:

Homogeneous models systematically fail to fit the maintenance of low numbers of cases after the relaxation of social distancing measures in many countries and regions.

Aguas et al. estimate the HIT at between 6% and 21% for the countries in their analysis – very much in line with the range I suggested in May. They also found that their HIT estimates were robust to various changes in their model specification. By contrast, if the population were homogeneous or were vaccinated randomly, the estimated HIT would have been around 65% –80%, in line with the classical formula, {1 – 1/R0}, where R0 is the epidemic’s basic reproduction number.[4]

Aguas et al.’s Figure 3, reproduced below, shows how the HIT reduces with increasing variation either in susceptibility (given exposure) or in connectivity, which affects both an individual’s susceptibility (via altering exposure to infection) and infectivity. The coloured dots and vertical lines show the inferred position of each of the four countries they analysed in each of these (separately modelled) cases.

Aguas et al. Fig. 3 Herd immunity threshold with gamma-distributed susceptibility (top) or connectivity related exposure to infection (bottom). Curves generated with the SEIR model (Equation 1-4) assuming values of R0 estimated for the study countries assuming gamma-distributed: susceptibility [top]; connectivity (and hence exposure to infection) [bottom]. Herd immunity thresholds (solid curves) are calculated according to the formula 1 − (1/R0)1/(1 + CV^2) for heterogeneous susceptibility and 1 − (1/R0)1/(1 + 2 CV^2) for heterogeneous connectivity. Final sizes of the corresponding unmitigated epidemics are also shown (dashed).

As Aguas et al. say in their Abstract:

These findings have profound consequences for the governance of the current pandemic given that some populations may be close to achieving herd immunity despite being under more or less strict social distancing measures.

The underlying reason for the classical formula being inapplicable is, as they say:

More susceptible and more connected individuals have a higher propensity to be infected and thus are likely to become immune earlier. Due to this selective immunization by natural infection, heterogeneous populations require less infections to cross their herd immunity threshold than suggested by models that do not fully account for variation.

The Imperial College COVID-19 model (Ferguson et al.[5]) is a prime example of one that does not adequately account for variation in individual susceptibility and connectivity.

Aguas et al. point out that consideration of heterogeneity in the transmission of respiratory infections has traditionally focused on variation in exposure summarized into age-structured contact matrices. They showed that, besides this approach typically ignoring differences in susceptibility given virus exposure, the aggregation of individuals into age groups leads to much lower variability than that they found from fitting the data. The resulting models appeared to differ only moderately from homogeneous approximations.

A key reason for variability in susceptibility to COVID-19 given exposure to the SARS-CoV-2 virus causing is that the immune systems of a substantial proportion (35% to 80%) of unexposed individuals have T-cells, circulating antibodies or other components that are cross-reactive to SARS-CoV-2 and can be expected to provide substantial resistance to it.[6] [7] [8] [9] Such components likely arise from past exposure to common cold or other coronaviruses, or to influenza.[10] Not being specific to SARS-CoV-2, and typically not being antibodies, such immune system components are not normally detected in seroprevalence or other tests for immunity to SARS-CoV-2.

I will end with a follow up to my June 28th article focusing on Sweden. In it, I concluded that it was likely the HIT had been surpassed in the three largest Swedish regions, and in the country as a whole, by the end of April notwithstanding that COVID-19-specific antibodies had only been detected in 6.3% of the population.[11] I also projected, based on their declining trend, that total COVID-19 deaths would likely only be about 6,400. Subsequent developments support those conclusions. Swedish COVID-19 deaths have continued to decline, notwithstanding a return to more travel and less social distancing, and are now down to 10 to 15 a day. According to the latest Financial Times analysis,[12] excess mortality in Sweden over 2020 to date was 5,500, or 24%. That is only about half the excess mortality percentage for the UK (45%), Italy (44%) and Spain (56%), and is also lower than for France (31%), the Netherlands (27%) and Switzerland (26%), despite Sweden not having imposed a lockdown or shut primary schools. Moreover, total mortality in Sweden over the last 24 months is now lower than over the previous 24 months, despite an upward trend in the old age population.

Nicholas Lewis                                               27 July 2020

Further update 31 July 2020

Another important paper has now been published on the role of inhomogeneity within a population in the social-connectivity related susceptibility and infectivity of individuals and in biological susceptibility: “Persistent heterogeneity not short-term overdispersion determines herd immunity to COVID-19” (Tkachenko et al.)[13]. The paper’s mathematical/statistical analysis is excellent.[14] Their method of estimating the role of population inhomogeneity in lowering the herd immunity threshold seems reasonable in principle.[15]

However, they estimated the effect of inhomogeneity during lockdowns, and assumed that the effect is the same in other circumstances. But a key effect of social distancing measures, including public events bans, bar and restaurant closures, etc. as well as full lockdowns, is to heavily reduce the number of contacts by the most connected people that are capable of transmitting infection. For people with few social connections, such measures will have a proportionately much smaller effect. So the effect in more normal circumstances of population inhomogeneity in social-connectivity, which appears to be more important than inhomogeneity in biological susceptibility, is bound to be underestimated, quite possibly substantially, by their approach.

Nevertheless, their best fit to New York City COVID-19 data during lockdown gives an estimate of an inhomogeneity factor[16] λ of 4.5.[17] An alternative estimation method based on a cross-sectional regression across US States gives a λ estimate of 5.3.[18]

A middle of the range λ value of 4.9 implies a HIT of 20% if R0 = 3.0 (16.4% if R0 = 2.4; 24.6% if R0 = 4; 28.0% if R0 = 5). It also equates, if all the inhomogeneity is social-connectivity related, to a coefficient of variation (CV)[19] of 1.4 – which is the geometrical mean of the two CV values (1 and 2) that I used in my original article.

Estimating λ from fits to the NYC or Chicago data prior to lockdown implies much higher CV estimates, in the range 2.4 to 2.9 if all inhomogeneneity is social-connectivity related, in non-lockdown circumstances. The corresponding estimates for nine of the worst hit US States range from 1.9 to 3.4.[20]


[1] One example, further supporting my superspreader-based evidence of variability in social connectivity, is Miller et al: Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel medRxiv 22 May 2020  https://doi.org/10.1101/2020.05.21.20104521 This paper shows that 1-10% of infected individuals caused 80% of infections. That points to variability in social connectivity related susceptibility and infectivity quite likely being higher than I modelled .

[2] Aguas, R. and co-authors: Herd immunity thresholds estimated from unfolding epidemics” medRxiv 24 July 2020 https://doi.org/10.1101/2020.07.23.20160762

[3] Gomes, M. G. M., et al.: Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold. medRxiv 2 May 2020. https://www.medrxiv.org/content/10.1101/2020.04.27.20081893v1

[4] The basic reproduction number of an epidemic, R0, measures how many people, on average, each infected individual infects at the start of the epidemic. If R0 exceeds one, the epidemic will grow, exponentially at first. But, assuming recovered individuals are immune, the pool of susceptible individuals shrinks over time and the current reproduction number falls. The proportion of the population that have been infected at the point where the current reproduction number falls to one is the ‘herd immunity threshold’ (HIT). Beyond that point the epidemic is under control, and shrinks.

[5] Neil M Ferguson et al.: Impact of non-pharmaceutical interventions (NPIs) to reduce COVID-19 mortality and healthcare demand. Imperial College COVID-19 Response Team Report 9, 16 March 2020, https://spiral.imperial.ac.uk:8443/handle/10044/1/77482

[6] Grifoni, A.et al.: Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals. Cell 11420, 2020 https://doi.org/10.1016/j.cell.2020.05.015

[7] Braun, J., et al.: Presence of SARS-CoV-2 reactive T cells in COVID-19 patients and healthy donors. medRxiv 22 April 2020 https://www.medrxiv.org/content/10.1101/2020.04.17.20061440v1.

[8] Le Bert, N. et al.: Different pattern of pre-existing SARS-COV-2 specific T cell immunity in SARS-recovered and uninfected individuals. bioRxiv 27 May 2020. https://doi.org/10.1101/2020.05.26.115832

[9] Nelde, A. et al.: SARS-CoV-2 T-cell epitopes define heterologous and COVID-19-induced T-cell recognition. ResearchSquare 16 June 2020.  https://www.researchsquare.com/article/rs-35331/v1

[10] Lee, C., Koohy, H., et al.: CD8+ T cell cross-reactivity against SARS-CoV-2 conferred by other coronavirus strains and influenza virus. bioRxiv 20 May 2020. https://doi.org/10.1101/2020.05.20.107292.

[11] Such seroprevalence is likely to significantly understate the proportion of the population who have had COVID-19, since asymptomatic or mild disease often results in undetectably low antibody levels (Long, Q. X. et al.: Clinical and immunological assessment of asymptomatic SARS-CoV-2 infections. Nat Med. 18 June 2020 https://doi.org/10.1038/s41591-020-0965-6 . Such patients will nevertheless be immune to reinfection (Sekine, K. et al.: Robust T cell immunity in convalescent individuals with asymptomatic or mild COVID-19. bioRxiv 29 June 2020 https://doi.org/10.1101/2020.06.29.174888).965-6

[12] https://www.ft.com/content/a26fbf7e-48f8-11ea-aeb3-955839e06441. Data updated to 13 July

[13] Tkachenko, A.V. et al.: Persistent heterogeneity not short-term overdispersion determines herd immunity to COVID-19. medRxiv 29 July 2020 https://doi.org/10.1101/2020.07.26.20162420

[14] I think its title gives a slightly misleading impression, although that issue is not central to their paper. It is in fact “persistent” heterogeneity that causes “short-term” overdispersion, albeit that over a short period random variability will have a significant influence. I’m unconvinced by their argument that estimating social-connectivity related susceptibility and infectivity from overdispersion in transmission statistics is likely to lead to significant bias, provided that estimation is based on large-scale transmission and not just a few superspreader events.

[15] Doing so involves dependency on an estimate of the infection fatality rate, but their IFR-inferred proportion of the New York City population that had been infected  by early June 2020 looks reasonable, based on the NYS survey suggesting 22.7% of NYC residents had been infected by late March and the ratio of cumulative COVID-19 deaths 23 days later.

[16] They term their λ an “immunity factor”, but it is only partly related to biological immunity.  If the causative inhomogeneity is related to biological immunity, λ = 1 + CV2, whereas if it is related to social connectivity (which affects infectivity as well as susceptibility) λ = 1 + 2CV2.

[17] They also obtian a similar estimate for Chicago, but based on a much narrower range of data.

[18]  Or λ = 4.7 for a selected subset of States.

[19] The ratio of the standard deviation to the mean of a random  variable.

[20] I have excluded NY State data, as their curve for that State shows abnormal behaviour, quite likely due to the early epidemic data being strongly dominated by NY City

Originally posted here, where a pdf copy is also available


 

 

829 responses to “Why herd immunity to COVID-19 is reached much earlier than thought – update

  1. Curious George

    How can we influence the Coefficient of Variation in Fig. 3?

    • Lockdown and social distancing measures very likely reduce the connectivity-related Coefficient of Variation, reducing their effectiveness especially if not applied right at the start of an epidemic (being, in this case, January 2020).

    • Rebecca Respect2Glory

      Look at what we call ‘the common flu’ numbers just as you did COVID-19, and then consider how the Corrupt Ones have bumped up the numbers, by reassigning ‘what is the cause of death’ at the morgue, and how many more people have died in the Corrupt Controlled Hospitals, while so many other hospitals have empty beds in their intensive care units.

      It is absolutely absurd to claim that a CV survivor who died in an auto accident as a COVID-19 DEATH.

      We also just found out that people who are being retested for CV, as they want to return to work and cannot work until they test negative, are being counting as another positive person.

      This is NOT just a cruel joke. Anyone caught in criminal activity that causes or is linked to deaths or people is murder, and they need to be put down. We cannot allow Hitler-like beings to exist with their evil power over people, nor allow them to teach their evil ways to another person.

  2. This post is consistent with the study coming out of Oxford. One of the co-authors gave an informative interviews with views of the implications for health policies. The interview with Sunetra Gupta is at:
    https://reaction.life/we-may-already-have-herd-immunity-an-interview-with-professor-sunetra-gupta/
    My synopsis is : Herd Immunity Already?
    https://rclutz.wordpress.com/2020/07/24/herd-immunity-already/

    The paper is The impact of host resistance on cumulative mortality and the threshold of herd immunity for SARS-CoV-2.
    https://www.medrxiv.org/content/10.1101/2020.07.15.20154294v1

    • UK-Weather Lass

      The interview with Sunetra Gupta is, IMO, a must read full of loaded wisdom and a very different perspective about infectious disease. This quote especially caught my attention and refers predominately to western attitudes.

      “What’s disappointed me about the way this has been approached is it has been approached along a single axis, which, if you like, is a scientific one. Even within that context, you could argue that it’s too one-dimensional, so we’re not thinking about what’s happening with other infectious diseases or how many people are going to die of cancer.
      That’s the axis of disease, but then there’s the socioeconomic axis, which has been ignored. But there’s a third, aesthetic access, which is about how we want to live our lives. We are closing ourselves off not just to the disease, but to other aspects of being human.”

      This is close to how I have felt about the whole experience of Covid-19 as compared to what went on before it. Why have we become so skewed in our thinking if that is what has happened?

      • ukweather lass
        as you will be aware very many of us have been saying exactly the same thing for many months. we have wildly over reacted and in the process ignored the economy, our own financial health, mental health, ability to work, interact, go to cultural events and all the other things that make life worth while.

        the govt has looked on it from a very narrow perspective but things like greater deaths through cancer, heart disease or huge economic problems causing other concerns such as unemployment or a reduction in budgets , seem to have not been considered.

        mind you this is all small beer compared to what will be unleashed if we follow the crazies who want to see zero carbon by 2025 or even 2030 or even 2035….

        tonyb

      • ” or huge economic problems causing other concerns such as unemployment or a reduction in budgets , seem to have not been considered.”

        Those concerns are unwarranted. To get around that we just need to shed the belief in Neoclassical Political Economy and adopt something more Modern.

        “At the start of the crisis, I argued that the national governments, which issue their own currency, could take up the entire wage and profits bill if it wanted to – to reduce the ‘economic costs’ of the lockdowns to close to zero.

        Unemployment did not have to rise.

        Businesses did not have to be destroyed.

        If we had an enforceable lockdown and eliminated the virus, with our borders strictly controlled until a credible health solution was introduced, then no economic damage was necessary.

        Foster just adopts the neoliberal bias, that dominates the mainstream economics discipline, in assuming that if we have lockdowns there will be devastating GDP losses and elevated unemployment.

        Once you understand the fiscal capacity of the Government then the concept of a trade-off seems rather flawed.

        The economic losses that have been recorded to date – and they are massive – were avoidable.”

        http://bilbo.economicoutlook.net/blog/?p=45472

      • J:

        “…part of the explanation for that phenomenon that you selectively point to is because Trump deliberately provokes “outrage” so he can outrage mine as a way to claim victimhood and increase support among his self-victimizing cult members.”

        So Trump is a Democrat. How do you like those apples? He uses the enemies tactics against them. That must be hard to swallow. He didn’t like the media, so he used Trump Media. It appears as derangement because they argue that you can’t do to us what we did to you.

        Calling people cult members is missing what’s happening. The Democrats are just as much a cult but more sheepish in general. The Democrats didn’t adapt and they lost in 2016. Are you missing the lefties leaving the party?

        Urban cities are burning. Did you get the message yet? No. When Waco burned, there were still true believers.

    • Early on, someone suggested tthis pandemic is different because it is the first one with social media. And of course 24/7 cable news:
      https://rclutz.files.wordpress.com/2020/03/covid19-media-mentions-2.png

      • This is the first pandemic which involves Donald Trump in an election year. I have found that the best way to interpret national news events and the degree of national media coverage is to ask “does this help or hurt Trump’s chances for re-election”. If it hurts Trump, it becomes the topic of the hour and is breathlessly pushed until something more damaging comes along. Anything helpful to Trump never sees the light of day. Try looking back at the news events of the last couple of years through this prism and determine if I’m just being paranoid. This year, as time runs out before November, the “damage Trump” narratives have begun to stack upon each other in a last ditch effort.

      • What you said. I made a comment recently on a facebook friend’s page, on the topic of nationalism and patriotism:

        “The nation-state is a relatively new invention comprising today’s form of government of a country, which originated in the the idea of the homeland, a people connected to a place, I guess what “un pays” means in French.

        Henry Kissinger some years ago remarked that the problem for modern nation-states is they are too small to protect their citizens from global economic and political forces (not to mention pandemics), but too big and diverse to provide a sense of belonging to an ethnic community. Despite what you say about the US, until recently it had excelled in creating an American tribe out of immigrants coming from everywhere, but desiring to be one people; yes, the famous “melting pot” where being an American was the glue holding things together.

        Now “identity politics” taught in academia is pitting groups against one another in a class struggle to secure rights for one tribe at the expense of others. Defiance against respect for the flag and anthem is the antithesis of patriotism: love of country, including the land and the people.”
        Someone replied:
        “Bling nationalism was a contributing factor to some of the greatest evils of the 20th century. Sad to see a governing party trying to stoke those same emotions.”

        There it is: If Trump is patriotic, then it is like fascist or communist nationalism, and is to be mourned.

      • > If it hurts Trump, it becomes the topic of the hour and is breathlessly pushed until something more damaging comes along. Anything helpful to Trump never sees the light of day

        This, of course, is only true of you have a very limited definition of “the national media,” crafted so as to confirm a bias (and even there, the description is exaggerated even if it gets the basic pattern correctly).

        And if course, part of the explanation for that phenomenon that you selectively point to is because Trump deliberately provokes “outrage” so he can outrage mine as a way to claim victimhood and increase support among his self-victimizing cult members.

      • Little joshie is a TDS sufferer and TDS denier.

      • TDS exists, Don, just as did ODS and BDS. Of course it does.

        The cult exists also. But you’ll never admit that, will you? That’s the first sign of a cult member.

    • Breaking news. Very consistent with Dr. Gupta’s study, a new research reports SARS responsive CD4 T-cells in a significant portion of the healthy population.
      “We investigated SARS-CoV-2 spike glycoprotein (S)-reactive CD4+  T cells in peripheral blood of patients with COVID-19 and SARS-CoV-2-unexposed healthy donors (HD). We detected SARS-CoV-2 S-reactive CD4+ T cells in 83% of patients with COVID-19 but also in 35% of HD.”
      “Our study reveals pre-existing cellular SARS-CoV-2-cross-reactivity in a substantial proportion of SARS-CoV-2 seronegative HD. This finding might have significant epidemiological implications regarding herd immunity thresholds and projections for the COVID-19 pandemic.”
      Study is here: https://www.nature.com/articles/s41586-020-2598-9_reference.pdf
      My synopsis: https://rclutz.wordpress.com/2020/07/29/sars-cross-immunity-from-t-cells/
      https://i2.wp.com/theactivescientist.com/wp-content/uploads/2020/03/T-cell-resps.jpg?resize=768%2C459&ssl=1

  3. Nic:

    The study you highlighted was based on four European countries. Meanwhile in several of the hotter climate US states virus infections and deaths have surged. Why is this? Has herd immunity been delayed there, is there more homogeneity?

    • it is speculated that the increase in Florida, Texas, AZ is due to moving into air conditioned space

      • Other speculations include similar increases in cases on the Mexican side of the border, and transmissions resulting from ongoing street protests after Mar 25. In any case, the new cases are not yet affecting the death rates. Of course, they may be a delayed increase, or it may be that younger people now infected are more resilient.
        https://rclutz.files.wordpress.com/2020/07/cases-vs-deaths-4-states.gif

      • Error: the protests started after May 25, not March.

      • > . In any case, the new cases are not yet affecting the death rates.

        How do you know this?

        I see a marked increase in deaths (and hospitalizations) in many locations where vases increased, after a lag of around 3 weeks.

      • …cases…

        And that’s with a marginal improvement in therapeutics.

    • Yes, it would be good to get an expert opinion on why deaths in hot states are surging as it is continually claimed the virus does not thrive in these conditions.

      Is air conditioning a feasible reason, as that would imply that ac was the norm all day and all night in all homes and offices. Is that so? What temperature is the air cooled to? Does the ac itself cause problems through recirculating bad air within an apartment for examples?

      Yes I have also heard the immigration over the border with Mexico claim. Again is that credible? PIs there a definite spike as a result of BLM and other protests?

      If the virus is not killed by warmth the myth needs to be busted. If there are other causes that cancel out the reality that warmth does kill the virus we need to know about them

      Tonyb

      • tonyb, the logic is that, yes, the sun and hot temperatures outside kill the virus. Indoor, cool, humid spaces help the virus, along with (low quality) AC systems recycling air loaded with virus.

      • People are using air conditioning in New York and New Jersey and Washington DC, and Connecticut. No spikes there.

      • I think the main ways it is spreading in the South only indirectly involves air conditioning. It is spreading in churches, restaurants, and bars where people are not wearing masks. Lots of people in close proximity and opening their mouths a lot.

      • Joshua | July 27, 2020 at 6:11 pm |
        “People are using air conditioning in New York and New Jersey and Washington DC, and Connecticut. No spikes there.“

        Bit hard to get a spike in New York, they have all had it.
        Also the number of deaths per number of infections keeps going down overall?

      • angech –

        > Bit hard to get a spike in New York, they have all had it.

        I live in NY State. Seroprevalence here is quite low. Much lower than many places spiking in Florida, for example. Rate of transmission is very low here. Among the lowest in the country. It hit mid-90s today. Very humid.

        > Also the number of deaths per number of infections keeps going down overall?

        Seem to be many protential explanations. Prolly some combo thereof. What is your point?

      • Don Monfort

        The vulnerable, under the regime of capo di tuti Cuomo and underboss Bill “the commie” De Blasio, and especially in AOC’s deadly and dingy Congressional district have already been culled.

      • thanks for the responses. being outside in the open helps anyway so virus spread would be almost non existent in the heat outdoors. but then people are compromising themselves with cool humid air inside buildings. also not helped by ac spreading the virus widely.

        but Joshua makes a good point that other states with extensive ac do not have these spikes.

        so that is why I feel a thorough study on heat and the virus would be useful before we edge into autumn

        tonyb

      • Humidity is thought to reduce transmission of SARS-CoV-2, not increase it. So, at constant relative humidity, higher temperatures should reduce transmission.

      • nic

        thanks for this but surely we should be beyond the point of ‘thought’ and into the realm of scientific study as heat and humidity are often cited as crucial to virus spread.

        For example, as we approach autumn should we try to ensure our homes here in the UK are kept warm with a high humidity or cool and with a low humidity or any combination thereof?

        we live by the sea and generally have high humidity and down here in Devon we have had very little virus and no deaths, touch wood, for six weeks. Coincidence?

        that is until the hordes denied spain descend on us looking for a holiday. visitors here seem to have no concept whatsoever of social distancing and could create problems for us in the coming weeks. They often seem to be in large groups and presumably think that when on holiday they acquire immunity as nothing nasty can happen to them

        tonyb.

      • “Yes, it would be good to get an expert opinion on why deaths in hot states”

        It’s the time of year. Seasonal respiratory diseases follow a particular pattern. The Northern areas have a left skewed peak early in the year and a slow tail. The areas nearer the equator have a more normal curve shape over the middle of the year and Southerm Hemisphere areas get a left skewed peak and a slow tail later in the year.

        Again this is all well understood and well documented for other respiratory illnesses.

      • Joe - the non epidemiologist

        NeilW – “Yes, it would be good to get an expert opinion on why deaths in hot states”

        It’s the time of year. Seasonal respiratory diseases follow a particular pattern. The Northern areas have a left skewed peak early in the year and a slow tail. The areas nearer the equator have a more normal curve shape over the middle of the year and Southerm Hemisphere areas get a left skewed peak and a slow tail later in the year.

        Again this is all well understood and well documented for other respiratory illnesses.”

        Neil – interesting point -do you have any citation/link etc regarding the differing seasonal peaks of virus based on locations. We currently are having surges/peaks in the southern states which seem counter intuitive to me. While this may be common knowledge among infectious disease experts, it is generally unknown to the general public.

        Further insights would be helpful.

      • Joe –

        What does your level of intuition tell you about possible changes in the rate of spread when people go from less public interaction in places like bars to more public interaction in places like bars?

      • The daddy of them all is apparently

        The Transmission of Epidemic Influenza – R Edgar Hope-Simpson (Figure 8.4).

        https://link.springer.com/book/10.1007/978-1-4899-2385-1

        There’s much more recent seasonal data with greater granularity if you search for data by latitude.

        There’s lots of speculation as to reasons for this sort of pattern, but not a lot of conclusions.

        What’s increasingly clear is that Covid is likely seasonal too, and that will vary where you are on the planet. Hence why Brazil is blowing up now, but didn’t previously.

      • Neil –

        Comparing to the flu, as a respiratory disease, is of limited utility:

        For example:

        https://www.statnews.com/2020/06/26/from-nose-to-toe-covid19-virus-attacks-like-no-other-respiratory-infection/

      • Although the comparison is more apt with respect to infectiousness vs. health impact

      • Southern states also don’t have the UV variability and length of day variation.

        In AZ, it’s barely bearable to be outside a lot of the day. People are choosing to eat indoors.

      • In northern states, after being shut in, I think people tend to try to spend much more time outside.

    • Bear in mind that total cases in Florida and Texas are still vastly lower than in New York. Deaths per capita are also 5-10 times lower. But Florida did such a terrible job compared to saint Andrew according to the corrupt media. Florida dnd Texas have more uninfected people left. I have also hard the speculation about hot weather and air conditioning.

      • > Bear in mind that total cases in Florida and Texas are still vastly lower than in New York.

        LOL. Yeah. Bear that in mind: vastly lower

        Worldometers:
        New York 440,472
        Florida 432,747
        Texas 404,179

        Check back in two days for Florida, maybe two weeks for Texas.

      • Joe - the non epidemiologist

        Joshaua – Florida and Texas both have much larger populations than NY . You should use cases per million it will show
        cases per million
        Texas 14k
        NY 22K
        Fl 20k

        Deaths per million
        Texas
        NY 1681
        Fl 276
        Tx 181

        Since you are using Worldometers, you should have noticed the columns for deaths per million & Cases per million.

      • Joe –

        I responded to the aspect of David’s statement which was respect to absolute numbers, and which was ridiculously wrong.

        Florida may well catch NY even in cases per capita, and perhaps neither will be “vastly lower” in cases per capita by the time it’s all over .

        Indeed, in deaths per capita in NY are “vastly” higher.
        Lots of complicated reasons for that, including errors by politicians.

        What’s intersting to me w/r/t deaths per capita is that some people elude most of those complicated reasons, and are very selective in how they deal with that ratio so as to reinforce political ideology.

        For example, some people want to focus on the decisions and leadership of Cuomo in association with deaths per capita in NY, but rationalize away the associations between the deaths per capita in NY, and in the US overall, and the decisions and leadership of Trump.

      • Joe - the non epidemiologist

        Joshua –
        You said you were responding to david (DPY6629?) absolute numbers that were ridiculously wrong. With the exception of DPY ‘s apparent omitting of “per capita” which is mentioned through the rest of his comment, it is spot on.

        Additionally, You throw Trump into the conversation for no reason. It shows you have a strong political bias which is not healthy. There is very little that can be done at the presidential level to make things better or make things worse, It wouldnt have made any difference whether Trump or Hillary or obama been in office when this thing hit. Though the travel ban could have been imposed earlier, but the dems opposed that option.

        No question, the CDC screwed up and is part of the trump administration, But the head of CDC, Fauci, and the other experts have been in place for several adminstrations. No president can personally supervise every employee and someone making $200k shouldnt need supervision.

        Lets keep politics out of the discussion

      • Joe –

        >Additionally, You throw Trump into the conversation for no reason.

        Lol. No reason. We’re discussing the mortality rate in various regions and the relationship to political decisions is irrelevant? Fantastic.

        > It shows you have a strong political bias which is not healthy.

        I appreciate your concern for my health.

        > There is very little that can be done at the presidential level to make things better or make things worse,

        Actually, there’s a long list. He could start by not lying about our testing capacity in this country. He could continue by not downplaying the severity of the disease. He could further continue by holding members of his administration accountable and replacing them if they fail in accountability.

        It’s really fascinating how much people just can’t accept his fallibilty.
        It really is cult-like.

        > It wouldnt have made any difference whether Trump or Hillary or obama been in office when this thing hit.

        Well, that’s not what he says. He repeats over and over that his decisive actions saved millions of lives (I think how his count is up to 5 million).
        I wouldn’t have expected any administration to have been perfect, and there certainly is a wide uncertainty band for assessing the counterfactual of what the results would have been with a different executive in the Oval Office – but his administration has made mistakes. Obvious mistakes. The testing is the biggest one. Despite his lying on the topic, testing has been a fiasco in this country. Would it have been better with another president?
        I have no idea – but that doesn’t change the simple fact that it’s been a disaster under his administration.

        Again, the cult behaviors are remarkable.

        > Though the travel ban could have been imposed earlier, but the dems opposed that option.

        Most evidence on the strains indicate that despite his claims, the ” China travel ban” (which was ineffectively implemented, as was the European travel ban) had a marginal effect.

        > No question, the CDC screwed up

        Under his administration. Fascinating the people who support Mr. “I alone can fix it” give him a free pass on the functioning of his administration.

        > But the head of CDC, Fauci…

        Fauci is the head of the CDC now? I didn’t know that.

        > and the other experts…

        Interesting that Trump can get praise for not falling into the trap of the experts, and yet be excused for following the advice of experts, at that same time, form cult mebers.

        >Lets keep politics out of the discussion

        Perhaps you’re new here. First of all, politics is inextricably linked to the discussions in these pages. More to the point right here, David is constantly focused on the politics – no doubt tens of comments focusing on Cuomo and the fatality rate in New York.

      • Joe –

        > But the head of CDC, Fauci,

        Apology. I misread that to think that you were saying that Fauci is the head of the CDC….

        My bad.

      • Of course testing in Florida and Texas testing is vastly more extensive than in New York. Actual infections would track deaths meaning that by any meaningful measure New York is 5 – 10 times worse per capita. Joshua typically can’t acknowledge any truth but nitpicks with largely meaningless statistics. He never sees the point so why would anyone expect him to behave like an adult.

      • > Of course testing in Florida and Texas testing is vastly more extensive than in New York.

        LOL.

        Tests per million:

        NY: 289,000

        Florida: 162,000

        Texas: 128,000

      • Joshua is unaware that Donald Trump is the president of both Texas (181 deaths per million) and New York (1,681 deaths per million) but Andrew Cuomo is governor of only New York.
        Which means that except for a handful of densely populated cities that nobody could “lock down” – especially not for a highly contagious virus that has been active in the US since January, 2.5 months before the first lockdown – the US managed the virus better than most of the western world.

      • Joe –

        As you defend David’s grasp of and approach to the numbers, keep in mind that about a week ago he was posting in this thread that the epidemic is over. Let’s hope that the 1400 deaths in this country are the peak, but even if they aren’t or even if they are, keep in mind you’re defending someone who takes that approach to looking at the numbers.

      • The flattening out of the increase in daily cases is hopefully a good sign. Presumably will find out in 2 or 3 weeks (since we’re already well into the rise in deaths that parallel the beginning of the rise in cases we might expect the flattening in deaths in less than 3 to 4 weeks from today), and hopefully something else will come through and we won’t have any continued rise in delay deaths from yesterday forward. Seems like the fed gov has been banking on magic all along. Maybe it will come through.

  4. Andrew Carey

    This all sounds very intellectual but it’s rather distant from the outcomes we want. Sure, we want this virus to go away. But viruses have always been with us. What we want is this virus, and the next one, and the next novel coronavirus one after, to do less harm, to move through slowly, and to not overwhelm health care capacity. Making hand-washing compulsory at airports seems like a good idea to me, and the correlation between the death rate and housing overcrowding rates ( not density, important distinction ) but overcrowded living conditions is appallingly close to 1.

    • joe the non epidemiologist

      There is some speculation that the reason the virus has spread much more slowly in the various asian countries, Japan, S Korea, formosa, etc is that they developed cross immunity from previous variations of corona viruses. As opposed to the widely attributed virtues of mask wearing and cultural differences.

      • Joe –

        > As opposed to the widely attributed virtues of mask wearing and cultural differences.

        Why the either/or framing?

        Additionally, perhaps there might be a few other influential factors as well? As an official non-epidemiologist, what do you think about the possibility that having a competent federal government may have played a role in those countries? For example, conducting rigorous testing and creating a robust infrastructure for contact tracing and isolating?

        Just thinking aloud, but maybe their experience with previous epidemics may have taught the a thing or two.

      • Roger Knights

        Here’s another speculation:

        “MUTATED COVID-19 VIRAL STRAIN IN U.S. AND EUROPE 10 TIMES MORE CONTAGIOUS THAN ORIGINAL STRAIN”

        Published: Jun 30, 2020 By Mark Terry in Biospace at https://www.biospace.com/article/mutated-covid-19-viral-strain-in-us-and-europe-much-more-contagious/

        “Researchers have been analyzing and tracking the novel coronavirus, SARS-CoV-2, since it first appeared in China in January. Researchers at The Scripps Research Institute have found that the strains spreading so quickly in Europe and the U.S. have a mutated S “spike” protein that makes it about 10 times more infectious than the strain that originally was identified in Asia. The research was published online on bioRxiv at https://www.biorxiv.org/content/10.1101/2020.06.12.148726v1.full.pdf and has yet to be peer-reviewed.”

        The National Review comments, “If it seems like the United States is having a tougher time controlling the spread of the coronavirus than Asian countries did in winter and early spring, that’s partially because this version of the virus is tougher to stop from spreading.” https://www.nationalreview.com/2020/07/four-assumptions-about-the-coronavirus/

        This explains to me why the lockdowns and contact tracing that worked in East Asia and Australasia will not work in America or Europe, or will not work as well. Nevertheless, Tedros, head of WHO, is still saying he is certain they will work. (They did work, apparently, in Germany.)

        NR continues: “The country enacted unprecedented, sweeping lockdowns that kept most Americans at home, at great cost to the economy. These lockdowns slowed the spread of the virus, but did not stop it. … [I]t’s important to recognize that no one is ignoring any simple or easy solutions, because such solutions don’t exist.”

        However, in a subsequent article, at https://www.nationalreview.com/corner/coronavirus-update-a-closer-look-at-the-recent-surge/:, NR concedes: “The promotion of mask-wearing and social distancing, and the increased focus on nursing homes, all could make a difference for the better.”

      • Roger Knights: The Zhang paper you cited says:

        “The G614 genotype was not detected in February (among 33 sequences) and observed at low frequency in March (26%), but increased rapidly by April (65%) and May (70%) (Fig. 1b), indicating a transmission advantage over viruses with D614.”

        The average period between infection and transmission is about 1 week. Let’s consider an environment where the pandemic with the original strain has stabilized and each infected person on the average infects one new person. Now we introduce the G614 strain which supposedly will be passed on by each infected person to 10 new people. Every week the relative fraction infected with the G614 strain would increase by a factor of 10. In the 10 weeks between March and May, there would be 10^8 more people infected with the G614 than the original D614. However that is not what the data shows. If G614 were 10% more infectious, then the ratio of G614 to D614 would double (1.1^8 = 2.1) after eight cycles of infection followed by transmission. By today, the ratio would increase by a factor of 6.7 (1.1^20). So the advantage is probably closer to 10% than 1000%.

        In their experiments with a safe MODEL virus modified to express the SARS-CoV-2 spike protein (a pseudovirus), the G614 mutant did grow 9 fold faster. However, the real SARS-CoV-2 obvious behaves differently.

        (Don’t trust liberal or conservative media to accurately convey the results in research papers. Read for yourself.)

  5. David L. Hagen

    Thanks Nic. Encouraging to see such rapid progression to herd immunity.
    Any thoughts on how effective treatment impact the results? Might prophylactic use of hydroxychloroquine delay achieving herd immunity?
    Or does heterogeneity dominate?
    To treat those who do catch Covid19, the Zelenko Protocol achieved 84% lower hospitalizations & 80% lower fatalities (0.79%) by rapid early use of Hydroxychloroquine, Azithromycin & Zinc within 4 days. ~75% of 62 papers on the effectiveness of hydroxychloroquine affirm the effectiveness of rapid early use preferably within 2 days. Conversely, late use in ICU is marginal / inconclusive.
    Switzerland was treating with hydroxychloroquine, stopped for 2 weeks, and then resumed. Switzerland’s Covid19 rate correspondingly jumped from 2.4% to 11.5% and back down to 3.0%. There was a similar jump in France. Sources: TheZelenkoProtocol.com, c19study.com and http://www.francesoir.fr/societe-sante/covid-19-hydroxychloroquine-works-irrefutable-proof

    • David
      If prophylactic use of hydroxychloroquine reduces transmission (by reducing infections, not just disease severity once infected) then it would reduce the herd immunity threshold (so long as it continued in widespread use), by reducing the reproduction number. It would also slow progress towards the HIT, so that despite being lower it would be reached later.

      If the reduced HIT were overshot (which it is bound to be, to an extent), so that cumulative infections also exceeded the HIT in the absence of prophylactic use of hydroxychloroquine, then the epidemic would not rebound when people ceased such use.

  6. For me, the issue of air conditioning is misapplied; the focus namely at temperature. In a closed environment that happens to be air condition to provide cooling, the airborne organism, ie, the novel coronavirus is recirculated and, when inhaled or impacts the eyes or nose, become infectious. Unless the air filtration system scrubs the air of micro organisms, even a “HEPA” system, then the indoor environment along with air conditioning is a mass contamination system. We can go back to “Typhoid Mary” and her contaminating the water supply until the pump handle was removed. For indoor air decontamination of this airborne virus, most indoor environments will have to install air handling equipment capable of reducing substantially the airborne virus load. The systems exist, the costs are high, the efficacy variable if other pollutants like cigarettes smoke clogs the system. Ban smoking. Have high flow air handling systems being filtered by constantly cleansed systems, and voila, you can return to indoor dining sans face masks.

  7. Reblogged this on Climate Collections.

  8. If mere exposure to colds in general provided resistance to get covid-19 infection, I would think infection rates in an urban metropolis like NYC would be less for covid-19 than it has been in as much as they probably have been exposed to cold viruses in general to a greater extent than less crowded areas over the years…

  9. “A key reason for variability in susceptibility to COVID-19 given exposure to the SARS-CoV-2 virus causing is that the immune systems of a substantial proportion (35% to 80%) of unexposed individuals have T-cells, circulating antibodies or other components that are cross-reactive to SARS-CoV-2 and can be expected to provide substantial resistance to it.[6] [7] [8] [9] Such components likely arise from past exposure to common cold or other coronaviruses, or to influenza.[10] Not being specific to SARS-CoV-2, and typically not being antibodies, such immune system components are not normally detected in seroprevalence or other tests for immunity to SARS-CoV-2.”

    Much and all as I like the gist of this article I feel the above statement does not gel.
    Medically speaking you either have antibodies to the disease or you do not.
    The reasons why a virus does not affect everyone in its outbreak or spread is complex. A bad flu season might only affect 5% of the population in any one year. Why so low?
    There are a lot of factors you allude to, basically a group of people who are more social or more vulnerable, there is the time of year of the outbreak as seasonal factors affect viral viability. These are the dynamics in play. Exposure and viral load are critical

    Some cases in point.
    Heavy exposure to the virus, as seen in Italy and Wuhan in doctors and nurses resulted virtually 100% infection as expected. These are people whose workloads dictate exposure to more colds, flus etc and higher T-cell stimulation and development and yet they all still caught it. According to that part of the theory put forward there would be a large cohort of people who should be “naturally” immune.
    Sorry, it is just not so.
    -35-80% sounds like an estimate of ECS, so broad it is meaningless.
    Multiple different unprovable contributing factors puts the fudge on top.

    HIT is not a fixed number, the threshold varies seasonally and with the specifics of the infecting agent. The troubling fact that young children find it hard to catch shows that for this virus the other factor is the presence of ACE 2 receptors ? meaning that the load of virus needed to infect could vary with how many receptors you have ( more as you get older).
    This may be much more important than speculation about T cells which does not transfer from the Petrie Dish to real life

    • angtech
      May I suggest that you read the papers that I cited, and others concerning T-cells and COVID-19.
      I didn’t say that cross-reactive T-cells etc. provided immunity, just “substantial resistance”. T-cell defences may not technically prevent infection, but they disrupt virus replication and so prevent disease or reduce its severity. Very high viral doses may well overcome T-cell defences, which could explain why infection rates in doctors and nurses, working in enclosed spaces and at close quarters to infected people, can be very high.

      COVID-19 infections in healthcare workers are not uniformly high. for instance, in a large referral hospital in Barcelona, Spain the prevalence in April of SARS-CoV-2 infection was 11.2% (https://doi.org/10.1101/2020.04.27.20082289). You provide no source for your “virtually 100% infection” assertion.

      • niclewis
        Thank you for your courtesy in addressing my comments.
        I should have added that I enjoy your writing and research.
        “May I suggest that you read the papers that I cited, and others concerning T-cells and COVID-19.”
        I do have some knowledge of the subject. One of my close acquaintances worked in the early T cell research in the 1974-76 era at Monash University in Victoria, Alfred Hospital.

        “I didn’t say that cross-reactive T-cells etc. provided immunity, just “substantial resistance”.

        True, the implication is that a substantial number of people can be immune to the virus without going down the traditional route of developing antibodies [exposure].

        “A key reason for variability in susceptibility to COVID-19 given exposure to the SARS-CoV-2 virus causing is that the immune systems of a substantial proportion (35% to 80%) of unexposed individuals have T-cells, circulating antibodies or other components that are cross-reactive to SARS-CoV-2 and can be expected to provide substantial resistance to it.[6] [7] [8] [9] Such components likely arise from past exposure to common cold or other coronaviruses, or to influenza.[10] Not being specific to SARS-CoV-2, and typically not being antibodies, such immune system components are not normally detected in seroprevalence or other tests for immunity to SARS-CoV-2.”

        Medically some people have resistance to infections even without prior exposure to any of the causes mentioned. Some people never catch the Flu, for instance. Nonetheless these are not key reasons for the variability in susceptibility.

        “You provide no source for your “virtually 100% infection” assertion.”

        True. My comment was ‘ Heavy exposure to the virus, as seen in Italy and Wuhan in doctors and nurses “. Do you dispute heavy exposure causing virtually 100% infection unlikely?
        “The minimal infective dose is defined as the lowest number of viral particles that cause an infection in 50% of individuals”. It can only logically go up from there

      • Steven Mosher

        “Comment
        Published: 07 July 2020
        Pre-existing immunity to SARS-CoV-2: the knowns and unknowns
        Alessandro Sette & Shane Crotty
        Nature Reviews Immunology volume 20, pages457–458(2020)Cite this article

        113k Accesses

        2527 Altmetric

        Metricsdetails

        T cell reactivity against SARS-CoV-2 was observed in unexposed people; however, the source and clinical relevance of the reactivity remains unknown. It is speculated that this reflects T cell memory to circulating ‘common cold’ coronaviruses. It will be important to define specificities of these T cells and assess their association with COVID-19 disease severity and vaccine responses.

        As data start to accumulate on the detection and characterization of SARS-CoV-2 T cell responses in humans, a surprising finding has been reported: lymphocytes from 20–50% of unexposed donors display significant reactivity to SARS-CoV-2 antigen peptide pools1,2,3,4.

        In a study by Grifoni et al.1, reactivity was detected in 50% of donor blood samples obtained in the USA between 2015 and 2018, before SARS-CoV-2 appeared in the human population. T cell reactivity was highest against proteins other than the coronavirus spike protein, but T cell reactivity was also detected against spike. The SARS-CoV-2 T cell reactivity was mostly associated with CD4+ T cells, with a smaller contribution by CD8+ T cells1. Similarly, in a study of blood donors in the Netherlands, Weiskopf et al.2 detected CD4+ T cell reactivity against SARS-CoV-2 spike peptides in 1 of 10 unexposed subjects and against SARS-CoV-2 non-spike peptides in 2 of 10 unexposed subjects. CD8+ T cell reactivity was observed in 1 of 10 unexposed donors. In a third study, from Germany, Braun et al.3 reported positive T cell responses against spike peptides in 34% of SARS-CoV-2 seronegative healthy donors (CD4+ and CD8+ T cells were not distinguished). Finally, a study of individuals in Singapore, by Le Bert et al.4, reported T cell responses to nucleocapsid protein nsp7 or nsp13 in 50% of subjects with no history of SARS, COVID-19, or contact with patients with SARS or COVID-19. A study by Meckiff using samples from the UK also detected reactivity in unexposed subjects5. Taken together, five studies report evidence of pre-existing T cells that recognize SARS-CoV-2 in a significant fraction of people from diverse geographical locations.

        These early reports demonstrate that substantial T cell reactivity exists in many unexposed people; nevertheless, data have not yet demonstrated the source of the T cells or whether they are memory T cells. It has been speculated that the SARS-CoV-2-specific T cells in unexposed individuals might originate from memory T cells derived from exposure to ‘common cold’ coronaviruses (CCCs), such as HCoV-OC43, HCoV-HKU1, HCoV-NL63 and HCoV-229E, which widely circulate in the human population and are responsible for mild self-limiting respiratory symptoms. More than 90% of the human population is seropositive for at least three of the CCCs6. Thiel and colleagues3 reported that the T cell reactivity was highest against a pool of SARS-CoV-2 spike peptides that had higher homology to CCCs, but the difference was not significant.

        What are the implications of these observations? The potential for pre-existing crossreactivity against COVID-19 in a fraction of the human population has led to extensive speculation. Pre-existing T cell immunity to SARS-CoV-2 could be relevant because it could influence COVID-19 disease severity. It is plausible that people with a high level of pre-existing memory CD4+ T cells that recognize SARS-CoV-2 could mount a faster and stronger immune response upon exposure to SARS-CoV-2 and thereby limit disease severity. Memory T follicular helper (TFH) CD4+ T cells could potentially facilitate an increased and more rapid neutralizing antibody response against SARS-CoV-2. Memory CD4+ and CD8+ T cells might also facilitate direct antiviral immunity in the lungs and nasopharynx early after exposure, in keeping with our understanding of antiviral CD4+ T cells in lungs against the related SARS-CoV7 and our general understanding of the value of memory CD8+ T cells in protection from viral infections. Large studies in which pre-existing immunity is measured and correlated with prospective infection and disease severity could address the possible role of pre-existing T cell memory against SARS-CoV-2.

        If the pre-existing T cell immunity is related to CCC exposure, it will become important to better understand the patterns of CCC exposure in space and time. It is well established that the four main CCCs are cyclical in their prevalence, following multiyear cycles, which can differ across geographical locations8. This leads to the speculative hypothesis that differences in CCC geo-distribution might correlate with burden of COVID-19 disease severity. Furthermore, highly speculative hypotheses related to pre-existing memory T cells can be proposed regarding COVID-19 and age. Children are less susceptible to COVID-19 clinical symptoms. Older people are much more susceptible to fatal COVID-19. The reasons for both are unclear. The age distribution of CCC infections is not well established and CCC immunity should be examined in greater detail. These considerations underline how multiple variables may be involved in potential pre-existing partial immunity to COVID-19 and multiple hypotheses are worthy of further exploration, but caution should be exercised to avoid overgeneralizations or conclusions in the absence of data.

        Pre-existing CD4+ T cell memory could also influence vaccination outcomes, leading to a faster or better immune response, particularly the development of neutralizing antibodies, which generally depend on T cell help. At the same time, pre-existing T cell memory could also act as a confounding factor, especially in relatively small phase I vaccine trials. For example, if subjects with pre-existing reactivity were assorted unevenly in different vaccine dose groups, this might lead to erroneous conclusions. Obviously, this could be avoided by considering pre-existing immunity as a variable to be considered in trial design. Thus, we recommend measuring pre-existing immunity in all COVID-19 vaccine phase I clinical trials. Of note, such experiments would also offer an exciting opportunity to ascertain the potential biological significance of pre-existing SARS-CoV-2-reactive T cells.

        It is frequently assumed that pre-existing T cell memory against SARS-CoV-2 might be either beneficial or irrelevant. However, there is also the possibility that pre-existing immunity might actually be detrimental, through mechanisms such as ‘original antigenic sin’ (the propensity to elicit potentially inferior immune responses owing to pre-existing immune memory to a related pathogen), or through antibody-mediated disease enhancement. While there is no direct evidence to support these outcomes, they must be considered. A detrimental effect linked to pre-existing immunity is eminently testable and would be revealed by the same COVID-19 cohort and vaccine studies proposed above.

        There is substantial data from the influenza literature indicating that pre-existing cross-reactive T cell immunity can be beneficial. In the case of the H1N1 influenza pandemic of 2009, it was noted that an unusual ‘V’-shaped age distribution curve existed for disease severity, with older people faring better than younger adults. This correlated with the circulation of a different H1N1 strain in the human population decades earlier, which presumably generated pre-existing immunity in people old enough to have been exposed to it. This was verified by showing that pre-existing immunity against H1N1 existed in the general human population9,10. It should be noted that if some degree of pre-existing immunity against SARS-CoV-2 exists in the general population, this could also influence epidemiological modelling, and suggests that a sliding scale model of COVID-19 susceptibility may be considered.

        In conclusion, it is now established that SARS-CoV-2 pre-existing immune reactivity exists to some degree in the general population. It is hypothesized, but not yet proven, that this might be due to immunity to CCCs. This might have implications for COVID-19 disease severity, herd immunity and vaccine development, which still await to be addressed with actual data.”

        Actual data, go figure

        with regard to CD4+ function. In deep profiling of patients with Covid,
        https://science.sciencemag.org/content/sci/early/2020/07/15/science.abc8511.full.pdf
        Three different classes of immunology types were identified.
        eye opening

      • Re: “May I suggest that you read the papers that I cited, and others concerning T-cells and COVID-19.
        I didn’t say that cross-reactive T-cells etc. provided immunity, just “substantial resistance”. T-cell defences may not technically prevent infection, but they disrupt virus replication and so prevent disease or reduce its severity”

        As I, other immunologists, vaccine scientists, epidemiologists, etc. pointed out for months, cross-reactivity (including cross-reactive T cells) does not necessarily entail a benefit, let alone does it entail cross-reactive T cells limiting SARS-CoV-2 infection rates. Studies on TCR binding to viral peptides on MHC molecules, BCR binding to viral epitopes, B cells making antibodies that bind to both SARS-CoV-2 and other coronaviruses, etc., tells you that an immune response occurs. They don’t tell you whether that response is beneficial, especially for a virus like SARS-CoV-2 that causes immune dysregulation with cytokine storm in COVID-19, engages in immunoevasion, is much more virulent than numerous other coronaviruses (such as those that cause colds), is more contagious with a larger R0 than a number of other viruses such as seasonal influenza viruses, etc.

        Moreover, it’s not even clear that the cross-reactive immune response from prior exposure to other coronaviruses would be as good as, or better than, the initial phase of the adaptive antigen-specific (B and T cell) response that’s already present even in the absence of prior coronavirus infection. Same for being as good as, or better than, the innate immune response (ex: macrophages, dendritic cells, NK cells, etc.) that’s already present without need for prior infection. Even now, the published evidence has not shown a benefit from cross-reactivity in the adaptive immune response to SARS-CoV-2:

        http://archive.is/ISw5W#selection-20053.0-20330.0

        https://twitter.com/profshanecrotty/status/1293346418158051330

        co-author of:
        “Pre-existing immunity to SARS-CoV-2: the knowns and unknowns
        […]
        It is frequently assumed that pre-existing T cell memory against SARS-CoV-2 might be either beneficial or irrelevant. However, there is also the possibility that pre-existing immunity might actually be detrimental, through mechanisms such as ‘original antigenic sin’ (the propensity to elicit potentially inferior immune responses owing to pre-existing immune memory to a related pathogen), or through antibody-mediated disease enhancement. While there is no direct evidence to support these outcomes, they must be considered. A detrimental effect linked to pre-existing immunity is eminently testable and would be revealed by the same COVID-19 cohort and vaccine studies proposed above.”

        https://www.nature.com/articles/s41577-020-0389-z

        and of:
        “Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals
        […]
        There is also great uncertainty about whether adaptive immune responses to SARS-CoV-2 are protective or pathogenic, or whether both scenarios can occur depending on timing, composition, or magnitude of the adaptive immune response.”

        https://www.sciencedirect.com/science/article/pii/S0092867420306103

        Pathogenic T-cells and inflammatory monocytes incite inflammatory storms in severe COVID-19 patients”
        “The potential danger of suboptimal antibody responses in COVID-19”
        “A plea for the pathogenic role of immune complexes in severe COVID-19”

        “Antibody dependent enhancement due to original antigenic sin and the development of SARS”
        Working paper: “Paradoxical dynamics of SARS-CoV-2 by herd immunity and antibody-dependent enhancement”
        “Dengue fever, COVID‐19 (SARS‐CoV‐2), and antibody‐dependent enhancement (ADE): A perspective”

        Detrimental cross-reactivity in the context of other viral conditions:
        “Immunity to dengue virus: a tale of original antigenic sin and tropical cytokine storms
        Original antigenic sin impairs cytotoxic T lymphocyte responses to viruses bearing variant epitopes”
        “The role of T cell antagonism and original antigenic sin in genetic immunization”

        So once again: Nic Lewis has no expertise in immunology, epidemiology, or any biology topic pertinent to COVID-19. And Judith Curry largely protects him from criticism by often blocking comments that shows he’s wrong. This website has become another haven for right-wing, politically-motivated COVID-19 disinformation (as it previously was on climate science), whether it’s:

        1) peddling the conspiracy theory that SARS-CoV-2 originally came from a lab in Wuhan
        2) repeatedly under-estimating SARS-CoV-2’s infection fatality rate
        3) taking advantage of right-censoring to under-estimate COVID-19 deaths on the Diamond Princess
        4) under-estimating the proportion of people SARS-CoV-2 can infect [ex: by distorting cross-reactivity to under-estimate the herd immunity threshold]
        5) concealing how much larger Sweden’s COVID-19’s deaths per capita are than nearby countries that locked down
        6) acting as if hydroxychloroquine works for COVID-19 / SARS-Cov-2 infection, long after it was shown not to

        And so on, dating back to at least late April.

        There’s a reason why (with the exception of Joshua, mosher, verytallguy, and maybe a couple of others) virtually no one with any substantial understanding of COVID-19 comes here or comments here. There’s a reason why Lewis or Curry aren’t publicly running their COVID-19 claims by domain experts. So I’ll leave folks to this right-wing echo chamber they’ve chosen, away from informed experts who easily debunk the non-expert distortions Lewis peddles.

        https://twitter.com/AtomsksSanakan/status/891040491214688257

        https://medium.com/@silentn2040/the-dangerous-myth-that-sweden-achieved-herd-immunity-fd2579526b8b

      • For the record, the comment by Atomsk’s Sanakan contain multiple false, baseless and/or misleading claims. Examples (text from the comment is in quotes) are:

        “Nic Lewis has no expertise in immunology, epidemiology, or any biology topic pertinent to COVID-19. And Judith Curry largely protects him from criticism by often blocking comments that shows he’s wrong.”
        – I’ll leave other, less partisan, individuals to judge whther I have sufficient expertise in epidemiological modeling relating to COVID-19 to write about this subject.
        – the claim about Judith Curry is false. She appears to have blocked hardly any comments.

        “1) peddling the conspiracy theory that SARS-CoV-2 originally came from a lab in Wuhan”
        – this theory is not something I’ve posted on, but it’s not correct to describe it as a ‘conspiracy theory’. Some experts consider the theory to be plausible, given the available evidence. It seems unlikely that the theory will be either proved or disproved.

        “2) repeatedly under-estimating SARS-CoV-2’s infection fatality rate”
        – this is an unspecific and unsubstantiated claim. I am unaware of any evidence supporting it.

        “3) taking advantage of right-censoring to under-estimate COVID-19 deaths on the Diamond Princess”
        – that is an outright falsehood. In my article that used deaths data from the Diamond Princess, I allowed for right-censoring, using the original authors’ death rate model. I wrote ‘As at 21 March the Verity et al. model estimates that 96% of the eventual deaths should have occurred, so we can scale up to 100%’. As it subsequently turned out, the Verity et al. death model underestimated the final number of deaths, but I wasn’t to know that would be the case.

        “4) under-estimating the proportion of people SARS-CoV-2 can infect [ex: by distorting cross-reactivity to under-estimate the herd immunity threshold]”
        – my estimates of the HIT have generally been in the same ballpark as those in the published Gomes et al, Aguas et al. and Tkachenko et al. studies.
        – my original article didn’t even mention cross-reactivity.
        – heterogeneity in biological susceptibility is in any event not the most important cause of the HIT being lower in my and the aforementioned other published analyses than it would be for a homogeneous population.

        “5) concealing how much larger Sweden’s COVID-19’s deaths per capita are than nearby countries that locked down”
        – how can I have ‘concealed’ information when it is readily accessible, and frequently publicised by proponents of lockdowns?

        “As an immunologist, I can say what you just wrote makes no sense and has been repeatedly debunked in the scientific literature.”

        The link given for this statement is from a twitter thread in which Atomsk’s Sanakan said this in response to a tweet from ‘Christina’ which read
        ‘The Aluminum,Thiomersal, Poly-sorbet 80 & whatever garbage kills our gut bacteria-This causes a cytokine storm=/causes brain damage/swelling’
        This has nothing whatsoever to do with any post at Climate Etc.

        I note that Atomsk’s Sanakan claims to be an immunologist. While I have no reason to doubt this assertion, as he hides his identity it is not possible to verify it.

      • Atomsk’s Sanakan, quoting Shane Crotty: but fewer would become severely ill and die from COVID-19.

        That seems to be worth more emphasis than you have given it.

      • Atomsk’s Sanakan: 6) acting as if hydroxychloroquine works for COVID-19 / SARS-Cov-2 infection, long after it was shown not to

        This topic has been much disputed, not promoted by everyone here. Dr Didier Raoult’s latest detailed report is mildly supportive.

        I’ll repost here:
        More details on clinical practice in Didier Raoult practice in Marseille:
        https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7315163/

        matthewrmarler | August 10, 2020 at 11:50 am | Reply
        a snippet: Considering that death was a main outcome and that only 35 patients died in our cohort (0.9%), the number of covariates to be included in multivariate analyses was a priori limited to three variables: previous health status (modified Charlson combined comorbidity index) [22], severity of the disease (NEWS-2 score) and treatment (HCQ-AZ for at least 3 days).Association between treatment (HCQ + AZ≥3days) and death was estimated by Cox regression models using three different methods. In the primary analysis, a multivariable Cox regression adjusted on the combined comorbidity index and the NEWS score was performed. We conducted a secondary analysis that used propensity-score matching. The propensity score was calculated using multivariable logistic regression on the combined comorbidity index and the NEWS score. Each patient of the “other treatment” group was matched to a patient selected of the “HCQ-AZ ≥ 3 days” group using the 1:1 nearest-neighbour propensity score matching method to create a matched sample. The third analysis used inverse probability weighting

        matthewrmarler | August 10, 2020 at 2:47 pm |
        to me, this is the strongest evidence yet published in support of early use of HCQ. Table two shows clearly that the “best treatment” group was not exactly matched by the other treatment groups on comorbidities or age; the authors attempted to address that with a propensity score analysis. Granted that such things can’t be done perfectly, it looks to be like they did it well (also, I well remember being totally fooled by the Lancet study that was bogus.)

        selected results: The mean duration of hospitalization was significantly shorter in the HCQ-AZ group (7.3 days (sd 7) vs 9.2 (sd 8.1) than in the other treatment groups. The proportion of patients hospitalized �10 days was 3.5% in the HCQ-AZ group and 14.2% in the other treatment groups (Table 4). We observed that 9 of the 35 patients who died (25.7%) developed a concurrent bacterial infection, including community-acquired Streptococcus pneumoniae in 2 patients, ventilation-acquired pneumonia in 4 patients, catheter-associated septicaemia in 2 patients and cholecystitisrelated septicaemia in 1 patient (Table S5).

        As the youngest patient who died was 60 , …

        Reducing hospital stay by 1.9 days on average, on a large number of patients, is a good result, to my mind.

        I think that this paper deserves a wide readership.

        Very few if any claims are posted at Climate Etc without being disputed.

        .

      • Re: “Atomsk’s Sanakan, quoting Shane Crotty: but fewer would become severely ill and die from COVID-19.
        That seems to be worth more emphasis than you have given it.”

        You misleadingly left out the rest of the quote, despite it being clearly shown to you. There’s a term for mining quotes in that way:

        “Additionally, even if our most optimistic speculations about crossreactive T cell memory were found to be correct, it would mean that just as many people would get infected with SARS-CoV-2, but fewer would become severely ill and die from COVID-19.”

        You left out the rest of the quote to make it look like Crotty was saying that fewer would become severely ill and die. Instead he’s saying that would be the case under the most optimistic speculations. But they have not shown yet that those optimistic speculations are true, as per the published work I quoted from him. In that work Crotty explicitly notes that the response could instead be useless or harmless, instead of causing fewer to become severely ill and die. You willfully ignored that, as expected:

        “It is frequently assumed that pre-existing T cell memory against SARS-CoV-2 might be either beneficial or irrelevant. However, there is also the possibility that pre-existing immunity might actually be detrimental […].”
        https://www.nature.com/articles/s41577-020-0389-z

        “There is also great uncertainty about whether adaptive immune responses to SARS-CoV-2 are protective or pathogenic, or whether both scenarios can occur depending on timing, composition, or magnitude of the adaptive immune response.”
        https://www.sciencedirect.com/science/article/pii/S0092867420306103

        And again, for the same thread in which that quote comes from:

        https://twitter.com/profshanecrotty/status/1293346134505660416

        I also went over other research on cross-reactivity being detrimental in the immune response to other pathogens, along with T cells often being detrimental to the immune response to SARS-CoV-2. You conveniently ignored those as well, again as expected.

        Seriously, Matthew, enough already. It’s this type of thing that made me usually disregard your comments. I’ll now go back to doing so, and Curry can feel free to return to blocking comments to shield you from rebuttals.

    • Steven Mosher
      Yes, I read the Sette et al. paper a few weeks ago. it’s a useful study. As they say, there are many unanswered questions.

      Thanks for the link to the Matthew et al Science study, which I had missed.

      Given the huge complexity of the human immune system and inter-person differences in genotype and in past environmental exposure to different disease causing agents and other factors, it seems unsurprising that people’s resistance to infection by SARS-CoV-2 will vary widely given the same exposire to it.

      Nonetheless, differing social connectivity appears to be the more important factor in lowering the HIT from that applicable in a homogeneous population or for random vaccination.

      • Steven
        Thanks for that extensive research.
        N.B.
        “ Furthermore, highly speculative hypotheses related to pre-existing memory T cells can be proposed regarding COVID-19 and age. Children are less susceptible to COVID-19 clinical symptoms. Older people are much more susceptible to fatal COVID-19.“

        The T cells might have some primitive memory, but seem to develop more in response to infections that our bodies process.
        The take away idea is that children’s T cells have not developed their responses fully and get more as they grow older.
        Therefore children should get COVID 19 more often and more severely than adults, having less innate resources.
        This is obviously not true and shows, as I have stated that T cells are not an important active force in a new viral infection such as COVID 19 despite its genetic links to other corona viruses.
        The most likely explanation at the moment for children not catching it readily and not getting as ill with it is that the viral attachment or the viral reproduction is stopped or slowed down by lack of a receptor site. ( ? Ace 2 related.

        A lot of speculative stuff sometimes translates to belief that things must and do happen because of a vague possibility.
        Like tipping points.
        T cells seem to be more involved in ways like early destruction and mopping up of already infected cells which may result in less virus being produced. This may help develop a quicker antibody production.
        Destruction of cells triggers a quicker recognition of and adaption to a viral infection. It might mean the difference between a severe cold and death but is not the way in which the body prevents infection.

      • angtech
        You say “The T cells might have some primitive memory, but seem to develop more in response to infections that our bodies process.
        The take away idea is that children’s T cells have not developed their responses fully and get more as they grow older.
        Therefore children should get COVID 19 more often and more severely than adults, having less innate resources.
        This is obviously not true and shows, as I have stated that T cells are not an important active force in a new viral infection such as COVID 19 despite its genetic links to other corona viruses.”

        I’m afraid this is all wrong.
        It is hypothetised that children have more cross-reactive T-cells due to their (paricularly young children’s) higher frequency of infection by common-cold coronavirsues, and hence are more resistant to COVID-19 than adults.
        But there may well be other reasons why children are both less likely to be infected by SARS-CoV-2 and to develop much less severe disease if infected, than adults.

      • Nic
        “I’m afraid this is all wrong.
        It is hypothetised that children have more cross-reactive T-cells due to their (paricularly young children’s) higher frequency of infection by common-cold coronavirsues, and hence are more resistant to COVID-19 than adults.”

        You cannot get cross reactive T cells until you have been exposed to infections to get the cross reactivity.
        Very young children have some immunity to cold viruses from maternal antibodies and the from milk antibodies so they cannot develop cross reactivity.
        After 12 months their immune system is robust enough to react efficiently to what comes their way.
        All teenagers and older people have gone through this rite of passage and have developed both their antibodies and T cell functions.
        Older people should have the most cross reactivity possible, not the least.
        The hypothesis that young children can resist covid better is an attempt to make a miracle out of a molehill.
        The best way to illustrate the flaw in the logic is simple. Children catch a lot of colds when they go to pre school (4-5years old) or day care (younger). They catch a lot of colds. Covid is a cold virus. How can they be prone to catching all the other cold viruses but mysteriously have a high resistance to just one cold virus, covid. Answer, they don’t.
        As they get older their immunity to cold viruses is because of the antibodies they develop, not the T cells per se.

        As said this is a minor side issue to the much more important facts you are presenting. Herd immunity is determined by who is infected eg social types etc and how often they are able to pass the infection on.

      • angtech
        As I’ve pointed out before, old people suffer from a less efficient T-cell response – “T-cell exhaustion”.

        Most common cold viruses infections have an estimated R_0 value of about 6, considerably higher than for SARS-CoV-2. Moreover they have a much shorter incubation period. Therefore they will spread much more readily than COVID-19 in children (and other parts of the population) for any given average level of resistance.

        The level of T-cells resulting from common cold coronaviruses declines with time since infection. As pre-school and younger school children get colds more often, they can be expected to have a higher level of cross-reactive T-cells than teenagers and adults – who as you say will have more developed antibody armouries against common cold coronaviruses.

      • Beginning of first quarter (very small sample size):

        –snip–
        The greatest risk of transmission to contacts was found for the 14 cases <15 years of age (22.4%); 8 of the 14, who ranged in age from <1 to 11 years) infected 11 of 49 contacts. Overall, 606 outbreaks were identified, 74% of which consisted of only two cases. Discussion The open-source software program permitted the centralized tracking of contacts and rapid identification of links between cases. Workplace contacts were at higher risk of developing symptoms. Although childhood contacts were less likely to become cases, children were more likely to infect household members, perhaps because of the difficulty of successfully isolating children in household settings.
        –snip–

        https://www.medrxiv.org/content/10.1101/2020.07.16.20127357v1

        Shows why it's just insane that we've failed so badly at contact tracing.

      • Steven Mosher

        Nic

        76 %

        https://www.thedailybeast.com/a-summer-camp-took-almost-every-precaution-the-majority-of-kids-still-got-covid-19

        there are many examples of congregate settings where attack rates
        are above 50%

        I’ve see, 76%, 50%, 80%, and 100%

      • Steven Mosher

        angech

        what Nic ignores is that “reactivity” does not entail Immunity.

        1. yes it could provide protection. this is an unknown
        2. It could provide NO ADDITIONAL benefit, this is an unknown
        3. it could cause HARM ( via over reaction) this is an unknown.

        nic doesnt model this separate unknown

        further he is wrong about children. 76% attack rate in the most recent
        study of campers.

        Nic will use NONE of this data to constrain his modelling estimates
        so you can basically throw his work out the window.

        he will make arguments as to why this data should not inform our understanding rather than using it to constrain or inform our understanding

      • Steven Mosher

        “The most likely explanation at the moment for children not catching it readily and not getting as ill with it is that the viral attachment or the viral reproduction is stopped or slowed down by lack of a receptor site. ( ? Ace 2 related.”

        mere speculation. and wrong

        https://www.cdc.gov/mmwr/volumes/69/wr/mm6931e1.htm

      • Steven Mosher

        “Nonetheless, differing social connectivity appears to be the more important factor in lowering the HIT from that applicable in a homogeneous population or for random vaccination.”

        there is no doubt that differing social connectivity plays a role.
        but “connectivity” is ambiguous.
        Take a church of people who regularly meet and are highly connected
        A) make them wear masks
        B) allow them to go mask free.
        Both groups will have the same “connectivity” but one will exhibit a higher
        R[t] because of the differing NPI practice

        basically all the data you work from is hopelessly confounded by
        A) differing PHYSICAL connectivity ( how many people I mix with)
        B) differing practices in regard to NPI

        We see it daily here in Korea where we have implemented practices
        to change the daily physical contact amongst people. Simply,
        Korea has cultural practices that increase prolonged close contact.
        A) Norabangs
        C) PC cafes
        D) daily after work company dinners
        When we put a stop to those, the infection rate plummets
        When we allow these activities with masks, we get clusters that are directly traceable to the failure to wear masks.

        we saw the same thing in China. When china started its policy of quarantining sick family members, the rate of course dropped.
        But isolating the sick and asymptomatic early on, does not mean that
        HI is achieved at low number. They just changed the mixing dynamics.
        Getting to near zero cases is easy to do within 14 days as shown
        all across china. residents were allowed to leave their house 1 time
        per week. In every city the cases fell. But that did not mean they reached
        HI. They just changed mixing dynamics.

        The way you have defined HI results in a metric that changes across
        the wide variety of human behavior and has no practical meaning as a consequence.

        For example: under your definition of HI, we would have achieved
        HI here in Korea, If we went back to normal ( people congregating
        in church, in PC cafes, returning to the after work company dinners)
        AND if R[t] remained below 1, then we would have achieved HI.
        What we dont know and are unwilling to do is this:
        Test the hypothesis that the current R[t] which is below 1, will REMAIN
        below 1 if we return to normal mixing and no mask wearing.

        we know how to get it below 1. we stop mixing like we used to. we wear masks. But that’s not HI. Herd immunity is achieved for a community that has an R[t] <1 while engaging in it's normal behavior.

      • Steven Mosher:

        You use South Korea and China as examples. That’s not a choice we will make. We are making our choices now and our state and local governments will fiddle around the edges.

        Such a tight control from the above, leaves them like New Zealand. How long will this go on and at what economic costs? Having puppets dance and prove us wrong is nice. We are still the things that made us great.

        China is a lab of horrors. It worked worked for them. Good.

        You mention HI. Then there’s effective HI. Which includes other stuff. Like not opening schools. What we’re looking for is the Go signal. At low resolution, Lewis has said, that signal is pretty close, and that’s my interpretation, not his. In my opinion, he’s arguing against those that are making themselves the problem.

        We got a pretty wide landing zone, we just need to jump out of the plane. We can do this.

      • –snip–
        Our final cohort included 145 patients with mild to moderate illness within 1 week of symptom onset. We compared 3 groups: young children younger than 5 years (n = 46), older children aged 5 to 17 years (n = 51), and adults aged 18 to 65 years (n = 48). We found similar median (interquartile range) CT values for older children (11.1 [6.3-15.7]) and adults (11.0 [6.9-17.5]). However, young children had significantly lower median (interquartile range) CT values (6.5 [4.8-12.0]), indicating that young children have equivalent or more viral nucleic acid in their upper respiratory tract compared with older children and adults (Figure). The observed differences in median CT values between young children and adults approximate a 10-fold to 100-fold greater amount of SARS-CoV-2 in the upper respiratory tract of young children. We performed a sensitivity analysis and observed a similar statistical difference between groups when including those with unknown symptom duration. Additionally, we identified only a very weak correlation between symptom duration and CT in the overall cohort (Spearman ρ = 0.22) and in each subgroup (young children, Spearman ρ = 0.20; older children, Spearman ρ = 0.19; and adults, Spearman ρ = 0.10).
        –snip–

        https://jamanetwork.com/journals/jamapediatrics/fullarticle/2768952

      • > Dropping antibody counts aren’t a sign that our immune system is failing against the coronavirus, nor an omen that we can’t develop a viable vaccine.

        https://www.nytimes.com/2020/07/31/opinion/coronavirus-antibodies-immunity.html#click=https://t.co/eyUCpliy6H

      • Steven Mosher:

        —————————–
        basically all the data you work from is hopelessly confounded by
        A) differing PHYSICAL connectivity ( how many people I mix with)
        B) differing practices in regard to NPI
        —————————–

        So when South Korea and China are merged with the above, the data becomes more usable. A) is low, B) is high, and the math spits out, not much to see here. But you’ve just delayed things. Which may have merit. But also has its weaknesses. You do not get the elimination. You get shrinkage while worrying about unrealized potential. You wall yourself off on many scales. It’s like going on a diet. Here’s your report card. Do you feel bad yourself? It’s abusive. The ones that are used to that, no problem. The MSM is fat shaming. And we follow the science and the data.

        My level is set at 350,000 deaths. Which translates loosely into a lifespan of 800 years. Which is another goal we should not be pursuing at this time.

        So how to account for your two problems above? Full lockdown. Required masks. The math cleans up and simplifies. So that’s math can only be applied to certain countries. We could also do something with our smartphones about tracking. We could even listen in on people to aid with that. Do we want to do these things. If we do these things, is it a form of training?

        In the future, we could use this data to counter rioters. The illegal drug trade. We have lots of data. It’s supposed to be locked up now. But only if it fits our point of view.

      • Roger Knights

        Joshua: “Shows why it’s just insane that we’ve failed so badly at contact tracing.”

        A big part of the problem is that the fast-turnaround tests used in Korea are not allowed here. Without fast-result tests, like the ten-minute test described below, contact tracing is difficult and even pointless.

        “Out of the Way, FDA”
        [Extracts; I’ve had to omit some valuable paragraphs]
        By Robert Zubrin nationalreview.com July 30, 2020

        “Benner’s coronavirus test is currently being used in India, a country that, despite having four times America’s population and much more unfavorable living conditions, has one quarter of our coronavirus death toll. But it is not being used in the U.S.A.

        With tests such as Benner’s we could test the whole national work force every week, quarantine the infected, release the uninfected, and end the pandemic within two months. Currently 11 percent of the U.S. labor force is unemployed. If 0.5 percent drawn from those out of work were hired to test all 100 percent of the workforce, they would only have to each test 40 people per day in order to test everyone every 5 days. The cost would be substantial in absolute terms, but trivial compared with what we are now shelling out in relief payments, economic dislocation, medical bills, suffering, and deaths.

        There is only one thing stopping such an effective program from being implemented, whether at the federal, state, local, company, or individual level. That is the obstinacy of the FDA.

        Obtaining FDA approval is impossible for an innovative small biotech company such as Firebird with limited capital. The Firebird test was easily proven with simulated samples. It gives essentially no false positives or false negatives.

        By shutting out the most valuable tests, the FDA is effectively disarming America in its life-and-death struggle with the virus. The FDA regulations do not consider the possibility that a test less sensitive than the “gold standard” might be preferred in public health, sacrificing unnecessary sensitivity to get necessary on-site speed. But speed is what we need.

        False positives can always be eliminated by retesting, so that is not an issue. The FDA says, however, that it doesn’t want to “risk” tests that could produce false negatives. But by preventing mass testing, the FDA is effectively producing universal false negatives.

        It any case, risk is best understood by those who actually face it. That means those of us who are trying to keep our workplaces safe, not those who are trying to show they followed standard procedures.

        The coronavirus epidemic is a five-alarm fire. Effective action is long overdue. The FDA needs to get out of the way.”
        https://app.getpocket.com/read/3064601649

      • Roger –

        Yah. Makes no sense to me. Tests that take something like six days to get results are not nearly as useful even if they are more accurate. Yup, re-testing would be key. I can understand why initially, accuracy was the focus but we need to adapt. Also, pooled testing should be in use. Can’t understand why it isn’t.

        And why aren’t we using emergency powers to increase PPE? Medical workers are still re-using one use equipment. Why aren’t we massively producing N95 masks instead of limiting people’s ability to buy them? Makes no sense.

      • Roger –

        Yah. Makes no sense to me. Tests that take something like six days to get results are not nearly as useful even if they are more accurate. Yup, re-testing would be key. I can understand why initially, accuracy was the focus but we need to adapt. Also, pooled testing should be in use. Can’t understand why it isn’t.

      • Roger –

        And why aren’t we using emergency powers to increase PPE? Medical workers are still re-using one use equipment. Why aren’t we massively producing N95 masks instead of limiting people’s ability to buy them? Makes no sense.

      • Roger Knights

        Joshua: “Why aren’t we massively producing N95 masks instead of limiting people’s ability to buy them? Makes no sense.”

        There’s a lifehack for that:
        Putting an N95 mask [or several] in an Instant Pot [for 1 hour with no water and with a large towel for insulation] decontaminates it: study
        Last year’s hot kitchen appliance is trendy again — this time, for being a virus killer. Read in New York Post: https://apple.news/AvEzGav9KQp-xvtzRaROGQQ

  10. David L. Hagen

    Second wave Covid19 Cases and Fatalities
    Nic How well does this support your argument?
    The Ethical Skeptic plots Infection Rate, Fatality Rate, and All Cause Fatality rate, on Twitter. While the “infection rate hit 14%”, he shows the 2nd Covid19 wave cases appear to have peaked. 2nd wave Covid19 fatalities now appear to be peaking.

    https://twitter.com/EthicalSkeptic/status/1287879425669783552/photo/1

    • David
      EthicalSkeptic reaches broadly the same conclusions as I have, but more heuristically, without seeming to appreciate the importance of population inhomogeneity in social connectivity related susceptibility and infectivity, or modelling the path of the epidemic.

  11. Matthew R Marler

    But, assuming recovered individuals are immune, the pool of susceptible individuals shrinks over time and the current reproduction number falls. The proportion of the population that have been infected at the point where the current reproduction number falls to one is the ‘herd immunity threshold’ (HIT).

    I wondered whether there was an operational definition or measurable attribute whose estimated value allowed you to say when HI had been achieved.

    • What confuses it even more is “overshoot,” where infections continue dispute prevalence hitting the putative HIT.

      Might explain regions (or institutional settings) with a population infection rate at or above 60%.

      • I agree that overshoot, particularly in the absence of behavioural changes (whether voluntary or forced) that temporarily reduce transmission, is one reason for prevalence ending up high in some places.

        However, I doubt that overshoot is the most important factor for explaining why prevalence is sometimes very high. In locations where prevalence reached something like 60%, assuming it genuinely did so, population heterogeneity in susceptibility and connectivity within that location was likely to have been relatively low, and the transmission rate high. That would cause the HIT in such locations to be much higher than for the country or region as a whole.

    • Herd immunity is generally said to be achieved when the current reproduction number (R[t]) falls below 1. This generally occurs marginally before the rate of new infections begins to decline.

      • Steven Mosher

        “Herd immunity is generally said to be achieved when the current reproduction number (R[t]) falls below 1. “”

        no.no. no

        If a Population is Not practicing Any NPI and if they are mixing as they
        normally would, and if R[t] falls below 1, then you have EVIDENCE that HI MAY be achieved.

        For example. If I Locked up all citizens so that no one could leave their house R[t] would fall to zero, but herd immunity would NOT be reached.
        I

        Basically wuhan.

      • They must have quarantined all the K-Pop girls. Mosher suddenly has time to spend with us. But his comments are a very big improvement over the mindless chatter we get from PS #whatever and a few others, who drop by to snipe at Nic.

      • “no.no. no”

        I disagree with your use of the term herd immunity, but I agree that the herd immunity threshold will vary depending on people’s behaviour, which depends inter alia on NPI.

        So the fact that the HIT is low during lockdown, and has been reached then, does not mean that the epidemic will continue to decline once lockdown ends – as it must do, because continued lockdown causes great economic, health and social loss, as well as severely restricting people’s basic freedoms. Therefore, the HIT applying during lockdowns is of little relevance.

        On the other hand, people may be happy to continue with moderate social distancing, with much lesser departure from normal life, for an extended period, if necessary, so HIT estimated in those circumstances is of much greater relevance.

        That is one reason why I have focused on Sweden, where there have been only moderate restrictions, when estimating the HIT for COVID-19.

        Under unchanging social distancing, the HIT is bound to be significantly overshot. Therefore, the final level of infection under a moderate, Sweden-like social distancing scenario may well exceed the HIT under a subsequent move to a no social distancing, normal life, situation.

      • From July 15 through July 31, there were 76 CV deaths in Sweden. There are currently 66,382 active cases, with only 40 in serious or critical condition. Total deaths to date, 5,743. NYC total deaths to date 23,002.

      • > because continued lockdown causes great economic, health and social loss, as well as severely restricting people’s basic freedoms.

        Completely unintrospective subjectivity.

        You have no way to prove that shelter in place orders “cause” economic, health, and social loss in comparison to the absence of shelter in place orders – particularly with the consideration of locality-specific factors.

        It is exactly that kind of poor analysis that makes your policy advocacy suspect.

        Likewise with your facile characterization about “restricting people’s basic freedoms.” The majority of people, in this country at least, support the issuance of shelter in place orders. As such it is a basic freedom for them to have their representative democracy act in accordance with their wishes.

        The descriptor of” basic freedoms” is subjective. You’re entitled to your view. But it would be undemocratic for you and the minority of people who agree with you to dictate to a majority as what their “basic freedoms” comprise.

        The cohort who argeee with you as to the civil liberties implications of shelter in place orders already enjoy power in policy-making that is disproportionate to their numbers. It is rather remarkable to see people who enjoy such disproportionate power put on display their self-victimization and entitlement mindsets that leads them to think they’re being victimized, let alone displaying their naked condescension that leads them to believe that they should be advocating in the best interest of people who disagree with them – presumably under the misconception that they are in a better position to determine what’s in the best interests of the majority who disagree with them.

      • niclewis: Herd immunity is generally said to be achieved when the current reproduction number (R[t]) falls below 1.

        I am getting the impression that this is hard to estimate/operationalize before the new case rate falls dramatically from its peak. Consider the estimates of the time course of Re in Tkachenko et al.

    • That’s not good. Adds yet another wrinkle to the whole “just the flu, let everyone get sick” mentality.

    • Steven Mosher

      ya 1/3 of patients have sequelae that dont seem to go away.

      • Steven Mosher on July 31, 2020 “ya 1/3 of patients have sequelae that dont seem to go away.”
        Can I politely ask what you mean by this comment?
        The problem us the word patient I guess.
        It is clear that most people who catch covid do not get ill. Often stated that up to 99% of people recover without sequelae.
        The moment you use the word patient you are talking about a small sick subset of all people who catch covid. Elderly people, sick people, diabetics etc.
        such people always have complications after any serious illness that persist in at least a 1/3 of them.
        It is not covid specific, your misinterpretation.
        The problems of low blood pressure and pressure areas lead to renal failure strokes and gangrene. Covid throws in an extra serve of thrombosis but basically a third if all seriously ill ICU patients will have ongoing sequelae, especially older patients.
        I am grateful you raise issues and do not consider them drive bye. In this case though the takeaway message is that 99% of covid infected people have no sequelae.
        Ta.

      • angech: I am grateful you raise issues and do not consider them drive bye. In this case though the takeaway message is that 99% of covid infected people have no sequelae.

        The article, and Mosher’s comment, were about the subset of those who get sick (patients”) and recover.

        Our attention seems to wander between the large number of people who have slight or no symptoms, and the small number who suffer seriously and of whom some die. It’s like “How many grannies have to be put at risk to get an auto factory (and its supply chain) back to full production?” “Your granny?”

    • The JAMA article about cardiovascular consequences of COVID-19 had multiple elementary statistical errors and has now been corrected. The authors displayed such incompetence that I don’t think much weight should be placed on the corrected version.

    • Joe - the non epidemiologist

      In addition to Nic’s comments,
      A) Its premature to ascertain whether any damage from Covid is permanent
      B) It ignores centuries of medical knowledge regarding the body’s recuperative and healing powers.

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  13. Nic, how do you think the “G” mutation will affect the curves? It supposedly increases the infectivity, but not the severity of the disease.

    • LLD, a mutation that increases infectivity but not severity can be expected to become very widespread, and would cause a pro rata increase in the basic reproduction number R0, assuming no change to the latent or infective periods. A higher R0, with unchanged variability in susceptibility, leads to a higher herd immunity threshold. My modelling suggests that, for a case with rather lower variability than Aguas et al find (CV=1.5 for connectivity combined with CV=0.8 for susceptibility), the HIT increases roughly proportional to R0, at least over the range 2.4 to 4.

    • LDD: If the viruses with the G mutation were 10% more easily transmitted than those without, and if you assume that there have been 30 cycles of infection followed by transmission since the G mutation evolved, then you would expect 1.1^30 or 17.5 times as many new viruses with the G mutation as new viruses without the G mutation – assuming that we started with equal numbers of both. The non-G viruses did have a head start, but there were relatively few cases at the time they diverged. In theory, if you could find a location where the pandemic began with roughly equal numbers of both infections and relatively few cases were brought in from the outside, it might be possible to do an accurate calculation.

      A simple exponential growth model may be overly simplistic, but a small advantage in transmissibility almost certainly translates into a big advantage over 30 (or more) generations. Since the non-G virus strain is still common, I suspect this means that the G virus has a very small advantage (less than 10%) in transmissibility over the parent strain. The G strain could be more or less deadly than the parent strain, but researchers would have to carefully control for age and co-morbidities to be able to detect that difference.

  14. One of the questions related to modeling heterogeneity.

    –snip–
    … new evidence from South Korea shows that the age of children is also a vital factor to consider, with a large study indicating that older children seem to spread coronavirus on par with adults, even if younger children do not.
    –snip–

    Looks like a pretty solid study.

    https://www.sciencealert.com/older-children-transmit-covid-19-as-much-as-adults-do-new-evidence-suggests

    • Also related…and very interesting.

      –snip–
      Among 10,592 of these household contacts tested in the study, 11.8 percent of people ended up also having COVID-19, whereas just 1.9 percent of non-household contacts (48,481 individuals all up) had the virus.
      –snip–

    • Thanks; I’ll take a look.

      • Jeff –

        > Given that you believe the president is uniquely responsible for all things Covid19:

        Given that I never remotely said anything like that, let alone think it, I’m not going to bother t reaond to anything beyond that conditional clause.

        He’s uniquely responsible for some things. Partly responsible for others. And not at all responsible for other things.

        And I’d say that would apply to positive as well as negative outcomes for the last two descriptors, although with the positive they are fewer and farther in between.

        That is obviously always true for the impact of any president, for example on the economy, state of race relations, etc.

    • Steven Mosher

      thanks joshua I was going to post that.

      There are a large number of data points that Nic just plain ignores.

      probably doesn’t read korean

      Any way

      here is another

      https://www.nytimes.com/2020/07/09/nyregion/nyc-coronavirus-antibodies.html

      Bottom line:

      There are 3 areas of uncertainty

      1 “natural” immunity. Investigations into T cells are forth coming.
      Nic will probably discount them. Instances of seroprevalence
      well in excess of Nic’s assumptions ( 70%+ in some)
      2. “variations in mixing” Congregate settings show very large attack
      attack rates even when NPI are used. 50% or more,
      3. Efficacy of NPI. Very hard to even ascertain how well people follow policies

      With those three unknowns you can play a lot of games.!!
      and with deadly consequences!!

      • From the CDC:
        “Nonpharmaceutical Interventions (NPIs) are actions, apart from getting vaccinated and taking medicine, that people and communities can take to help slow the spread of illnesses like pandemic influenza (flu). ”

        Useful reminder, that word “slow.” It doesn’t mean eradicate or stop. The only thing that will stop a virus is herd immunity- hopefully assisted by a vaccine.
        The United States is in month seven of a highly contagious virus. It hit several cities hard. The number of “cases” from January-May is ridiculously undercounted (anyone really believe the mortality rate in France was 15%? Anyone?) The “surge” today is thanks to a surge in testing- The worst day in Virginia hospitalization wise was April 12- 3,000 tests were done that day, 484 new cases identified, 126 new hospitalizations. The last 8 days in Virginia averaged – 18,272 tests per day, 1,077 new cases per day, 17 new hospitalizations per day.
        The 126 hospitalizations per day happened 30 days after lockdown. The 17 per day is more than 30 days after “reopening.” Anyone who believes that herd immunity hasn’t contributed significantly to that needs to do their own science and explain why.
        Who is it that’s fond of saying “do your own science?”

      • Steven
        You are not thinking straight.
        There is nothing in the Korean study that Joshua linked to that cuts against anything I have argued or modelled.

      • Prevalence in Queens, NYC, is most likely substantially lower than 68%. That figure came from a far from random sample: the tests were taken at an urgent care center. The article quotes Prof. Denis Nash, an epidemiology professor at the CUNY School of Public Health, as follows:

        “For sure, the persons who are seeking antibody testing probably have a higher likelihood of being positive than the general population,” said Professor Nash. “If you went out in Corona and tested a representative sample, it wouldn’t be 68 percent.”

        Moreover, one would expect individual neightbourhoods of a city to have less variability in susceptibility and social-connectivity related infectivity than the city as a whole, or even more so to that in the state containing the city. The smaller the sub-unit, the lower the expected variability within it. And in densely populated areas one would expect the reproduction number to be much higher than for the population as a whole, and hence the HIT to be higher. There may be demographic differences that increase the susceptibility of the Queens’ population to infection. Moreover, when an epidemic progesses unimpeded the final proportion of people infected will be well above the herd immunity threshold. So it is not terribly surprising that a relatively high percentage of the Queens population became infected.

        Incidentally, I suspect that most of the people in NYC who had COVID-19 antibodies were infected prior to lockdown or before it became fully effective. In the UK, the chief medical officer has recently said that the epidemic was probably already past its peak (implying herd immunity had been achieved) prior to lockdown.

        The NY Times article cites a more comprehensive survey on antibody rates conducted by New York State. It says “That survey suggested that roughly 21.6 percent of New York City residents had antibodies.” The study itself (https://doi.org/10.1101/2020.05.25.20113050) appears to show 20.2% cumulative incidence of COVID-19, or 22.7% when adjusted for the test sensitivity and for not all infected people generating detectable antibodies.

      • > Moreover, one would expect individual neightbourhoods of a city to have less variability in susceptibility and social-connectivity related infectivity than the city as a whole, or even more so to that in the state containing the city. The smaller the sub-unit, the lower the expected variability within it.

        Actually, I remember hearing that some?/quite a bit?/many? of the people who came to that clinic didn’t live in that neighborhood. It’s prolly wrong to assume that the seroprevalence found at that clinic is just a function of the neighborhood in which it is located.

      • > The “surge” today is thanks to a surge in testing-

        This is clearly not accurate – as evidenced from the rise in hospitalizations and deaths (after a lag) in parallel with spike in cases, and in the exact same locations as where the cases spiked. Deaths started rising again significantly from 3 weeks to 1 month after the cases started to surge and they have continued rising since.

        Not to say that an increase in testing isn’t a contributing factor, or that the increase in identification of asymptomatic cases or cases among young people aren’t important considerations. The rise in cases outpaced the rise in hospitalizations and deaths. Of course, improved therapeutics should also be factored in.

        It was bad enough that people go out in front of the uncertainty a month ago to confidently attribute the rise in cases to a rise in testing – but to still hold on to that claim despite the subsequent evidence that eliminates some of the uncertainty and disproves the claim, is just weird.

        Why would anyone do that? Weird.

      • What’s criminal is that we actually know so little about what caused the increase in cases. In places like Korea or Hong Kong, when they have an outbreak they do great work in uncovering the dynamics.

        Why don’t we know more? Because our testing stinks (such long turn around times to get results) and our contact tracing stinks (in part, because there’s such a long turn around time to get the results of the testing). .

        And why do our testing and contact tracing stink? Well, the explanation is multifactorial, but one of the main factors is that we have a widespread cult phenomenon in this country (that is well-represented in these threads).

      • Joshua: “It was bad enough that people go out in front of the uncertainty a month ago to confidently attribute the rise in cases to a rise in testing – but to still hold on to that claim despite the subsequent evidence…”

        According to the statistics from the EU, the mortality rate in the EU/EEA +UK is 10.7%.
        According to today’s stats from the Washington Post, the mortality rate in the US is 3.4%

        Given that you believe the president is uniquely responsible for all things Covid19: Which is it? Did Donald Trump provide testing that gives us three times more accurate picture of case counts? Or did Donald Trump do three times better at controlling the virus (slowing it’s spread and treating) than the EU and, therefore, saved tens of thousands of lives? Or are progressives so uniquely devoid of ideas that they can think of nothing else to do than inaccurately politicize a virus?
        I think it’s a combination of all three.

        EU stats: https://www.ecdc.europa.eu/en/cases-2019-ncov-eueea
        US stats: https://www.washingtonpost.com/graphics/2020/world/mapping-spread-new-coronavirus/?itid=sf_coronavirus_subnav

      • Roger Knights

        Joshua: “Why don’t we know more? Because our testing stinks (such long turn around times to get results) and our contact tracing stinks (in part, because there’s such a long turn around time to get the results of the testing).”

        I posted extracts from an article saying that the fault for the long turnaround time is the FDA’s. My comment is at https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-922517

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  17. Nic: It is clear that people vary widely in the seriousness of the medical conditions that arise from infection with SAR-CoV-2. This is one possible definition for “variation in susceptibility”. However, the course of a pandemic is not determined by the seriousness of the illness a virus causes in a range of patients; the course of a pandemic is determined by how easily the person in question TRANSMITS to another people. Really deadly viruses like Ebola spread slowly because they incapacitate a patient too quickly and scare those in contact with the patient. Really deadly viruses slowly evolve into less deadly strains because such strains are transmitted more efficiently. In the case of COVID, there isn’t much correlation between the level of viral RNA and the seriousness of the resulting illness, but infectivity most likely does depend of the level of viral RNA in the respiratory tract of infected patient – relatively independently from how ill they are. Totally asymptomatic patients do have lower levels of viral RNA than symptomatic patients, but a pre-symptomatic patients often has lower levels of viral RNA after symptoms appear. Coughing does help spread droplets and aerosols, but a study on influenza showed that infectious aerosols are generated by shear forces in the narrowest air passages and don’t require coughing. Chest images show “ground glass” regions typical of viral infection in some otherwise asymptomatic patients. For all of these reasons, I think it makes sense to focus on the concept of “variation in connectivity” (or transmissibility) rather than “variation in susceptibility.”

    Even worse, there are reports that lower levels of antibodies are found in patients after mild or asymptomatic infections and the levels of these antibodies are already falling. A person who wasn’t very susceptible to COVID might not be protected from re-infection for long enough to count towards the development of herd immunity. (I’m not a big fan of this idea, but it has gotten significant publicity lately.)

    • Frank
      ‘It is clear that people vary widely in the seriousness of the medical conditions that arise from infection with SAR-CoV-2. This is one possible definition for “variation in susceptibility”.’
      It’s not using “susceptibility” with its usual meaning, which is how easily a person can be infected, irrespective of how severe the symptoms of their infection. That is the meaning I use.

      The fact that few antibodies are formed or the anitbody level falls quite soon doesn’t mean that a person isn’t, or doesn’t remain effectively immune to SARS-CoV-2. Such individuals normally form and retain memory Bcells and T-cells that should suffice to provide effective immunity or near-immunity after antibodies have dwindled.

      ‘I think it makes sense to focus on the concept of “variation in connectivity” (or transmissibility) rather than “variation in susceptibility.”

      I think both are relevant, but in my modelling I provide for “variation in connectivity” to have a considerably stronger effect than “variation in susceptibility.”

      • “Memory B cells (MBCs) are a B cell sub-type that are formed within germinal centers following primary infection. Memory B cells can survive for and repeatedly generate an accelerated and robust antibody-mediated immune response in the case of re-infection (also known as a secondary immune response”
        Antibodies and antibody responses can be very confusing when looking at immunity. The initial antibodies that develop, IGM, are replaced by longer lasting IgG and the levels can persist forever or appear to drop away to nothing or sometimes, like in HepB take a long time to develop.
        This results in people misinterpreting the immunity of the person or the cause of their immunity. One often sees misleading comments with Flu vaccines saying the efficacy of the vaccine wears off after a few months. The reality is the efficacy is always there, It is just the antibody level that has dropped because there is no infection to respond to. If the virus does get caught the B cells aided by the T cells, kick into overdrive producing masses of the antibody needed.
        in the seeming absence of the antibodies, which are always there, but dormant it is easy to think that other causes of resistance might be important when really it is the antibodies that kick in grabbing the virus and then allowing the T cells to help.

  18. Nic You have certainly convinced me that the mathematical equations describing the dynamics of pandemics can be modified in such a way herd immunity is realized at an earlier stage. The relevant question now is whether the slowing that has been observed in this pandemic is due to substantial heterogeneity in susceptibility or changes in behavior and public health policy.

    The 1918 influenza pandemic occurred in multiple waves and some evidence exists that each wave was brought to a halt by a combination of fear and public policy. “Social distancing” appears to be a term that was used a century ago. The same influenza strain apparently also contributed to seasonal influenza for many years after 1920. It is possible that pandemics don’t end because the population reaches herd immunity, but because fear reduces contacts between people. A search for “herd immunity” and “1918 pandemic” turned up surprisingly few papers and no one citing herd immunity as the reason that pandemic ended.

    R_0 for the 1918 pandemic in some areas was 1.6-2.0, suggesting that fear and public policy could have brought that influenza pandemic to a near stop well short of herd immunity (several times) more easily than the same measures have slowed the current COVID pandemic. And fear in 1918 was a much more powerful force, because that strain of influenza killed many in the prime of life. No matter how well your mathematics fits an observed slowdown (say in Sweden), the same slow down probably can be explained by a model that includes fear and public policy as factors. However, it is difficult use heterogeneous susceptibility to explain: three waves of influenza in 1918, the Washington choir super-spreader event, the Marion prison, etc. I wouldn’t be surprised if peer reviewers were asking Gomes et al to discuss whether such natural experiments are inconsistent with the hypothesis in their paper.

    • I omitted some references that discussing the three waves of the 1918 pandemic and how some researchers think the pandemic was successfully but not permanently interrupted by fear and public health policy:

      1) “The 1918 influenza pandemic in New York City: age‐specific timing, mortality, and transmission dynamics”.
      Results: “Four pandemic waves occurred from February 1918 to April 1920… The distribution of age‐specific mortality during the last three waves was strongly correlated (r = 0·94 and 0·86). With each wave, the pandemic appeared to spread with a comparable early growth rate but then attenuate with varying rates.” … “We propose mechanisms to explain the timing and transmission dynamics of the four NYC pandemic waves.” https://onlinelibrary.wiley.com/doi/full/10.1111/irv.12217

      If the most susceptible had been depleted by earlier waves, the early growth rate of subsequent waves should have been slower.

      2) “Quantifying social distancing arising from pandemic influenza”.
      Abstract: “Local epidemic curves during the 1918–1919 influenza pandemic were often characterized by multiple epidemic waves. Identifying the underlying cause(s) of such waves may help manage future pandemics. We investigate the hypothesis that these waves were caused by people avoiding potentially infectious contacts—a behaviour termed ‘social distancing’. We estimate the effective disease reproduction number and from it infer the maximum degree of social distancing that occurred during the course of the multiple-wave epidemic in Sydney, Australia. We estimate that, on average across the city, people reduced their infectious contact rate by as much as 38%, and that this was sufficient to explain the multiple waves of this epidemic. The basic reproduction number, R0, was estimated to be in the range of 1.6–2.0 with a preferred estimate of 1.8, in line with other recent estimates for the 1918–1919 influenza pandemic. The data are also consistent with a high proportion (more than 90%) of the population being initially susceptible to clinical infection, and the proportion of infections that were asymptomatic (if this occurs) being no higher than approximately 9%. The observed clinical attack rate of 36.6% was substantially lower than the 59% expected based on the estimated value of R0, implying that approximately 22% of the population were spared from clinical infection. This reduction in the clinical attack rate translates to an estimated 260 per 100 000 lives having been saved, and suggests that social distancing interventions could play a major role in mitigating the public health impact of future influenza pandemics.
      “https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226987/

      3) “The effect of public health measures on the 1918 influenza pandemic in U.S. cities.”
      Abstract: During the 1918 influenza pandemic, the U.S., unlike Europe, put considerable effort into public health interventions… There was also more geographic variation in the autumn wave of the pandemic in the U.S. compared with Europe, with some cities seeing only a single large peak in mortality and others seeing double-peaked epidemics. Here we examine whether differences in the public health measures adopted by different cities can explain the variation in epidemic patterns and overall mortality observed… In the subset of 23 cities for which we had partial data on the timing of interventions, an even stronger correlation was found between excess mortality and how early in the epidemic interventions were introduced. We then fitted an epidemic model to weekly mortality in 16 cities with nearly complete intervention-timing data and estimated the impact of interventions. The model reproduced the observed epidemic patterns well. In line with theoretical arguments, we found the time-limited interventions used reduced total mortality only mod-erately (perhaps 10–30%), and that the impact was often very limited because of interventions being introduced too late and lifted too early. San Francisco, St. Louis, Milwaukee, and Kansas City had the most effective interventions, reducing transmission rates by up to 30–50%. Our analysis also suggests that individuals reactively reduced their contact rates in response to high levels of mortality during the pandemic.
      https://www.pnas.org/content/pnas/104/18/7588.full.pdf

      Given enough intervention parameters or susceptibility parameters, one can fit “any” pandemic data.

      • “Given enough intervention parameters or susceptibility parameters, one can fit “any” pandemic data”.

        I think you’re right about that. It seems the relevant factors include degrees of:

        1- innate immunity that may protect many young people
        2- T cell resistance that may protect some older folks
        3- people who have actually been infected and have antibodies
        4- distancing behavior whether by culture, fear, or mandate

        #1 is probably high among the young
        #2 is largely unknown
        #3 is low in most populations that have been tested
        #4 can vary greatly from country to country, state to state, even city to city

        So with a major variable unknown and another varying greatly from place to place and not easily measured or quantified, any projection can be made. Some retrospectively will turn out to be right.

      • Above I wrote: “Given enough intervention parameters or susceptibility parameters, one can fit “any” pandemic data”.

        That statement should be revised. It is hard to explain a multi-wave pandemic (caused by a effectively homogenous strain of virus) by relying only on variation in susceptibility. Explaining a multi-wave pandemic requires something that changes with time besides immunity – which only increases with time.

        Unfortunately, we don’t have as definitive data about the 1918 pandemic as we would like (though the causative agent of the later waves was sequenced around 2005). The main source of data is “excess deaths”. Were all three waves caused by the same virus? (The first wave apparently was less deadly to middle age people.) Did getting infected in an earlier wave prevent re-infection in later waves? (Probably in the case of the second and third waves; possibly in all three.)

    • Surely variation in connectivity – which causes near perfectly correlated variability in both susceptibility and infectivity – is the prime explanation for super-spreader events.

      I think individual prisons are much more homogeneous locations, particularly as regards connectivity, than a whole country or region, and they are high density, largely indoor settings. So one would expect the HIT to be high in them.

      I agree that people’s behaviour changed in reponse to the epidemic because of the fear factor, together with legal restrictions, which reduced transmission and (temporarily) lowered the HIT. But behaviour has been returning towards normal, particularly among the young and in countries where the government has relaxed restrictions and didn’t pursue a “project fear” approach. Life sounds back fairly much to normal in Sweden now, but COVID-19 infections and deaths are continuing to decline.

      • Joe - the non epidemiologist

        without praising or condemning sweden, most all the countries that had massive infection rates and death rates early are currently having near zero infection rates and death rates ( at lease least relatively low./zero rates)
        England,
        france
        spain
        sweden
        New york
        The observation is that letting the virus run its course may be the best short term and long term solution.

      • Interesting. All countries…er, except NY.

        US has had a high infection and death rate for an extended period – but instead of the US you singled out, NY

        Spain infection rate has recently spiked. Too early to say if it will last

        France’s 7-day average infection rate is still well below its highest, but it has doubled over the past weeks

        Germany has been seeing a rising trend in recent weeks.

        India has been on a long, exponential-like increase in cases and a long steady climb in deaths.

        Brazil has seen a long steady increase in cases and deaths rose quickly then plateaued and stayed there.

        And along with the dramatic reductions in death rates in those counties you mentioned, none of them have let the virus run its course, yet you point to their low death rates as evidence its smart to let the virus run its course.

        But other than that, your comment was spot on.

      • Steven Mosher

        “I think individual prisons are much more homogeneous locations, particularly as regards connectivity, than a whole country or region, and they are high density, largely indoor settings. So one would expect the HIT to be high in them.”

        wrong. wrong wrong

        serology in NY prisons showed a very low infection rate.

        meanwhile India clocked in with 23% in Dehli.

        it is NOT SIMPLY THE LOCATION.

        it is a combination of factors for SSE

        A) large numbers of people.
        B) close closed setting. Like 15 people in a room with no
        ventilation
        c) EXTENDED face to face contact.
        d) loud talking, chanting, singing, ect.

        so 2 guys in a prison cell. not gunna happen, you get household attack rates.
        mess hall?
        depends
        what is seating like?
        what is ventilation like?
        how long are they seated?

      • Joe - the non epidemiologist

        Joshua – you have an amazing ability to cherrypick, and miss the forest for the trees.

        I singled out NY since that state (along with the NE corridor (NY, MA, CT & NJ) all had high early infection and deaths. Whereas, their rates are down dramatically.

        Spain is having a relatively mild spike in infection and almost trivial insignificant minor spike in deaths less than 0.02% IFR using a 3 week delay from infection to death. granted it is approximate, but a reasonable estimate.

        France has had a minor increase in infection rate since the middle of june – while the death rate remains almost non existent.

        Same general trend with England/UK

        Same general trend with Sweden

        Josh – I am going to repeat my original statement – since you did not respond to primary point .
        “without praising or condemning sweden, most all the countries that had massive infection rates and death rates early are currently having near zero infection rates and death rates ( at lease least relatively low./zero rates)”

        Your mention of Brazil & India are not relevant to my comment – especially since they are too early in their infection cycle to have any merit or insight

      • “it is a combination of factors for SSE
        A) large numbers of people.
        B) close closed setting. Like 15 people in a room with no
        ventilation
        c) EXTENDED face to face contact.
        d) loud talking, chanting, singing, ect.
        so 2 guys in a prison cell. not gunna happen, you get household attack rates.”

        I agree that not all prisons are the same, and that although the environment within individual prisons may be fairly homogeneous it may well vary greatly between different prisons. Although the HIT would be high in each prison relative to what it would have been if its population had been less homogeneous, it would still be low in absolute terms in a prison where the contact rate is low. That may have resulted from measures taken by individual prison authorities, of course – lock-up lockdowns.

  19. Nic, thanks for this work which has been excellent. How do we get you onto SAGE?

    We need people there who understand how models actually work.

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  21. I posted this elsewhere, but it wouldn’t hurt to post it here as well:

    > A New Understanding of Herd Immunity
    The portion of the population that needs to get sick is not fixed. We can change it

    https://t.co/FLwjQteJKm?amp=1

    • A lot of it focuses on Gomes and the implications of here work – among which is related to the impact of shelter-in-place orders, or social distancing without any such orders, on heterogeneity and therefore the modeling of herd immunity.

      Lots o’ uncertainty to be had – which I’ll note that Gomes acknowledges even as she is confident in the application of her findings to the Covid epidemic. Too bad that lots o’ people treat the uncertainties selectively.

    • Joshua: It is worth noting that epidemiologists estimate R_0 from the early stage of a pandemic, before fear and policy have reduced the rate at which the virus spreads between people. They use that R_0 for calculating herd immunity (for example, in a vaccination program) because you don’t want uncontrolled spread when people’s behavior and policy return to “normal”.

      Estimates of R_0 vary with locality. In the US and most of the world, the cumulative number of cases was doubling every two to three days in the early stages; 2.5 days in the case of the US in March. Big states began imposing lockdowns over several days beginning on 3/19 (and Americans saw lines outside NYC hospitals on TV), and the doubling time began increasing about week later. By 4/10, the rate of new cases was falling. In Sweden, however, the doubling time in March was closer to 5 days for some reason. For some reason – population density?, hygiene especially in public?, a tradition of staying home with a fever? – R_0 in Sweden was about half as big as in most other countries. This may partly explain why Swedish epidemiologists didn’t recommend a lockdown. Unlike the US, the doubling time for cumulative cases in Sweden didn’t abruptly change in early April, but it did gradually lengthen. Whether that gradual lengthening is due to approaching herd immunity or a gradual change in behavior isn’t clear. Models that incorporate fear as a factor in 1918 use a factor proportional to the current death rate, but the contacts that resulted in death occurred perhaps a week earlier in 1918 and more than two weeks with coronavirus.

      • Frank –

        > his may partly explain why Swedish epidemiologists didn’t recommend a lockdown.

        Yes.

        One of the thing that discussants anxious to draw the conclusion that Sweden should be the model for everyone else sometimes miss is the basic and fundamental logic of what they’re arguing.

        IOW, they don’t see that the reason why Sweden chose the path it chose is, at least in part, because of certain basic conditions. Would they have chosen the “herd immunity” path if they didn’t have the highest rate of single-person households in Europe? If they didn’t have such low rates of comorbidites in their population, such a good infrastructure for people to work from home, such good baseline health status, relatively low population density (averaged over the whole country), high general sense of social responsibility, high standard of living and mean income, good healthcare services available and affordable to everyone, low rate of multi-generational households, good social safety net to make sure that people wouldn’t suffer without government loans or ramped up unemployment, if they were located in closer proximity to Lombardy, if they had higher rates of travel to/from China???? Etc. Etc.

        The same logic problem applies in the States – where people want to compare outcomes from different interventions in different sates merely by comparing outcomes, without controlling for the simple logic that differential outcomes are, to a large degree, a function of different starting conditions and that the implementation of different policy responses are likely to a large degree reflective of those different starting conditions.

  22. Also (reposting from another thread), related to Gomes’ modeling – some quick responses from an infectious disease modeler. Not much in depth but still worth looking at:

    https://threadreaderapp.com/thread/1286934165967892480.html

  23. Work on evaluating non-pharmaceutical interventions in Brazil.

    https://science.sciencemag.org/content/early/2020/07/22/science.abd2161.full

  24. Info on excess mortality in Iquitos City, in Peru – where preliminary seroprevalence indicates an infection rate of 71%

    https://twitter.com/Gabc91/status/1285641443172851712

  25. ” I also projected, based on their declining trend, that total COVID-19 deaths would likely only be about 6,400. Subsequent developments support those conclusions. Swedish COVID-19 deaths have continued to decline, notwithstanding a return to more travel and less social distancing, and are now down to 10 to 15 a day. According to the latest Financial Times analysis,[12] excess mortality in Sweden over 2020 to date was 5,500, or 24%. ”

    And now, 2 weeks after that analysis, deaths are up to 5700 – 100 more each week. If that rate continues (and a 14-day cumulative number of deaths running at 1.6 per 100,000 – the worst in Europe- suggests it could) it will be less than 2 months before your prediction is passed. Maybe better to change it to “only” at least 6400.

    • Reported deaths in Sweden two weeks ago were 157 below those currently reported (and 45 higher than the FT figure of excess mortality). That’s 79 more per week, not 100. Over the past four two-week periods, the increases in reported deaths have been declining quite strongly 471, 394, 212 and 157. On that evidence, I see no reason to change my projection.

    • Steve Fitzpatrick

      Why do you think there will be 100 covid 19 deaths per week in Sweden in the next months when the trend over the past 8 weeks has been continuously downward, and the rate is already below 100? It is possible that by the end of the year Sweden will pass 6400 deaths, since there remain more rural regions were the virus has not spread as much, and these people certainly could catch the virus and add slowly to the total deaths. But that said, Nic appears to be right: the available evidence suggests a continuing decline in rate of deaths.

      • I don’t make predictions or state that “only” a certain number of people will likely die. Nic used a source which stated that there were 5500 deaths in Sweden up to the 13th of July. When I checked another source yesterday (which presumably used a figure up to the 27th of July, i.e. 2 weeks later) the total had grown to 5700, i.e. 200 more in 2 weeks, which means 100 more per week.
        I don’t claim or predict anything but if that trend were to continue, especially as levels are increasing in many countries at the moment (and Sweden has the second highest 14-day cumulative rate per 10000 in Europe – after Romania, although it was the equal worst with Romania yesterday – who knows what it will be tomorrow: I don’t make predictions), Nic’s prediction of “only” 6400 deaths would be reached within 2 months.
        He stands by his prediction. We’ll see…

      • stevefitzpatrick

        “I don’t make predictions”. But you sure have no problem criticizing Nic’s… which suggests you believe his rational is mistaken. Very strange take.

      • Murph,

        Well Sweden had 24 deaths reported from Jul 21-Jul 28. Only 39 new cases on last day reported. Of 65,495 currently infected cases there are only 43 in serious or critical condition. Based on your logic and prediction-denial prediction, Nic’s prediction looks quite plausible.

  26. Nic Lewis is Mr. Jump to Conclusions on Covid and I suspect he has no idea what he is speculating about.

    The pandemic is still in progress so there are no experts yet.

    The number of people infected may be much larger than we suspect as many have no symptoms or mild symptoms.

    The disease spreads quickly, mainly kills off the elderly and then death rates per day decline.

    People in southern states move indoors more for AC in hot weather, then they get an infection spike too.

    I guess the remaining “herd” is more immune to Covid death after the vulnerable elderly die off from it, often in nursing homes.

    Nic Lewis speculates to get himelf published.

    Not to advance medical science.

    • Don Monfort

      You suspect, but you can’t prove anything, because you are ignorant. Just offer up a bunch of vague generalities and a pathetic attempt at mind reading to divine a motive. You are a crank. We had enough cranks here, already.

      • Richard Greene

        Don Monfart
        Your character attacks on me are not arguments. They do not make you appear to be intelligent. If that was your goal, then you are a great success.
        Richard Greene

      • You are the pretentious little character assassin. Based only on your foolish and very ignorant suspicions, your argument is that Nic speculates to get published. That is stupid and everyone here but you knows it’s false.

    • Richard harsh words, not sure why you seem so upset?
      You have a interesting way of defining expertise which would rule out all experts.
      Nic puts a lot of time and energy into his thoughts and has a lot of expertise in the subject which he is us writing about. Which is applying maths and statistics to a model projecting possible herd immunity.
      He is for all intents and purposes an expert in this field.

  27. David L. Hagen

    Re Vitamin D Deficiency & Covid-19
    Nic Lewis There are growing statistics on Vitamin D deficiency correlating with Covid 19 fatalities. That varies with country and/or latitude. Adjusting for that may strengthen your analysis. e.g., See:
    Daneshkhah A, Agrawal V, Eshein A, Subramanian H, Roy HK, Backman V. The possible role of Vitamin D in suppressing cytokine storm and associated mortality in COVID-19 patients. MedRxiv. 2020 Jan 1.
    Biesalski HK. Vitamin D deficiency and co-morbidities in COVID-19 patients–A fatal relationship? NFS Journal. 2020 Jun 7.
    Fernandes AB, de Lima CJ, Villaverde AG, Pereira PC, Carvalho HC, Zângaro RA. Photobiomodulation: Shining Light on COVID-19. Photobiomodulation, Photomedicine, and Laser Surgery. 2020 Jul 1;38(7):395-7.
    Annweiler C, Cao Z, Sabatier JM. Point of view: Should COVID-19 patients be supplemented with vitamin D? Maturitas. 2020 Jun 8.
    Pugach IZ, Pugach S. Strong Correlation Between Prevalence of Severe Vitamin D Deficiency and Population Mortality Rate from COVID-19 in Europe. medRxiv. 2020 Jan 1.

    • David,
      Thanks. I will look at these articles. There certainly seems to be evidence that vitamin D deficiency is bad both for COVID-19 outcomes and more generally. As you say, this may be correlated across countries with COVID-19 mortality.

      The evidence that a higher than currently recommended vitamin D level is beneficial seems less clear. I’m also not sure it is proven that taking vitamin D supplements helps that much, at least when the existing level exceeds the recommended level.

    • That last one is a textbook correlation doesn’t equal causation example, although they do appropriately caveat in the discussion (after saying vitamin D “explains” the correlation – but I know that’s fairly standard language).

    • That said, Annweiler et al. explicitly using Hill’s criteria for causation is good to see.

  28. Nowhere near herd immunity hear in Antwerp, Belgium.
    Covid19 cases are spiking sharply, lockdown returns with curfew added.

  29. https://voer.edu.vn/file/55967

    Here I will jump a shark. Those vulnerable to the virus are the hares. The virus is the lynx. The success of the virus follows the vulnerable. We are looking at the hare population attributes and inferring the virus population’s attributes.

    So we try to break this natural relationship because after all, we are better than hares. Gods really. But us Gods want to go to work and socialize. And not be a college student who doesn’t get to go to college or a child who doesn’t get to go to school and socialize and eat.

    This virus is a lot more successful than we are in the whole evolution game.

  30. Swedish health officials said Tuesday that another 3,000 deaths from the novel coronavirus were likely in the country, known for its controversial softer approach to curbing the spread and much higher death toll than its neighbours.

    The projection comes from one of three potential scenarios presented in a report from the country’s Public Health Agency on Tuesday.

    In the worst scenario, where COVID-19 was expected to follow a traditional pandemic trajectory, over 5,800 more deaths related to the virus could follow.

    That would be more than double the 5,646 deaths, out of 78,166 confirmed cases, so far recorded since the start of the pandemic.

    https://medicalxpress.com/news/2020-07-covid-deaths-sweden-health-agency.html

    • I guess that would put Sweden on pace for ~900-1100 per million. If the US managed a similar pace we would probably have about 350-400,000 deaths.

      Everybody good with that?

      • Jimmy, why would anybody be good with 400k deaths? You are a ghoul and what that rhymes with.

      • James –

        Don’t worry.

        Don explained there would only be @6,000 deaths.

      • Hi James. If we had France’s reported mortality rate (over 13% of reported cases ended in death), the death toll in the US (currently 3.4% mortality rate) would be 563,000 deaths so far- if we managed to be a good at governance as the French of course.

        You’re fine with that, right?

        Which is it- did the US outperform the EU in testing (giving a more accurate case count), or in controlling the virus (reducing mortality)?

        In terms of public response to protect citizens- which would you prefer: a low mortality rate with a more accurate case count, or a high mortality rate with a less accurate case count? Does the fact that the latter would allow our “elite” to play political games in the newspapers and on blogs compensate for the additional deaths?

      • It’s for your own good because we can’t handle the truth.
        https://i.redd.it/lio640f38ld51.png

        Louie Gohmert — a Texas Republican who has been walking around the Capitol without a mask — has tested positive for the coronavirus.

        Gohmert was filmed yesterday speaking face to face with AG Barr at a house hearing without a mask.

      • Joshua,
        The graph came from forum.arctic-sea-ice.net where there is a sub thread on COVID-19.
        For the CDC vs HHS data controversy put this query into the Google or Microsoft news search engines:
        Google: CDC HHS data change when:7d
        Microsoft: CDC HHS data change (manually select ‘last 7 days’)

        The big news on the forum these days is the the record breaking loss of Arctic ice.
        As of 7/28/2020:
        Sea ice area loss on this day 100 k, 47 k more than the 2010’s average loss of 53 k
        – 2020 area is at position #1 in the satellite record.
        – 2020 Area is 615 k less than the 2010’s average
        – 2020 Area is 1,430 k less than the 2000’s average
        – 2020 Area is 456 k less than 2016
        – 2020 Area is 315 k less than 2019
        – 2020 Area is 237 k less than 2012

      • Hi Jack,
        That chart must look amazing for France.
        i take it that your “argument” here is that the US is undercounting cases,which would, of course, mean the US did even better at saving lives than the formal statistics show. Our mortality rate is even lower than HHS reports.
        Why would HHS want to downplay the country’s comparative excellence at limiting the damage caused by the virus?
        Isn’t the purpose of public policy in a pandemic to limit deaths?

      • > Isn’t the purpose of public policy in a pandemic to limit deaths?

        Well, that thinking explains a lot.

        No, the purpose isn’t to limit deaths. It’s to limit spread – which logically will limit deaths but also hospitalizations, serous illnesses, sequelae from getting sick, pressures on front line workers, exhaustion of needed resources such as PPE, etc.

        Cult mentality srikes again!

      • Jeff,
        Which of those two factoids, verifiable record low arctic ice or trusting government ‘managed’ data is logically true? Isn’t that the point of controlling pandemic data, to inform and influence. There is some record breaking science and technology being done like never before in human history so I’m optimistic on on avoiding the worst outcomes.
        As to that ice, well maybe the stadium wave theory hasn’t kicked in yet.

      • Jeff,

        Was that the Didier protocol they followed in France?

        All in all I would prefer something more like Korea. Shut down quickly and forcefully. Get everything under control, drive cases and deaths to almost zero. Open up with plenty of testing and contact tracing to put out any fires that spring up. We haven’t even mastered the testing part after 6 months of spread. Testing is useless if you can’t get results quickly and the mean time for results is days now.

      • “No, the purpose isn’t to limit deaths. It’s to limit spread”

        That’s some industrial strength goal post movement there. The goal of public policy is to “reduce spread” of a virus? Really? Should we shut down the economy for the common cold- after all, who cares that it’s harmless, the only important thing is to reduce spread!

        Of course the goal of public policy in infectious disease is to reduce harm. That was the entire point of lockdowns – at least as explained to us by Brix and Fauci – to flatten the curve.
        And you’re still trying to avoid the corner you’ve painted yourself into. That mortality rate for reported cases means you either must admit that Europe has drastically underreported the number of cases (which kills your narrative that the US uniquely failed at preventing spread) or you must admit that Europe failed utterly at managing the harm caused by the virus (which means the US did a better job of protecting it’s citizens.)

        Jack: “Isn’t that the point of controlling pandemic data, to inform and influence. ”
        By underreporting cases, the EU is “controlling pandemic data” – it could be to misinform, it could be because there isn’t any real public policy need for an accurate case count of asymptomatic cases. Just as the WHO and CDC completely fail, annually, to accurately report every single case of the sniffles.
        By inaccurately portraying the data, activists are “controlling pandemic data” to misinform and influence.

        James: “All in all I would prefer something more like Korea.”
        Well that didn’t happen in either the US or Europe because it was antithetical to either’s political social structure. So let’s analyze performance by comparing nations that couldn’t be Korea. Ooops, the anti-US narrative fails.

      • Jeebus –

        > . The goal of public policy is to “reduce spread” of a virus?

        Yes, it is to reduce (I should have said limit) the spread of a deadly virus that causes a lot of morbidiry and dangerous sequelae. The point being that the goal is more than to simply limit the deaths from the virus.

        > Really?

        If course.

        > Should we shut down the economy for the common cold –

        What?

        > after all, who cares that it’s harmless, the only important thing is to reduce spread!

        The spread of a deadly virus that causes a lot of serous illness. It’s not the common cold.

      • “Jeebus -”

        It’s a highly contagious disease that kills people with identifiable comorbidities, absent a vaccine, the only “limit” you can impose on it is to slow it down and protect those it kills until herd immunity.
        We did that and are continuing to do that.
        The only way you can judge success is by comparing like areas. Based on readily available statistics we know Europe didn’t “prevent the spread” or protect it’s citizens better than the US. New York didn’t prevent the spread or protect its citizens better than Texas. Based on any competent read of their mortality rates either the EU is dramatically under-reporting the extent of the spread (obviously true) or they did a lousy job – compared to the US – of protecting the people it kills (quite possible).
        Since there is no vaccine in Europe, either Nic’s right and the spread was so extensive herd immunity is approaching, or reopening Europe is gonna be just like reopening Arkansas. The Wall Street Journal today reports on reopening-related outbreaks in France, Spain, and Germany. Plus Japan, Australia, Hong Kong…

      • Like every other highly contagious disease herd immunity is the final destination unless an effective vaccine is developed and the track record is not good. Flattening the curve might be justified in some cases. How to get to herd immunity with the least overall damage should be the goal. Fantasies about testing, tracing, and isolation are just that fantasies for those with too much time on their hands. I assume that Josh fits this bill.

        For those who don’t get out much, death is all around us and we accept millions of deaths per year in the US, many of which might be preventable (at least temporarily). Most sane people would have an acceptible level of excess deaths from any cause that would be justified to minimize total harm.

      • At any rate, Jeff,

        Many states have effectively given up trying to limit the spread and certainly your boy ain’t going to do anything at the federal level before November and nostradamus Don (6,000 dead in the US) Monfort guarantees a landslide.

        So it looks like you’re going to get your wish of unrestrained spread of the virus. Certainly preferable than having to wear a mask, right?

      • “The point being that the goal is more than to simply limit the deaths from the virus.”

        # Deaths from virus
        # Spread of virus

        Rank the above assigning the highest goal to one of them.
        You can rank one the highest goal but then cannot say however, or except for.

        The idea is to have a goal and then to try to achieve the goal. Not to have two goals, not tell if you achieved your goal, can’t measure if you did, and have excuses because you don’t have one highest goal, or have it set up so you can always argue neither goal was achieved or you kind of achieved this other goal.

        Swapping between the two goals for your own advantage is B.S.

      • “I guess that would put Sweden on pace for ~900-1100 per million. If the US managed a similar pace we would probably have about 350-400,000 deaths.”
        “Everybody good with that?”

        1 in 1000 with the bias to those over 65. Yes. Yes. Get back to work. Are you Okay with ruining the economy for the next few years?

      • Limiting the spread of the virus reduces deaths and illnesses. They aren’t separate goals.

        Obviously, that needs to be weighed against economic impact.

        Maximizing the economy is not a separate goal either.

        In the non-binary world, those goals live in interaction with each other.

        Which is why questions like this: “Are you Okay with ruining the economy for the next few years?”

        Serve nothing other than a rhetorical function.

        It suggests the simplistic mindset of a cult member. This is not an either/or choice, particularly since there is a huge economic impact from unchecked spread of death and disease at many levels.

      • “Limiting the spread of the virus reduces deaths and illnesses. They aren’t separate goals.”

        That’s just not true. Until vaccine and herd immunity (which can be accomplished with a vaccine) the only limit is speed of the inevitable spread. This is highly contagious and half of the people it infects don’t know they have it.
        Which means limiting the impact of the virus- keeping it away from the aged, sick and obese, improving treatment protocols (which includes not overwhelming hospitals).

        Let’s chat briefly about using testing and contact tracing. Joe has Covid-19, but doesn’t know it because he feels fine. Why would he get a test? If someone talks him into getting a test for giggles, he won’t get the results for a couple days. When it comes back, the trace team knows he was positive for three days, but he may have been positive for weeks or even a month before that. And the team knows for every asymptomatic Joe who gets tested, there are 10 who don’t. Joe’s test result tells you the virus is in town. Unless you’re in the sticks somewhere, you already knew that. Joe’s test result says there are lots of infected people spreading the virus that you won’t identify by tracing. You already knew that because you follow the pandemic.
        If you’re in charge of health, your best bet is to isolate the sick and elderly and prepare the hospital.
        Which you also already knew, and were doing anyway, even before you saw Joe’s test results because that’s how you save lives and saving lives is the point of health care.

      • When you don’t have a highest goal, you’re saying nothing of value. You’re making it up as you go. There is nothing at the heart of you. Reducing deaths is a higher goal than the spread of the virus.

        Attributes of a cult member: Having a goal. Stating that goal. Measuring results against that goal.

        Average person: The virus spread to me. Are you dead? No. But it spread to you. We are doomed. I am fine.

      • RIP Herman ‘9-9-9’ Cain
        RIP Bill Montgomery, co-founder of Turning Points USA
        Both passed away after rejecting warnings to wear masks and practice social distancing but causation is not correlation and both had underlying comorbidity issues so COVID-19 was probably just a catalyst.
        The herd is safe from them now.
        Me? I’m doing just fine just waiting to cast my vote in 2024 since the 2020 election will be rigged per PDJT.

      • Hi Jack,
        More than two people died in the EU this week. Shut it all down, right?

        Anyone else notice that current downward slope of the cases after the uptick doesn’t correlate with the fact that restaurants opened and are still opened. But it sure does match up to attendance curves at the Democratic Party’s June/July mob festivals.

      • Hi Jeff!
        I’ve switched teams. I’m now pro-pandemic since I figured out COVID-19 is carbon negative because every human that succumbs to the coronavirus eliminates hundreds of tons of CO2 and many other toxic effluents in the future.
        Party on dude!

      • Economic goals are secondary to deaths from the virus goals. Two things are of equal value or not of equal value. It’s some math thing that’s important. This is binary. You can’t value one thing higher than the next thing. Par for the course. ask binary questions. Death is binary. If you want to not define a thing, and not know if you met your goal, you’re doing a good job. Here’s a participation trophy.

      • According to the latest statistics one American* human life is worth about $10 million.
        https://www.marketplace.org/2019/03/20/how-value-life/
        “But we do put a value on risks to life — we pay for safety features, we demand more for dangerous work. So the value of a statistical life is technically a measure of the value of risk, and it lets you compare the cost of a regulation in dollars to the benefit in probable lives saved.

        That regulation back in the ’80s about labeling hazardous chemicals — it went ahead. The savings in lives and prevented injuries and lost days at work, all together, were worth the cost to businesses.

        “Every major government regulation that involves mortality risks is assessed using the VSL,” said Viscusi.

        So the value of statistical life is basically a way to value a life without actually valuing life itself.”

        So $10,000,000 x 152,000~deaths = $1,520,000,000,000 or about 1 Jeff Bezos

        *Many Americans are ZEVs.
        Zero Economic Value Citizen: people for whom technology has rendered their skills or jobs without value. There are millions who have already dropped out of the workforce and are ‘ZEV’ citizens.

      • Rookie mistake. Old people are worth less. Less. Old people can be argued to cost us money. Like young people paying into social security to support them. You placed a value on lives. I adjusted it for age. So I am the monster. Safest path. Don’t put a monetary value on a life. But, plantiffs attorneys, who make our lives better.

      • Economic goals are related to deaths. That’s why openers talk of the deaths associated with the economic costs of shelter in place orders. It’s a legitimate point. It’s part of the balance.

        > This is binary.

        In a cultist’s mind, of course. In reality, not. If you focus on limiting illness, you’re necessarily focusing on limiting deaths, and that comes with economic costs and economic benefits. And non-cultists work to reconcile the interaction of the various goals.

        > the Death is binary.

        And that’s a totally different issue. Base two is binary also. Lots o” things are binary. But in the real world, the goals of limiting illness and limiting death are necessarily inter-related.

        > If you want to not define a thing, and not know if you met your goal, you’re doing a good job. Here’s a participation trophy.

        If you want to pretend that theres a binary choice, when the choice isn’t binary, and pretend that you’ve reached a binary (zero sum) victory, you can award yourself a participation trophy. Which is apparently what you’ve done. Congratulations on awarding yourself a pretend award for a pretend victory.

      • > “Limiting the spread of the virus reduces deaths and illnesses. They aren’t separate goals.”

        >> That’s just not true. Until vaccine and herd immunity (which can be accomplished with a vaccine) the only limit is speed of the inevitable spread.

        Ah. Another binary thinker. Imagine my shock.

        A slower spread can lead to significantly less illness and a significantly lower loss of life. We’ve already likely seen a reduction in infection rate mortality becsuee of improved therapeutics and treatment. Thst means fewer deaths. Same for improvements in behaviors that can likely lead to reduction in viral load which likely can mean less severe illness and likely fewer deaths. Same thing for slower spread leading to a less over-taxed Healthcare system. And of course, if a vaccine is developed there could be a very significant differential difference in illness and death.

        And once again, even if you ignore those aspects which we’ve already seen, and the potential benefits of future developments, a slower spread that slows down the rate of illness and deaths would have a differential impact because it would mean many people who have longer before they loose functioning abilities, and longer before the lose their lives. There are direct financial benefits represented from that one gainedz but it’s also of value to the people who get wick and die, and their families.

        For example, it will take years for a country like Finland to reach the same per capita rates of illness and death fro Covid as Sweden has already seen, even if Sweden were to experience, zero illnesses and deaths from Covid starting right now. And they may never even get there! Especially if a vaccine is developed.

        Stop with the binary thinking. It doesn’t serve you well.

        > Let’s chat briefly about using testing and contact tracing. Joe has Covid-19, but doesn’t know it because he feels fine. Why would he get a test? If someone talks him into getting a test for giggles, he won’t get the results for a couple days.

        Jebus.

        Read something about testing and contact tracing and societal supported isolation in a country like Korea. It’s not like it can’t be done. That we’ve miserably failed at it doesn’t mean it can’t be done.

        Again, step back from the binary thinking. Just becsuee we’ve failed at it doesn’t mean that it can’t be done or that it has no benefit.

      • So to sum things up. You can have two goals. That we can’t tell which is the most important. That we can never tell if we met either goal. Here’s your participation trophy.

        If you would, state the goal. If you can’t state your goal, what is your argument? That you can’t state your goal? I can see we are making progress.

        I think it is trouble in placing values on things. A GDP growth rate of 5% is no better than one of 2%. And GDP is not the proper metric anyway. Nothing has any value. Let’s go with that.

        So the binary question is, can you place values on things? And your answer is no. But thing’s are not binary. So you have no answer. So do you or do you not have an answer? You can’t answer that one either.

      • Joshua: “Ah. Another binary thinker. Imagine my shock.”

        You’re incapable of addressing my point- imagine my shock! I wrote that we flattened the curve and slowed the spread (everywhere Cuomo wasn’t governor), so the need is to focus on limiting the impacts of the spread, because spread will happen until a vaccine or herd immunity. We limited spread, time to reopen the economy and minimize the impacts of the virus.
        Public policy focuses on saving lives and protecting (isolating) those who suffer the most from the virus. Meanwhile, cultists focus on the numbers of spread in communities that aren’t harmed and rely on inaccurate EU case counts to make political statements.

        If you were clever, you’d make some sort of claim about infection rates among the younger working age population being a drag on the economy- sick people can’t work, even if it’s only temporary. This was the actual worry and cause of the hoarding in March, April, May. Remember all the scare stories about how outbreaks in packing plants would result in meat shortages?
        But since the statistics don’t back that up- especially after the US successfully flattened the curve and limited both the spread and the impact better than the western world as a whole – you’re reduced to sophistry.

        Hi Jack,
        You didn’t switch teams, it was always population control. Y’all just didn’t get the bug you wanted.
        Write this down: broke governments don’t waste money on windmills. Angela is feeling really good about having that Nordstream 2 pipeline coming online. I’d like to congratulate you on the successful policy implementation – in the nation best known for its “climate chancellor’ – to transition electricity production from zero emissions nuclear over to fossil fuels. Fossil fuels controlled by a heavily armed dictator in Moscow no less! Ain’t the 21st century grand? “Progressives” can succeed in regressive technology and geo-political retreats!

    • The 3,000 more death figure is for a scenario that sees “clusters of new cases around the country which would then quickly subside”.

      Their third scenario, which you don’t mention, is one in which the spread of the virus follows current trends, and just over 200 additional deaths are expected.

      Clusters of new cases are certainly a possibility, but wouldn’t one expect to have seen some of them,and the resulting deaths, already? If you plot rolling 7 day COVID-19 deaths, there are no non-trivial reversals from the downtrend after the mid-April peak, although the trend may be becoming shallower. And (per the FT analysis) by mid-July there were no virtually zero weekly excess deaths over the average.

      • > Clusters of new cases are certainly a possibility, but wouldn’t one expect to have seen some of them,and the resulting deaths, already?

        You think the lack of such clusters is because of herd immunity? Despite that there are parts of the country that have seen few cases, not approaching anywhere near even 10%? Seems unlikely that herd immunity would explain a lack clusters on a country-wide scale.

      • Joshua- how does the virus get from an area where it was prevalent to an area where there were very few cases?
        Since it doesn’t spontaneously appear, the method is travel between Stockholm (for example) and the hinterlands. If herd immunity is limiting the spread in Stockholm, it’s limiting the opportunity to infect travelers.
        The other method, of course, is inter-country travel. In the US, the state of New York, which once sued other states for limiting New Yorkers’ inalienable right to visit at the height of the pandemic, now places limits on the inalienable rights of residents of other states to visit New York. The media says both NY policies were correct, of course.

      • Don Monfort

        Smarmy brainwashed left loon NYC AOC dismal Congressional district dwelling smarmy public school teachers think that capo di tuti Cuomo and his underboss Commie De Blasio have done a good job, way better than Orange Man Bad, of dealing with the virus. Facts, that somehow made their way into the NYslimes;

        https://www.nytimes.com/2020/05/07/us/new-york-city-coronavirus-outbreak.html

        Travel From New York City Seeded Wave of U.S. Outbreaks
        The coronavirus outbreak in New York City became the primary source of infections around the United States, researchers have found.

      • Don. We saw NY and NJ license plates in late March and April in Virginia. New Yorkers fled the city in droves at the very height of the pandemic while lecturing us rubes that THEY were the ones doing they’re part and “sheltering in place”- the laughable phrase that Joshua likes to use.
        That helped this spread.
        But that said, New York’s status as patient zero probably has more to do with it being the center of business and tourism travel and an entry point for foreign visitors. If this country’s scientific, political and media elite ever sober up, there will be a real discussion about whether it ever was possible to “lock down” a city like New York to prevent spread much less ethical to force national bankruptcies of small businesses across the nation out of some misguided sense of solidarity.
        The only public policy that really would have prevented spread was a shutdown of incoming foreign visitors, followed by strictly preventing NYC residents from leaving town, quarantining anyone who had traveled to the city, and then implementing as best you can anything that might slow the spread within NYC – maybe by making them wear the masks they told them not to wear during the worst of the spread.
        And don’t tell me that locking people in the city violates their civil rights- I have family traveling up in NY now and, depending on where you’re from, the state of New York is issuing mandatory orders to report your movements within the state to NY officials, not leave your hotel room for two weeks, and threatening $10,000 fines for non-compliance. It turns out we’re not on the list of prohibited originations, but it was nerve racking since that list was ever shifting and varied depending on which official NY source you looked at. Right up to the day before they crossed the border it wasn’t clear if they needed to report to Comrade Covid. We told them to just tell the virus cops that they planned to loot fifth ave and they’d let them right in with no questions.
        Given the horrific performance of NYC, you can bet that the exodus of infected people in the next pandemic will be three times as bad. The rest of the nation will be 10 times less willing to accept the New Yorkers ignoring the lock down orders.
        But CNN hosts and NYC residents – like Fredo Cuomo – will boast of their adherence to “stay at home” orders. Just not, you know, at THAT home. The other one, the one that’s not in NYC.

      • Don Monfort

        Ain’t it weird that our smarmy little NYC-AOC public school teacher has got the hates on for Sweden, when it’s his own negligent and bumbling state and local regime that has seeded the U.S. with the deadly thing.

        Sweden- deaths 5730, at the rate of 567/1m
        NY- killing fields dead 32,725, at the rate of 1682/1m
        NJ-subsidiary of NY regime dead 15,873, OMG! 1787 per million
        Other nearby states- MASS and CONN competing very closely are tied, each with 1241 dead per million

        I would gladly trade NY and surrounding areas with all the turnstile jumpers, rioters, cop haters, junkies, mindless drive-by varmints and smarmy PS school teachers, for Sweden.

      • Yes Jeff, The media have been doing a good job at their whitewashing of Cuomo and Murphy.

      • I am shocked shocked to discover that people are travelling from state to state in the United States of all places.

        I think we should quarantine all of the hot spots – Florida, Texas, Georgia, Alabama – you know basically the South. Nothing in or out. That includes trains, planes, automobiles, trucks, and bicycles. We probably should closely monitor bird migrations too.

      • James: “I am shocked shocked to discover that people are travelling from state to state in the United States of all places.”

        Define “lockdown.” One that says you can’t go to the corner bar is a restriction on movement and activity. But if that same order says you’re free to dash off to the beach in other states, it is a “lockdown” with with strange caveats that serve only to spread the disease far and wide.

        Then there is the question of equity. New York’s governor objected to any restrictions by other states on travel by New Yorkers during the height of the pandemic, yet now imposes them on travelers from other states. Travelers from 36 states are essentially banned from visiting New York (unless they can stay in a hotel room for 14 days with no contact).

        Which New York policy was wrong in your opinion- the one demanding freedom of interstate travel or the one restricting interstate travel?
        And why would any competent media or “expert” class say (as they do now) “both were right, yay Democrat!”

        https://coronavirus.health.ny.gov/covid-19-travel-advisory

        Any lockdown restricts people’s movement.

        Write that down.

        If you’re going to limit people, do it effectively.

      • If you’re going to issue shelter-in-place orders, do it effectively, and do it early. The longer you wait the more you run into the possibility that the orders will have a diminishing benefit

      • Yo jimmy, the West Coast had the virus first and people from the West Coast travel. But it’s NY that Cuomo Seeded the whole country. Capo di tuti Cuomo and his very dim underboss Commie De Blasio encouraged folks in NY to party on. Don’t be scared, they said. We got this. Get out to the bars, restaurant, massage parlors, basketball courts and needle parks. Go to the Chinese New Year parade to show you ain’t scared and then do some traveling. But you left loon smarmy PS “teachers” give them a pass and blame Trump. Pathetic.

      • Density of population no excuse for Cuomo-De Blasio COVID carnage in NY. New Yorkers would have been better off in the slums of Mumbai. Mumbai population of 12.5 million with 6200 COVID deaths and possibly having now reached a semblance of herd immunity :

        https://www.bloomberg.com/news/articles/2020-07-29/herd-immunity-seems-to-be-developing-in-mumbai-s-poorest-areas

        “With social distancing more or less impossible, Mumbai’s slums are singularly well-suited for the coronavirus’s spread. Dharavi, the largest, packs a population as big as San Francisco’s into an area the size of New York’s Central Park, with as many as 80 people often sharing a public toilet, and families of eight regularly packed in a 100-square-foot room.”

        Just think what a disaster Cuomo-De Blasio could have wreaked, if they were in charge of Mumbai.

        https://www.bbc.com/news/world-asia-india-53576653

        “More than half the residents of slums in three areas in India’s commercial capital, Mumbai, tested positive for antibodies to the coronavirus, a new survey has found.

        Only 16% of people living outside slums in the same areas were found to be exposed to the infection.

        The results are from random testing of some 7,000 people in three densely-packed areas in early July.

        Mumbai has reported more than 110,000 cases and 6,187 deaths as of 28 July.”

      • Doesn’t our little TDS AOC acolyte thread bomber have anything to say about how poorly his Marxist-doofus NYC has handled the thing compared with Mumbai? Fuggetabout hating on Sweden for a while and look to your own mess. You voted for those left loon clowns.

        Mumbai: 12.5 million people,
        6200 deaths

        “With social distancing more or less impossible, Mumbai’s slums are singularly well-suited for the coronavirus’s spread. Dharavi, the largest, packs a population as big as San Francisco’s into an area the size of New York’s Central Park, with as many as 80 people often sharing a public toilet, and families of eight regularly packed in a 100-square-foot room.”

        NYC: 8 million people with gold paved streets and a surfeit of toilets,
        23,000 dead

        Shame on somebody.

      • For Mr. 132:

        Maybe it’s the hydroxycholoroquine.

      • Don –

        You’re really smelling yourself with this brilliant Mumbai to NY comparison aren’t you? I mean I know you’ve got some serious CDS, but you should slow your role or you’ll wind up with egg all over your face like happened to with your 2,500% off 6,000 deaths in US prediction, or when you cry like a wimp and say you’re not going to read any more if my comments 10 or 25 times (before you beg me to punish you by embarrassing you like the little bad boy deserves).

        India as a country has much better results than the US. Around 1/3 the cases as the US and around 1/5 the deaths despite having 5 X the population. So by your logic your boy screwed up big time, but when anyone even suggests that you squeal like a stuck cult member.

        Lots o’ confounding factors with cross-country comparisons, but since you’re so in love with the Indian government, please explain which policies of theirs is it that you think explains why India under Modi has done so much better than the US under Trump? Was it their strict lockdowns? Oh way, that would require you to think outside the cult member box, wouldn’t it? Can’t that, could you? Your fellow cult members might turn on you and accuse you if having TDS.

        Of course Cuomo and Deblasio could have made better decisions. In hindsight we can always say that. But which of their policies were you saying in real time were a mistake, rather than relying on cowardly cheap shots based on hindsight? Go ahead, tell us which locors you criticized in real time? On the other hand, your boy did tons o’ things that people pointed out in real time were going to cost lives. We could start with his lies about testing. If he could have admitted the errors with testing months ago we could have started correcting the problems. But when cult leaders refuse to acknowledge errors and their cult followers fluff their dear leader instead of holding him accountable, he just continues to lie and shirk accountability.

        At any rate – yes they all makes mistakes. Some of those mistakes are understandable but they’re mistakes nonetheless. Deblasio could have shut down sooner just as Trump could have shut down sooner. Cuomo should have made better decisions about the seniors in senior living facilities. But as much as I know you’re cheered by old people dying in New York nursing homes, the fact remains that the % of dead in New York nursing homes is below average compared to other states around the country. That doesn’t excuse his errors. Errors are errors. But consider stopping with the cowardly hindsight cheapshots because they only expose a rabid and partisan cult member – and we know that you’d never be one of those. Lol.

        Anyway, Don, yah, Cuomo and Deblasio made errors that cost lives. Serious people can admit something like that. Only fools lie to themselves to pretend that their cult leaders don’t make errors – when those errors are obvious to see

        Oh, and this whole AOC district public school teacher is just wacky. Do you really think you’re on to something there? ’cause if you do, let’s put some money on it. You’re totally wrong but maybe you’re foolish enough to continue to believe it long enough for me to get some money from you before you lose it investing in loser drugs.

      • BTW – stop mentioning Mumbai on this thread about 10% herd immunity that Nic is so sure of. That 60% infections in the Mumbai slums makes Nic’s confidence a bit problematic. Wouldn’t want that to happen, now would we?

      • BTW, Don –

        I loved how you tried to handwave away your 2,500% off prediction about deaths in the US by saying it was because you’re “optimistic.”. That was beautiful.

        It wasn’t because you were taking out your a$$ on a topic you know nothing about. Yah. That couldn’t be it.
        It was because you were “optimistic.”

        Too funny.

        Don’t ever exchange, Don. We love you just the way you are.

        Oh, and I certainly hope that “bye” wasn’t another lame promise to stop reading my comments. I can’t tell you how upset the very thought makes me!

      • “The coronavirus outbreak in New York City became the primary source of infections around the United States, researchers have found.”

        Not Stockholm, not Stockton, not Mumbai, not Managua but left loon Marxist-doofus NYC. Who is going to pay for that? Trump?

        They can’t eve think of names for schools. PS # whatever. No wonder their school system is a total failure. Who is going to pay for that? Trump?

      • They tried to push their salsa on us and we wouldn’t buy it:

      • Judith will probably delete most of this but somebody needs to deal with these smarmy thread hijackers.

    • I’ve been thinking about how people are making assumptions about the impact of Sweden’s policies choices, by backwards engineering from outcomes like deaths and change in rate of deaths and changes in rate of identified infections, etc.. That could be a facile way to look at it.

      Cases per capita in Sweden are at 7,868 and cases per capita in Spain are at 7,008.

      Sweden has conducted significantly fewer tests per capita, @80,000 per million as opposed to @140,000 per million in Spain

      So Sweden has done considerably less testing per capita and identified somewhat more cases per capita. That would be consistent with a faster spread as a result of governmental policy.

      But perhaps Sweden has done a more targeted testing – so maybe their positivity rate is higher. And so the ratio of tests conducted to cases identified may not tell the whole story.

      I’m thinking that the differential impact of Sweden’s policy approach compared to Spain’s may not really be as different as one might expect with respect to speed at which the countries are approaching the putative HIT.

      Perhaps I’m biased.

      But if there really were a huge impact from government policy, I would expect the cases per capita to be more dramatically different.

      Of course, it’s really precarious to compare across countries, with so many important variables that need to be accounted for to make any meaningful conclusions. That would be true for evaluating the effect of heterogeneity in each country, respectively, as well as the effects as measured by deaths per capita.

      And perhaps the more “intrinsic” aspects of the comparative situations is more explanatory than government practices, per se.

      Just sayin’.

      • Thinking about it, a much more more instructive comparison would be Sweden to its Nordic neighbors.

        Hmmmm.

        Norway, tests per capita = @79,000 = similar to sweden
        Cases per capita = 1,687…less than 1/4 Sweden….)

        Denmark @ 257,000 and 2,353
        Finland @62,000 and 1,338

        Maybe the numbers really do show that the trajectory of the pandemic is a direct function of the policies…. which is weird because from what I’ve seen the behavioral manifestations of the policy differences in the Nordic countries are not thst different (i.e., similar drops in mobility)

      • Curious George

        You are guessing final scores at half-time.

      • George –

        Fair point. Although I would say beginning of first quarter.

      • jungletrunks

        “Although I would say beginning of first quarter.”

        Why play your game?

        I’ll go with the 5th inning, though the game may drag on as the Left continues hitting foul balls from wild, sloppy swings. The best they can do are dying quails, it appears.

        While a few COVID walks were apparent in January, the Lefts game didn’t get frantically serious until around March, when they put their best spitball pitcher on the stinking NY mound. Let’s remember the foul racist cries towards the red team for keeping Chinese players in the dugout in January; and of course NY officials were advising fanboys to hit hot dog concessions with abandon until much later (broadcasters were widely announcing there was nothing to worry about early in the game).

        Maybe we’re at the bottom of the 6th? It’s hard to maintain attention watching a sloppy game. The ump is checking the scoreboard, it appears there’s some funny business going on with the count.

        The home team medic, Fauci, has a fairly high degree of confidence the game will end sooner rather than later, “cautiously optimistic”, in his own words; that we’ll have a good shot for finishing the game by years end. This seems reasonable if we can keep him off the mound.

        A promising shot in the arm performer just moved into phase 3, aka Triple A. The red team has a good farm system; 10 possible winners in the pipeline, 2 more moving up to Triple A soon. The blue team would prefer to hold their farm system back till next year in hopes they can get a better draft pic; they’re satisfied with paying off umps and stinking up the place till then.

    • Jack –

      What’s your source for that graph? Also, aren’t the hospital reports and other still available to Johns Hopkins and other consolidators of data? By what mechanism could the HHS actually alter the data? Also, well have to see if there’s a discrepancy in data on hospitalizations and deaths which might be harder for HHS to control.

      Correlation doesn’t equal causation.

  31. Matthew R Marler

    positivity rates for Latinos in the JHU catchment area:
    https://jamanetwork.com/journals/jama/fullarticle/2767632?guestAccessKey=021db7f7-cf8b-4cd3-984e-03a426f75c50&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=etoc&utm_term=072820

    sample: The daily positivity rate was higher for Latino patients than patients in the other racial/ethnic groups (P < .001 for each pairwise comparison; Figure, A). Moving average trends in positivity rate peaked later for Latino patients at 53.4% (95% CI, 49.6%-57.3%) on May 10, 2020, compared with white patients (16.1% [95% CI, 14.1%-18.3%]) on April 16, 2020, and black patients (29.6% [95% CI, 26.9%-32.6%]) on April 19, 2020. As testing volume increased over time for all racial/ethnic groups (Figure, B, C, D, and E), positivity rates declined (Figure, A).

  32. school closures and COVID-19:
    https://jamanetwork.com/journals/jama/fullarticle/2769034?guestAccessKey=bcaed1ea-2f56-41a8-a4e7-b9e526931aa6&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=olf&utm_term=072920

    snippet: In this US population–based time series analysis conducted between March 9, 2020, and May 7, 2020, school closure was associated with a significant decline in both incidence of COVID-19 (adjusted relative change per week, −62%) and mortality (adjusted relative change per week, −58%). In a model derived from this analysis, it was estimated that closing schools when the cumulative incidence of COVID-19 was in the lowest quartile compared with the highest quartile was associated with 128.7 fewer cases per 100 000 population over 26 days and with 1.5 fewer deaths per 100 000 population over 16 days.

    Closure is confounded with other state differences. Not as well done as the German study of lockdown orders, imo.

    • The countries most similar to Sweden – arguably Norway, Finland, and Denmark. I would be interested in reading someone knowledgeable about Scandanavia describe how alimentary are and whether other countries might be more like Sweden.

      At any rate, looks like Denmark has a slight trend of increasing cases which could turn into a spoke but we’ll have to see. It may not.

      Outside of that, the three other countries have still lower rates of infection than Sweden, and even with Sweden currently at a 7 day average down to 2 deaths its certainly no better than in those other countries.

      Has Sweden experienced a less severe economic impact than those other countries. Doesn’t seem clear as of yet – although maybe to some degee.

      Will it benefit differentially economically going forward compared to those other countries? I guess we’ll have to wait and see. Anecdotal reports seem to suggest thst people are social distancing at this pint to similar extents among those countries (if anyone has information on that, please provide a link).

      Will it prove that Sweden’s massive sacrifice in deaths and illness are worth it in the end? That’s largely a subjective determination, but even then it’s too early to say, and even thefe the long term answer to that question will be a function of the development of therapeutics and a vaccine. Too early to say.

      Beginning of first quarter.

      • Actually, “massive” is completely subjective as well.

        But the fact remains that even if all infections and deaths from Covid stopped today, it would take those other countries years at their current rates to reach Sweden in absolute numbers of illness and deaths. Of course, rates in those other countries could increase and it could happen sooner. And of course, if a vaccine is developed, it would probably never happen.

        Ultimately up to the people of Sweden to decide.

        Extrapolating to other more dissimilar countries is obviously problematic (even though many want to ignore those problems), but I think it’s fair to say that the sacrifice for other countries if they had followed a similar trajectory – which keep in mind would be an unrealistically best case scenario because if Sweden’s structural advantages – would have been “massive” even if people want to judge it as worthwhile.

      • “Actually, “massive” is completely subjective as well.”

        Yes. In that connection, I suggest that it is much more appropriate to measure the cost of COVID-19 deaths In terms of loss of quality-adjusted life years (QALY), a standard measure used to appraise the benefits of public health interventions, than in terms of crude total deaths. On that basis, the burden of COVID-19 deaths in Sweden appears to be almost identical to that of (largely respiratory disease caused) excess mortality in England (I can’t find suitable data for Sweden) during the 2017-18 flu season, measuring both as rates per million QALY expected for the whole population. That is because the average age of people dying from COVID-19 in Sweden is so high.

      • Nic –

        > In that connection, I suggest that it is much more appropriate to measure the cost of COVID-19 deaths In terms of loss of quality-adjusted life years (QALY), a standard measure used to appraise the benefits of public health interventions, than in terms of crude total deaths.

        That is hardly an objective measure. All kinds of subjective values embedded if you take a generic measurement of averaged years of expected life left to attach a value to one death versus another. Not to mention that there are all kinds of complicated compounds that would necessarily need to be taken into account – such as baseline health status, health behaviors, # of comorbities, predicted like race/ethnicity and SES. Not to say that the evaluation is irrelevant or shouldn’t be examined, but neither should the sticky social and values implications of those factors be ignored. For example, is a 70 year-old black man who supports two generations of children and grandchildren, and who has a comordibity, worth less than a 70 year old white woman who is healthy as a horse but suffers from schizophrenia and is institutionalized – even though her life expectancy might be much longer? Or flip the script, and figure out if a 70 year old man who runs marathons and eats a very healthy diet and has no comorbidities and lives in a life care community and lives in Sweden is worth less or more than a 40 year old man who has many comorbities and who never exercises and eats a poor diet and lives alone in Harlem and is not likely to get covid. You need very granular data to make those assessments meaningful. Data that we don’t have. Yes, you can do averaging, but there are a lot of moral Implications that you just can’t wave away. Answer them as you will. Different people will being different values to the discussion. But don’t just ignore them.

        Here’s a discussion where statistically literate people (excluding my comments) weigh-in:

        https://statmodeling.stat.columbia.edu/2020/05/13/years-of-life-lost-due-to-coronavirus/

      • And again – straight country to country comparisons could be very misleading if you don’t control for important country-specific variables – not to mention that you should be considering % of change in mortality rate in the one country compared to the other, and not a simple comparison of absolute numbers adjusted for the population.

      • It is blatantly obvious that what Nic said is correct:

        “Yes. In that connection, I suggest that it is much more appropriate to measure the cost of COVID-19 deaths In terms of loss of quality-adjusted life years (QALY), a standard measure used to appraise the benefits of public health interventions, than in terms of crude total deaths.”

        Arguing against this with elaborate jabbering prominently featuring the race card is just foolishness and futile.

        QALY more appropriate measure than crude total deaths. Period. End of story. No need for all that useless self-agrandizing jabbering. Oh, look at what I said where statistically literate people gather. Putz.

      • Don –

        > QALY more appropriate measure than crude total deaths

        Thanks for reinforcing my comment I just wrote about sense of entitlement.

        So nice of you to determine what is and isn’t the more “appropriate measure.” If only you could get the riffraff to fall in line eh? Those ignorant rubes insist on thinking that total deaths is the “appropriate measure” and keep using it! And imagine, they haven’t even asked you to decide for them as they should!

        One would think that with your prognostication skills you put in display with your prediction of 6,000 deaths in the US from Covid, they would have learned to fall in line.

        (and again, I love that you explained your 2,500% error as being a result of “optimism” rather than just you pulling something out your a$$ on a topic you know nothing about).

        Oh well, such is the hardship of being the superior. I feel for you.

      • Don –

        Here you go. Maybe you can take a few minutes out from hating and writing “left loon” long enough to read an article about Dharavi in Mumbai – in the WAPO, .. Shriek!! (I promise you won’t get the cooties if you read it).

        https://www.washingtonpost.com/world/asia_pacific/how-a-packed-slum-in-mumbai-beat-back-the-coronavirus-as-indias-cases-continue-to-soar/2020/07/30/da859532-d039-11ea-826b-cc394d824e35_story.html?

        And since you were praising the outcomes there, and wishing we had done as well here, maybe you can join me and agree that its a tragedy that our governments at federal and state levels didn’t take as aggressive an approach as they took in Dharavi.

        Fortunately, it’s not too late for governors and you boy in the White House to learn from others – although in the case of your boy I put the chance of that happening somewhere between 0.001% and 0.002%.

        Of course, I never thought that anyone could be as far off as 2,500% in predicting American deaths from Covid either – and you proved me wrong there!

      • Joshua, As usual, your article contains little beyond anecdotes. I thought I read recently that in some areas of Mumbai up to 2/3 had already been infected. It that’s true, the cause of declining cases could be herd immunity. India has a much younger population than most Western countries, so IFR’s would be a lot lower too. In any case, “cases” is a virtually meaningless measure.

      • pathetic

      • Since our resident left loon joker wants to talk about left loons, this is one he voted for. AOC’s Congressional district in NYC is definitely in the running for worst per capita corona virus death rate in the universe. But she is busy curing white supremacy:

        https://twitter.com/johnrobertgage/status/1289216440088662016

        So, the Democrat left loons won’t even give a Saint a break. Saint Damian was white, so he’s a white supremacist. Never mind that he went among native Hawaiian lepers turned out by their own people and cared for them at the inevitable cost of his own life from the terrible illness.

  33. Nic Lewis, thank you for the essay.

    About this assertion: herd immunity to COVID-19 is reached much earlier than thought

    Can you support such a claim for any other country than Sweden? How would you be able to tell, for example, when herd immunity “is reached” in New York or Texas?

    Has anybody taken one of these models and fit it to the data of a number of countries through June (separately for each country) and used the fitted models to (a) project the rest of the year; (b) test between-country differences in parameter fits (distinct from “explaining” any differences); or (c) tested whether parameter(s) changed on the date(s) of any lockdown(s) (i.e. a changepoint analysis)?

  34. jungletrunks

    Herman Cain passed away today from COVID-19.

    Cain should be honored alongside John Lewis as a 20th-21st century role model; these individuals distinguished the essence of what hard work, determination and perseverance could accomplish, irrespective of ones race, or creed. Both advanced from being disadvantaged within a racially charged society. John Lewis and others advanced civil rights; Cain demonstrated the fundamental power of the individual to advance through poverty to become a leader through perseverance. Both these figures capture a unique, but fundamental achievement that embraced inherent American founding principles granted through the Constitution and Bill of Rights.

  35. Above dpy6629 | July 29, 2020 at 8:15 pm | repeated a common, but grossly wrong statement: “Like every other highly contagious disease herd immunity is the final destination unless an effective vaccine is developed and the track record is not good. Flattening the curve might be justified in some cases. How to get to herd immunity with the least overall damage should be the goal. Fantasies about testing, tracing, and isolation are just that fantasies for those with too much time on their hands.”

    Nonsense! Taiwan, South Korea, New Zealand, Australia, China and now Germany are currently PROOF BY COUNTER-EXAMPLE that herd immunity isn’t required to be the final destination of a highly contagious disease in the absence of a vaccine. Clearly testing, tracing and isolation can be effective.

    The 1918 pandemic occurred in several waves often six months apart. That pandemic was stopped by fear and public health policy several times well short of herd immunity. By 1920, an estimated 33% of Americans had contracted the disease, but that is well short of traditional estimates of herd immunity. And the same strain of flu was present in seasonal influenza for decades afterwards – proving that herd immunity hadn’t been reached even in 1920. As a population approaches herd immunity, the exponential growth rate isn’t as explosive because a significant number of the contacts an infected person has are with those who are already immune. Those with the greatest number of contacts were more likely to be immune. Being partway to herd immunity means outbreaks spread more slowly and were easier to contain by fear and public policy.

    Didn’t polio pandemics (with an estimate R_0 of 5-7 according to Wikipedia) end well short of herd immunity? FEAR is a great motivator to change behavior.

    • I’d caution against using Australia, as an example for your point, just now. The virus is well out and about in Melbourne and Victoria, with leaks into Sydney that may also be getting away (this makes up about half the population), and now cases in Queensland (starting with a couple of very dodgy characters, perhaps criminals, who lied to the authorities about having recently been in Melbourne). It’s a costly and ultimately grotesque game of whack-a-mole. At least in part, this second wave follows a security guard getting between the sheets with someone who was supposedly in mandatory supervised hotel quarantine (after entering the country).

      The question to my mind is just how bad is this virus? Is it something we need to eradicate (like smallpox), or learn to live with. Given the difficulty of the former, I’m surprised to find it becoming heretical to muse on the latter.

    • Well, I’m assuming that polio is a special case in that those infected were mostly incapacitated. I don’t think however that there were any special public health measures implemented against polio, which was never very commonb. That leads me to believe the R can’t have been as high as you say or else most people had natural immunity.

      In any case, testing, tracing and isolation in a free society are very difficult to maintain. And discipline and will always erode over time. So, its a solution that seems attractive to some with a certain perfectionistic or even authoritarian viewpoint, but it has never worked very well in the USA for other diseases.

      Given the highly skewed profile of those who have died, and the smaller than initially thought IFR (which always decreases as an epidemic progresses), I would tend to believe that taking into account preexisting immunity we may be close to herd immunity in many places already. Life is dangerous and short of Howard Hughes levels of obsession and compulsion, I don’t consider it possible really to “stop this virus” at least in the US.

      A question for you Frank. What level of excess mortality are you willing to accept from covid19 to avoid massive economic damage and large resultant future mortality?

      • “to avoid massive economic damage and large resultant future mortality?”

        Which is similarly a myth. You cannot fight a myth with a myth. People losing money isn’t an economy. An economy is one that delivers needed goods and services to people, and the current economy is doing just that. What we are discovering is how much of the economy is actually needless fluff.

        The “economic damage” doesn’t happen if you operate the economy properly – essentially ensure everybody short of a job has a job at a living wage paid Federally where the job is currently to keep out of the way.

        That will auto-stabilise the system for as long as we want it to.

        The issue is about individual freedom, not counting dollars. There are as many dollars as required to operate whatever production system we want to operate.

      • “People losing money isn’t an economy”

        I meant people losing money isn’t economic damage.

      • NielW, Your comment is deeply inhumane. The excess mortality resulting from chronic unemployment is very well documented. Wealth is associated with longer life expectancy and more creative energy. This has been true throughout human history.

        The 30 million who are currently unemployed in the US thanks to our mass panic attack over covid19 are important too. Their lives matter.

        Your socialist nostrums have been a disaster where ever they have been tried. Free enterprise produces vastly more happiness and wealth.

        Finally, your attitude is deeply dictatorial. People should decide for themselves what is “necessary” and what is “fluff.” That you, an anonymous leftist on the internet thinks he knows this with certainty is a sign of a personality problem. The other alternative is that you are an unemployed Bernie Bro sitting in Mommy’s basement with nothing else to do.

      • Bernie bro (probably PS #whatever teacher) says:

        “The “economic damage” doesn’t happen if you operate the economy properly – essentially ensure everybody short of a job has a job at a living wage paid Federally where the job is currently to keep out of the way.

        That will auto-stabilise the system for as long as we want it to.”

        Why can’t we do what all the other countries are doing? Government operates the economy and auto-stabilizes stuff for as long as we want stuff to be stabilized. Properly. Modern Monetary Theory. AOC Utopian Econ 101: for Dummies.

        If these loons succeed in getting power, we are sunk.

      • dpy6629: I won’t be allowed my choice of “tolerable excess mortality”. No democratic or authoritarian leader of a nation or locality with a reasonably advanced health care system is going to fail to take action to prevent citizens from dying waiting in line to get into a hospital or lying in hallways waiting for a bed! Given the absolute inevitability (IMO) of government action, I want government action that will bring the pandemic to a halt – not have it drag on indefinitely. Simply “flattening the peak” is a recipe for a multi-year depression and slow recovery. Many people won’t leave home unless they feel safe! The Swedes didn’t force businesses to close, but they suffered economic damages similar to their neighbors that did. And for some reason (population density? hygiene, less crowding in public places?), the cumulative number of cases was doubling in Sweden every five days in March, instead of the normal 2.5 days seen in most other countries, explaining why Swedish epidemiologists weren’t under immediate pressure to stop the exponential phase of their pandemic. Nevertheless, they have publicly acknowledged making the wrong call and apologized. The Swedes look at their neighbors and wish they had reduced their case load dramatically and were now returning to normal!

        The difference between stabilizing (each infected person infecting an average of 1.0 new person) and winning (each infected person infecting an average of 0.8 or less new people) is darn small! With an incubation period between successive infections of about a week, in 10 weeks the case load can be reduced to 0.8^10 = 11% = 10-fold safer. 0.7^10 = 3%. The Chinese reached 0.3 and the Wuhan pandemic was totally stamped out by April 1. With an order of magnitude or more fewer patients, testing, contact tracing, and quarantine are more practical. (Offer anyone who has been exposed quarantine with free room in empty college dorms and hotel rooms with delivered meals. With adequate testing, quarantine can be shortened to one week followed by a test.)

        Then you begin returning people to work, remembering that more contacts between people MUST be accompanied by safer contacts between people: Mandatory face masks, forehead temperature scans on entering schools, workplaces and public buildings, PCR assay data in less than 8 hours (instead of more than 2 days), hospital grade air filters in all public facilities – anything AND everything that MIGHT help, so that as many people can return to work as possible and still keep the new infection rate falling. 10 more weeks at 0.8 – 1% as many new cases a day = 100-fold safer.

        Eventually, your pandemic will be reduced to localized outbreaks that can be stamped out with severe LOCAL measures and local universal testing.

        In the hardest hit areas of our country, there are up to 100 new cases/day/100,000 people. If a person is infectious for an average of 10 days, 1% of the population is known to be infectious at any time, several times that many actually are infectious, and the case load is intolerably close to overrunning hospitals. Elsewhere, about 0.1% of the population is known to be infectious, a non-trivial cumulative risk for people who have potentially infectious contacts with a dozen people a day. So far, we have had about 4.5 million confirmed infections, 1.5% of the population. No matter what factor you favor for compensating for silent infections and calculating herd immunity, our pandemic and linked economic woes ARE GOING TO CONTINUE FOR MANY MONTHS TO COME, including re-opening schools and colleges this fall. As I noted elsewhere, the 1918-20 Spanish flu arrived in three waves, so the near halts in that pandemic were NOT caused by approaching herd immunity. If I’m correct about herd immunity, a “flattening the peak” strategy will mean several YEARS of the current mess.

        I read, but lost track of, one paper that tried to identify the optimum (economic) strategy for dealing with an influenza pandemic. The authors concluded that the decision whether or not to intervene depended on the value assigned to jobs and to lives. However, the best strategy if intervention was chosen was the one that ended the pandemic as quickly as possible. Merely flattening the peak was expected to produce the worst economic outcome.

        Thus I get extremely frustrated when usually-intelligent commenters fail to recognize that other countries are winning the fight against this pandemic, proving that we can too. Since intervention is a political necessity when a threat of overrunning hospitals exists, our only good choice is winning. The philosophical issues you pose above should yield in the face of reality.

      • Frank, that’s a pretty long winded response. I just don’t believe that the strategies you advocate can work in the real world as they have not worked with past epidemics unless the contagiousness was lower. One can look at California where they have had a very strict lockdown that essentially continues to this day. Yet cases are growing. Now its true that California has a large population of very poor people who don’t speak English and may not be aware of Newsom’s orders. Perhaps compliance in this population is low. Or perhaps young people who are already ready to tear down the system don’t care. Perhaps German’s are more inclined to “comply” with their elites than Americans. Most experts who I have read seem to believe that more waves are likely in places like Germany. The fundamental problem is human nature.

        Whatever the case, those states with the most stringent measures also seem to have had the most deaths per capita. And hospitals were never even close to being overwhelmed except possible in NYC. Speaking of this is really scare mongering. Just as the “ventilator crisis” was largely not justified.

        The only case in which your ideal world strategy is worthwhile is if a vaccine that is effective shows up soon. The track record is not very good. But the economic damage is profound. I fully expect the financial system to approach collapse when mass defaults and bankruptcies start happening. The only alternative may be a massive devaluation of currencies which in the past have been ruinous. A whole class of people who have accumulated some moderate wealth will be ruined, many of them retirees.

        The insanity of this can be seen by asking yourself if you want to lower speed limits to 10 MPH to save 45,000 lives a year. No sane person advocates this approach because public policy is always a balance between lives saved and convenience and freedom. If everyone had followed public health advice, we could have wiped out AIDS very early on. That didn’t happen and will never happen.

      • > Whatever the case, those states with the most stringent measures also seem to have had the most deaths per capita

        I think you may actually not understand the concept of direction of cauality.

        Remarkable.

      • Count on Josh to be unable to understand a true and well formulated sentence.

      • Frank: “Eventually, your pandemic will be reduced to localized outbreaks that can be stamped out with severe LOCAL measures and local universal testing.”

        Where will the localized outbreaks be? Based on current situations, everywhere. Where will the “severe local measures” need to be implemented? Everywhere. Unless you implement severe travel restrictions- like NY, NJ, CT, Washington DC. And if you don’t put political exceptions on your “severe” measures, like DC just did (they mandated a 14-day quarantine for any DC resident traveling to Georgia, then immediately said it didn’t apply to any DC resident who traveled to Georgia Rep. John Lewis. )
        Stay at home, unless you want to join the left’s nightly street festivals.
        Wear a mask, except in April when the pandemic was peaking.
        Abide by the travel restrictions, unless they’re inconvenient to mayor.
        Don’t go to a restaurant, unless you want to burn or loot it.
        Do not hold funerals, unless politicians want to.
        Read how New York “controlled” the virus and Texas didn’t, unless you count the dead.
        And be advised European countries “stopped” the virus, unless you include the growing numbers of outbreaks.

      • dppy6629 wrote: “I just don’t BELIEVE that the strategies you advocate can work in the real world as they have not worked with past epidemics unless the contagiousness was lower.”

        Respectfully, I think you are suffering from confirmation bias. The only evidence you can remember is evidence that agrees with your preconceptions. The fundamentals of a pandemic are simple:

        1) Coronavirus is transmitted from person-to-person by close contact usually indoors. Reduce the number of contracts and you WILL reduce the average number of new people being infected by each currently infected person. Right?

        2) The likelihood of transmission during any contact CAN be made safer by: required quarantine of anyone testing positive, recommending and providing free quarantine and automatic testing to those identified by contact tracers to have been in contact with those who have tested positive, getting testing data to contact tracers within a maximum of 8 hours rather than 2 or more days, requiring face mask or shields, forehead temperature scans to enter schools, workplaces and other public buildings, better air filters and ventilation, hand sanitizer outside every public entrance door, etc. Right?

        3) The number of contacts and the safety of contacts determines the future course of the pandemic. Right?

        The evidence from European countries and China is overwhelming that effective measures COULD HAVE reduced our new case load by 10-100 fold. Some Asia countries have demonstrated from the beginning of this pandemic that effective measure can contain initial outbreaks. Right?

        dpy6629: “One can look at California where they have had a very strict lockdown that essentially continues to this day. Yet cases are growing.”

        Total nonsense. On July 14, the BBC reported:

        “California has REIMPOSED restrictions on businesses and public spaces amid a spike of coronavirus infections in America’s most populous state.
        Governor Gavin Newsom on Monday ordered an immediate halt to all indoor activities at restaurants, bars, entertainment venues, zoos and museums. In the worst-affected counties of the south-western US state, churches, gyms and hairdressers will also close.”

        https://www.bbc.com/news/world-us-canada-53399080

        California had lifted almost ALL of their restrictions, even on high risk activities such as bars, gyms and indoor dining. Many states began cautious re-opening of sites where contacts were least dangerous in May or early June, but since then – encouraged by the White House – many have abandoned all caution. Even states with Democrat governors were pressured to follow. (At the end of May, I speculated about a worst case scenario of cases doubling every five days, but haven’t done the analysis on the current surge.)

        dpy6629 wrote: “And hospitals were never even close to being overwhelmed except possible in NYC. Speaking of this is really scare mongering. Just as the “ventilator crisis” was largely not justified.”

        More confirmation bias. Have you forgotten watching the lines of patients waiting to get into NYC hospital emergency rooms at the end of March? NY and other large states began imposing lock downs on March 19 and 20. The earliest time these measures could have influenced the rate of new hospital admissions would have been one to two weeks later. New cases were doubling every 2.5 days in the US in March. There is absolutely no doubt that those restrictions kept NYC area hospitals and probably others from being overrun in April. An exponential increase in new cases will inevitably overrun fixed resources like hospital beds (and professional staff whose numbers have been limited to lower costs). The only thing that can stop it are changing behavior (motivated by fear), public policy, and rising numbers of immune survivors (too slow to have an impact so far by traditional measures. The US went from cases doubling every 2.5 days in March to slightly falling new cases by mid-April because of the restrictions imposed beginning on March 19.

        In the past month, haven’t you read the stories about hospital capacity in Florida, Texas, Arizona and New Mexico? This is why these states started restrictions again. This shows again why politics, not economics, is going to prevent us from reaching herd immunity as fast as you would like even in red states. The hardest hit areas today have about 100 new cases/day per 100,000 people – about 1000 days infect everyone before correcting for silent infections and percentage needed to reach herd immunity. In other words, even the hardest hit areas that are worried about hospital capacity are still approaching herd immunity at a painfully slow rate. The Spanish flu arrived in multiple waves over three years (and may never have reached herd immunity) for exactly the same reason.

        The ventilator crisis was real until doctors learned that patients with low oxygen levels in their blood could be better managed by having them lie on their stomach rather than by using a ventilator. This has allowed doctors to postpone the drastic step of intubation and greatly reduced the DEMAND for ventilators – which otherwise would have been in short supply.

        https://www.jwatch.org/na51855/2020/07/07/prone-positioning-can-help-oxygenation-nonintubated

        dpy6629 wrote: “The only case in which your ideal world strategy is worthwhile is if a vaccine that is effective shows up soon. The track record is not very good. But the economic damage is profound.”

        I explained why dramatically reducing the number of ill Americans as fast as possible was and remains the strategy that will MINIMIZE economic damage.

        dpy6629 writes: “The insanity of this can be seen by asking yourself if you want to lower speed limits to 10 MPH to save 45,000 lives a year. No sane person advocates this approach because public policy is always a balance between lives saved and convenience and freedom.”

        And when there is a severe blizzard, we lower the speed limit to 10 mph or even close the roads – for as long as it takes to restore to safety. Some roads in the mountains close for the winter. When this pandemic threatens to exceed the capacity of hospitals, the situation is somewhat analogous to local authorities banning driving BEFORE the worst of a blizzard arrives so the roads aren’t packed with accidents and abandoned cars. The economic cost of letting a big mess develop is much higher than the cost of preventative measures and people can return to normal sooner. Returning to normal is what both you and I want.

      • jeffnsails850 asks: Will the localized outbreaks be? Based on current situations, everywhere. Where will the “severe local measures” need to be implemented? Everywhere. Unless you implement severe travel restrictions- like NY, NJ, CT, Washington DC.

        South Korea reported only 30 new cases of coronavirus yesterday and have never forced businesses to shut down. In less than 24 hours after blood samples are taken, everyone an infected person reported being in contact with is notified. Information from the sick person’s credit card transactions has been used to automatically notify everyone who made credit transactions at the same place and time. South Korea never closed their borders to China or the US, but they certainly have installed an app on every visitor’s cell phone to ensure they obey the quarantine rules and can track everywhere they have gone. Nothing is stopping the US from doing the same, but state and local governments don’t have the money to implement new programs. My county recently added 40 contact tracers, but is still looking to add 150 more (4 months after the need was obvious).

        jeffnsails850 wrote: Read how New York “controlled” the virus and Texas didn’t, unless you count the dead.

        Insanity! The fraction of people killed per confirmed infection depends on the age of people getting infected. Today vulnerable people all around the country are scared and taking appropriate precautions, but the recent surge has made necessary contacts twice as risky for vulnerable people as in late April, May and early June and 10-fold more risky in Florida. Back in late March when the pandemic was exploding in NYC and nearby areas on the East Coast (because of flights from Europe), the vulnerable weren’t even being advised to wear face masks. Nursing homes weren’t prepare either, especially because infected staff that could be asymptomatic. Treatment and nursing homes have improved. So naturally the death toll in NY was higher in April than in Texas and Florida today (where the hospitals are surprised how many younger people are being admitted).

        The most fundamental measure of how effectively various states controlled the pandemic is the change in the number of new cases and deaths AFTER nature of the problem was apparent and control measures had chance to take effect: 4/1 for new infections and 4/15 for deaths. In NY, there were about 7600 new cases/day on 4/1, 10,000 new case (1,000 dying, 10%) at the peak about 4/10 (7 day averaging), less than 1,000 by early June and about 700 today (with about 15 dying, 2%). Today, NY is administering 3.3 tests per 1000 people with a 1% positive rate. Texas, on the other hand “started” dealing with only 500 new cases/day on 4/1, reached 1000 (with 30 dying, 3%) in early April, gradually rose to 1,500 in May and June, and now has spiked above 10,000 in mid-July (with 250 dying, 2.5%). Today, Texas is administering only 2.2 tests/1000 people with a 12.4% positive rate. (Texas has about 50% more people than NY). If NY “controlled” its pandemic as poorly as TX, there would be about 100,000 new cases a day in NY, and almost 10,000 deaths/day! The main reason why so many died in NY is that the initial outbreak was hitting the most vulnerable in NY very hard, especially nursing homes. Today the death rate in NY per infection has improved by a factor of 5, and is slightly lower than in TX (which has shown modest improvement.

        jeffnsails850 wrote: And be advised European countries “stopped” the virus, unless you include the growing numbers of outbreaks.

        No country or state has permanently stopped the pandemic until herd immunity has been achieved – almost certainly by vaccination. There will be a war against coronavirus until then, but unfortunately no one has told Americans they ARE at war. That is why there are doubts about schools and colleges re-opening this fall and individuals returning to their normal workplaces. We didn’t win this war in the spring like many other nations and we are currently losing. China, Taiwan and South Korea have proven the coronavirus can be controlled for many months without punitive restrictions. New cases are spiking in Spain, but have not reached the levels seen in April, much less double April (as in the US). Cases are not spiking in Italy, Germany or UK, but they remain vulnerable to new spikes because they haven’t improved in since mid-June. If each infected person were infecting only 0.8 new people, new cases would be dropping about 50% per month. IMO, since they are no longer winning, they are vulnerable to a second wave, but at least that second wave will start at least 10-fold below April highs.

      • Frank –

        +1

      • dpy6629: I wrote an earlier reply that seems to have disappeared.

        dpy6629 wrote: “One can look at California where they have had a very strict lockdown that essentially continues to this day.”

        Nonsense. California had lifted most of their restrictions by early June, including risky activities such as indoor gyms, dining and bars.

        https://www.bbc.com/news/world-us-canada-53399080

        dpy6629: “Most experts who I have read seem to believe that more waves are likely in places like Germany. The fundamental problem is human nature.”

        Spain has suffered a large rebound, but nothing like the US. Germany, Italy and UK haven’t seen any rebound. South Korea and China have snuffed out significant new outbreaks. China responded to a new outbreak in Wuhan testing most of the city (10 million tests) in 19 days and found 300 asymptomatic patients. They are serious about winning. We run about 10 million tests per month in the entire country (330 million), the results take 2 days or more to come back, contact tracers are in short supply, no one is required to quarantine, etc.

        https://www.cbc.ca/news/wuhan-mass-testing-coronavirus-covid-19-1.5597856

        dpy6629 wrote: “Whatever the case, those states with the most stringent measures also seem to have had the most deaths per capita.”

        Nonsense. The states that imposed the strictest measures were those with the most severe problems at the beginning of April and they have the most cautious citizens today. See this comment: https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-922414

        dpy6629 wrote: “And hospitals were never even close to being overwhelmed except possible in NYC. Speaking of this is really scare mongering. Just as the “ventilator crisis” was largely not justified.”

        Possibly? Remember the long lines waiting to get into NYC hospitals just days after NY imposed its lockdown. What would have happened without that lockdown? The ventilator crisis ended only because doctors discovered that the oxygen levels in many patients improved when they lay on their stomach or other unconventional position. Doctors stopped immediately intubating patients with dangerously low oxygen levels and managed the problem more effectively with repositioning.

        dpy6629 wrote: “The only case in which your ideal world strategy is worthwhile is if a vaccine that is effective shows up soon. The track record is not very good.”

        Wake up. Fauci testified to Congress in late July that “there’s no question we’ll have a vaccine to fight this coronavirus, saying “it will be when and not if”. He said he’s “cautiously optimistic” that the vaccine will even be available by the end of the year”. A pretty bold statement, but based progress in clinical trials so far, not speculation. How many people can be vaccinated and how fast is the next question. We only need to deal with one strain of coronavirus and it has a proof-reading polymerase (like most viruses for which we have effective vaccines). There are multiple strains of influenza circulation every year and it doesn’t have proof-reading. Neither does HIV.

        https://www1.cbn.com/cbnnews/us/2020/june/fauci-expects-vaccine-by-years-end-death-rate-slows-even-as-virus-cases-increase

        dpy6629 writes: “But the economic damage is profound. I fully expect the financial system to approach collapse when mass defaults and bankruptcies start happening. The only alternative may be a massive devaluation of currencies which in the past have been ruinous. A whole class of people who have accumulated some moderate wealth will be ruined, many of them retirees.”

        Agreed. But as I explained, a modestly more effective effort in over 10 weeks would have reduced our case load 10-fold. There are plenty of things we could be doing that would allow everyone to be returning to work by now and still reducing our case load. South Korea has contained its outbreaks without shutting down many businesses or closing their border:

        https://www.npr.org/sections/goatsandsoda/2020/03/26/821688981/how-south-korea-reigned-in-the-outbreak-without-shutting-everything-down

        dpy6629 wrote: “The insanity of this can be seen by asking yourself if you want to lower speed limits to 10 MPH to save 45,000 lives a year. No sane person advocates this approach because public policy is always a balance between lives saved and convenience and freedom.”

        Nevertheless, during a blizzard we do lower the speed limit to 10 mph or even ban driving completely. In fact, most cities order all non-essential workers home before serious snow starts falling because it takes far longer to clean up the mess without accidents, stuck cars, and abandoned cars jamming the road. If you are vulnerable or need to be in contact with vulnerable family members or work with co-workers with vulnerable family members, flying in a plane, taking public transportation to work, or patronizing indoor gyms, bars, and restaurants when 0.1% of the people around you are infectious is a bit like driving in a blizzard every day. After four months, we are worse off than we were in April, with many people still working from home, and serious doubts that schools and colleges will open and remain open this fall. Many customers are NOT going to return until they feel safe. IMO, we aren’t going to be able to fix our economy without reducing the number of cases dramatically. And our leaders are not going to standby while cases explode and we appropriate herd immunity reasonably quickly – because our hospitals will be overflowing.

      • jungletrunks

        Frank, look at where Texas is compared to NY in each of these buckets of statistical data, it offers an opportunity to “re-express” your notes; or be more relevant:

        Rate of U.S. coronavirus cases as of August 3, 2020, by state https://www.statista.com/statistics/1109004/coronavirus-covid19-cases-rate-us-americans-by-state/
        New York number 4, Texas number 15

        Death rates (per 100k) from coronavirus in the United States as of August 3, 2020, by state https://www.statista.com/statistics/1109011/coronavirus-covid19-death-rates-us-by-state/
        New York number 2, Texas number 28

        Number of deaths from coronavirus (COVID-19) in the United States as of August 3, 2020, by state https://www.statista.com/statistics/1103688/coronavirus-covid19-deaths-us-by-state/
        NY number 1 by a large margin, Texas number 8 (and 50% more population)

        Average number of people who become infected by an infectious person with COVID-19 in the U.S. as of August 2, 2020, by state https://www.statista.com/statistics/1119412/covid-19-transmission-rate-us-by-state/
        Close, but Texans are still spreading the disease at a slightly lower rate than NY.

        But Frank says: “If NY “controlled” its pandemic as poorly as TX, there would be about 100,000 new cases a day in NY, and almost 10,000 deaths/day!” An insanely Onion kind of ridiculous.

      • Frank:

        These cases you mention are making us less vulnerable. All your smart countries are remaining vulnerable. We can contain it at a high level at a high cost. Or get past most of the containment at a smaller cost.

        That some countries can do something that is the wrong thing is nice. We are better than them and are showing it now. And a bunch of people are criticizing us as they always do.

        It’s virus and it will pass through many people. It is smarter than us. And we have to accept that we are vulnerable to it up to its limit. Not ours. Each person not infected is like leaving cans of gasoline around for the next fire. They didn’t burn now.

        All these smart countries have cans of gasoline laying all over the place, and are saying, we’re safe. Because we have gasoline can guarders keeping us safe.

    • jungletrunks | August 3, 2020 at 8:42 am | wrote:

      “Frank, look at where Texas is compared to NY in each of these buckets of statistical data, it offers an opportunity to “re-express” your notes; or be more relevant:”

      As I explained – and you chose to ignore – in response to a question I judged the success of NY and TX’s efforts to CONTROL the pandemic based on what happened after NY and TX first had a real opportunity to influence what happened. Due to limited testing and asymptomatic infectious people transmitting the virus, the arrival of the pandemic caught us by suprise. The number of cases in the US doubled every 2.5 days in March – increasing 5000-fold. Much of this happened in the NYC area when passengers brought the disease from Europe at a time when we thought the pandemic was confined to Asia. TX escaped this surge by luck, not skill. NY was one of the first states to issue a lockdown order on 3/20, but it was too late. Those who are infected and who show symptoms do so about 5 days after infection and it takes a few more days before they could get tested and a few more days for results to come in. So April 1, was about the earliest time NY had any REAL opportunity to CONTROL the raging pandemic that was ALREADY raging around them. So I measured the success of their attempts to CONTROL/REDUCE the number of new infections using 4//1 as my starting date. On that basis, NY has gotten 10-fold better and TX 10-fold worse. Deaths lag new infections by several weeks. My starting point for NY’s attempts to control deaths was 4/15.

      I’m tired of hearing all of the BS about cumulative deaths. The deaths on 4/15 were the result of ignorance and policies in effect just before NY locked down. With a pandemic raging, deaths weren’t going to drop to zero in a few weeks no matter what the state did. On the other hand, TX had many months to prepare for the surge that is hitting them now. Plenty of testing. Knowledge of transmission by asymptomatic people. Recognition of the extreme vulnerability of nursing homes. They’d seen what happened in NY and knew it could happen to them. And they failed to prevent it.

      Now, in fairness, part of NY’s reduction in new infections could have been approaching herd immunity. I don’t believe that is what happened, but I can’t prove it.

      • +1

      • jungletrunks

        I wasn’t ignoring you, Frank, I was just providing you a wide angle lens to google through.

        NY wasn’t caught by surprise.

        Trump shot off a warning flare in January with his travel ban on China; this flare signal was met with, in NY, and by all Leftists, a din of racist cries. Even Fauci, early on, was downplaying the virus threat in the U.S. For well over a month, post China ban, NY officials were trumpeting there was nothing to worry about, go to the theatre, what have you.

        The CDC wasn’t cavalier either, Frank. On January 8, the CDC issued an official health advisory about COVID-19. NY ignored it. Or do they not recognize themselves as a primary travel hub for the nation?

        What you’re trying to say is that Leftists were too busy playing a political game and got gobsmacked for ignoring science; they were too busy strategizing about how to make Trump look bad. “NY was one of the first states to issue a lockdown order on 3/20”. Trump orders the travel ban with Europe on 3/11.

        That Cuomo ordered NY nursing homes to accept COVID patients is hard to ignore, it represents a cavalier attitude towards life. The lack of concern for economic viability is another example. We’ve all seen literal examples of the hard core Left wishing the economy would fail; unless one insists on wearing rose colored glasses.

        You conflate Texas efforts of striking a balance between being responsible while maintaining some semblance of commerce to keep the economy from crashing. The general idea to maintain as close to a normal life as possible, yet apply pressure to secure areas when flare-ups occur. A straddle approach, if you will.

        The current trend in Dallas:
        https://public.tableau.com/profile/cityofdallasdtxinnovationteam#!/vizhome/Book3_15862351183220/DFWRegionalCases

        In Houston;
        https://www.tmc.edu/coronavirus-updates/tmc-daily-new-covid-19-hospitalizations/

        Do these charts look indicative of control efforts one month after the onset of the Texas flare-up now that you can see the trend heading down?

        Your slant remains obtuse; it projects.political messaging control, not science based regional COVID-19 control efforts.

      • >Do these charts look indicative of control efforts one month after the onset of the Texas flare-up now that you can see the trend heading down?

        Of course they do. You are still eliding the point Frank made.

      • > Do these charts look indicative of control efforts one month after the onset of the Texas flare-up now that you can see the trend heading down?

        Of course they do.

        > I wasn’t ignoring you, Frank, I was just providing you a wide angle lens to google through.

        You are still not dealing with the main point Frank was making, despite that he pointed out to you that you had done so. So we conclude that you didn’t ignore. his points but deliberately avoided them because their implications troubled you.

        Should we just look at the current rates relative to their peak to conclude that New York has done much better than Texas? That is the logic you are employing.

        This is all very tough. There are no clear answers and public officials are stuck with choosing between different sub-optimal choices. The only simply inexcusable choice is denial and lying, which happens on both sides of the political aisle even if it sometimes differs in magnitude and has an impact which is proportional to the power of the decision-makers.

        It’s certainly true that New York (city and state) was late in it’s response just as it’s certainly true that Texas should have done better than it has done – particularly given the lead time that it had.

        It’s certainly unfortunate that so many people are reflexively tribal in how they filter the relevant information.

      • jungletrunks

        Josh, are you Franks sycophant?

        You sound like a gurgling little bucket of stool; are you obsessed, or possessed? Wipe your lens first before fulfilling my previous request for wiping, you’re see things that aren’t there. Don’t Mess with Texas; as the saying goes; the stats speak for themselves, their flare-up, then down, is indicative of being proactively involved with mitigating the virus.

      • trunks –

        lol. Still with the scatology, eh? Keep it up. It’s quite edifying.

      • Jungletrunks: You provided me two links to hospital capacity in two Texas cities that is currently not strained. Nevertheless, hospital capacity in the states currently undergoing a surge has been in the national news. Stop trying to mislead readers. A quick search turns up an article about Austin hospital, whose normal ICU bed had been full and were using surge capacity:

        https://www.kvue.com/article/news/health/coronavirus/coronavirus-austin-texas-covid19-update-august-4/269-a316c85c-0ce3-4dcd-b996-51ffb74884d7

        South Texas hospital over-capacity and “had adopted a plan to start triaging the sickest patients”:

        https://www.motherjones.com/coronavirus-updates/2020/07/starr-county-rio-grande-valley-texas-covid-hospitals-death-panels/

        Temporary facilities being set up in two Texas convention centers:

        https://www.kxan.com/news/texas-politics/texas-juggles-protective-supplies-space-as-doctors-ration-and-virus-hotspots-linger/

        Given adequate testing and all the experience that has been gained in the past few months, TX certainly had far less reason to be surprised by the current surge that NY in March. While Trump halted air travels from China in late January, he didn’t halt air travel from Europe (except the UK) until March 13 (though he issued the order March 11). As it turns out, the pandemic in NY and most of the US came via travelers from Europe. NY was operating blind at this key moment because of the limited testing capacity at that time and the critical role of transmission via asymptomatic people wasn’t recognized. NY issued lockdown orders one week later on March 20. The day Trump halted travel from Europe, NY had 131 new cases and those people had been infected a week or more before. On the same day NY issued a lockdown, there were 2896 new cases – who were being infected about the time Trump stopped travel from Europe. One week later, NY had 7189 new cases, who were being infected about the time the lockdown order was issued. IIRC, those dying from COVID were typically infected an average of 17 days before death. On April 1, 486 New Yorkers died and they were infected around the time Trump halted flights. On April 7, more than 1000 New Yorkers died and they had been infected around the time the lockdown order was issued.

        At the peak of the current surge, Texas is experiencing about 200+ deaths per day, still only a fifth the number experienced by NY in early April – those who were being infected when the lockdown order was issued. This is why the NY death toll is 32,000 while TX is approaching 8,000. But NY is losing only about 10/day, so in 100 days TX will surpass the NY death total – unless Governor Abbott takes effective action to slow the pandemic and compensate for a likely increase if schools open. The fundamental problem is that – if you are NOT REDUCING rates steadily you can’t continue to return to normal without risky a surge. Now it will take months of restrictions to prevent TX from surpassing NY. Instead you wrote:

        “You conflate Texas efforts of striking a balance between being responsible while maintaining some semblance of commerce to keep the economy from crashing. The general idea to maintain as close to a normal life as possible, yet apply pressure to secure areas when flare-ups occur. A straddle approach, if you will.”

        Your “flare up” is costing at least an additional thousand Texas lives a week and that won’t stop by magic. That is hurting the Texas economy. IMO, the only practical strategy is to focus on winning: faster testing, quarantining those you are sick, warning those who have been exposed and helping them quarantine, masks to reduce transmission, banning high risk non-essential activities such as bars and indoor gyms, safer working conditions, etc. It does NOT mean you need to send everyone home. It does mean you do EVERYTHING ELSE possible so that as many people can continue to work and students can return to school without such surges. Other states and other countries are demonstrating that this is possible.

        Sound bites of Fauci talking in February were taken out of context. He always warned that an uncontrolled increase in cases would follow if the pandemic got a foothold in the US, but that currently (before March) there was no reason for ordinary citizens to panic.

        Hospitals don’t release elderly patients who can’t take care of themselves at home until they have identified a rehabilitation facility that can take them. In our litigious society, nursing homes didn’t want to take in patients recovering from COVID who were no longer believed to be infectious, so it is not surprising that Governor Cuomo needed to order them to do so. Hopefully, Governor Abbott won’t be required to make a similar decision. PCR tests can identify fragments of viral RNA long after a patient is infectious, so the CDC allows medical workers who have had COVID to return to work without testing 10 days after symptoms first appeared and after 1 day with no fever and improving symptoms. The average nursing home has one staff member for every resident. I think and hope that staff members (who could have been asymptomatic) – not recovering hospital patients – introduced COVID into nursing homes. When a lawsuit provides sequencing data to the contrary, I will change my mind. I’m not going to criticize Cuomo because he wasn’t more far-seeing than most other governors and leaders, but each day he failed to fully grasp the onrushing crisis did cost thousands of lives. Governor Abbott’s failure to act as the TX positive test rate rose from 5% to above 10% was far worse.

        Jungletrunks writes: “Your slant remains obtuse; it projects.political messaging control, not science based regional COVID-19 control efforts.

        It is difficult for any of us to know when our biases are making it difficult for us to see the world clearly. I’m outraged that our country has handled this crisis so poorly and the situation is being falsely presented as a choice between the economy and suppressing the pandemic. I personally hate the propaganda from both political extremes. The fact that I’m here at Judy’s should tell you I’m not addicted to liberal Kool-aid and think for myself. The fact that you didn’t realize that the current surge in Texas is exceeding the capacity of some hospitals suggests that your view of reality could be distorted.

      • jungletrunks

        Frank, you’re being petty while trying to buttress a farce.

        On the same date as Trump’s China travel ban, on Jan. 31, the administration also declared the coronavirus a public health emergency; Cuomo ignored that too. On Feb. 9, the White House Coronavirus Task Force briefed governors from across the nation at the National Governors’ Association Meeting in Washington; NY’s gov. Cuomo also ignored this. Add these to my prior list.

        The particular Texas COVID stats that I previously posted were used because they represent the two most populous metroplexes in Texas, both accounting for nearly one third of the states population.

        The example used in your last July 30 article is titled: “South Texas Hospitals Are Overwhelmed by COVID-19”. It targets Starr County’s tiny 29-bed COVID-19 unit as its example. I don’t mock Starr County’s 29-bed stress; but please, Frank, really? The entire Rio Grande Valley population is only roughly 1.3 million.

        Your middle August 4th link: “Texas juggles protective supplies, space as doctors ration and virus hotspots linger”. Linger is the operative word here, Frank. I’m certain we’ve already established that Texas had a July “COVID peak”. But Gov. Greg Abbott addressed these particular supply struggles for the areas of need within the same article you posted: “We have abundant supplies to make sure that we will be able to continue to provide PPE to schools, to hospitals, to nursing homes, to testing sites to any operation in the state of Texas”.

        Your first articles headline: “Hospital ICU capacity out of ‘surge stage’, but Austin remaining in Stage 4”. Translation of “Out of surge stage” implicitly means declining. Here’s an Austin chart similar to what I posted for Dallas and Houston: https://www.kvue.com/article/news/health/coronavirus/texas-coronavirus-austin-health-update-july-28/269-6d178d74-a683-4e07-a2ad-c8c0565e1f5f Within the same article you post, Austin Health Authority Dr. Mark Escott told the Travis County Commissioners “APH wants to see Austin stay in the Stage Three territory for two weeks before they transition the City into a Stage Three coronavirus response.” According to Escott, the number of new hospital admissions, which had decreased since the middle of July, has flattened out over the past several days. The commissioner is concerned about elderly demographics.

        So you’ve cherry picked a few unremarkable headlines, contextually speaking, relating to the backend of Texas’ recent COVID surge. And as part of your politically driven perception continue to brag about NY being one of the earliest states to announce a lock-down; while implicitly, sanctimoniously, disparaging Texas for being behind the curve.

        Texas went into lock-down one day before New York, on 3/19. Texas didn’t need to see the same deaths as NY, Frank.

        Texas has been far, far less deadly than NY relative to COVID-19, including with its recent surge. Texas has a different strategy for mitigating the virus while attempting to keep the state economically viable.

        Let’s review the per capita body count and total hospitalizations in 2021 in relationship to each states economic productivity before continuing on with more of politically centric crow.

        Nothing personal, you’re better with science issues.

      • jungletrunks

        I don’t buy the Cuomo spin about sending COVID patients to nursing homes either, not only because of the reporting of this article; but this is good enough for now:
        https://nypost.com/2020/05/10/cuomo-was-wrong-to-order-nursing-homes-to-accept-coronavirus-patients/

      • Frank+Cuomo+De Blasio+AOC=clueless

      • jungletrunks

        Don, Maria Bartiromo just did a segment on Cuomo+De Blasio. Very little media will report much about NY’s woes. NYC’s upper east side just reported a 286% increase in crime; robberies, shootings, murder.

        In a Monday press conference Cuomo was literally begging people to come back to NY: his personal plea, exact words; “I literally talk to people all day long”…”You gotta come back”…”We’ll go to dinner”…”I’ll buy you a drink”. Not to jab NY; I say this out of great concern for the nation, its revenue is crashing. Unfortunately it’s the nation that pays the price for certain states ineptitudes and poor policy decisions. What makes it worse is the sizable numbers within the respective electorates of these states who want these very things to occur for purely ideological, cultish reasons.

      • jt,
        The disingenuous destructive left goons are trying to tear apart the society that has provided the most good for the most people in the history of our little planet. I am headed to the airport in a few minutes off to spread the word. We are going to stop them.

      • “I say this out of great concern for the nation, its revenue is crashing. Unfortunately it’s the nation that pays the price for certain states ineptitudes and poor policy decisions. What makes it worse is the sizable numbers within the respective electorates of these states who want these very things to occur for purely ideological, cultish reasons”.

        Last I checked New York was near the top in donating to the common good.

        “Residents in Connecticut, Massachusetts, New Jersey and New York have some of the highest tax bills in the nation. They also pay thousands more in federal taxes than their state receives back in federal funding.

        In total, 10 states are so-called donor states, meaning they pay more in taxes to the federal government than they receive back in funding for, say, Medicaid or public education. North Dakota, Illinois, New Hampshire, Washington state, Nebraska and Colorado round out the list”.

        https://www.governing.com/week-in-finance/gov-taxpayers-10-states-give-more-feds-than-get-back.html

      • jungletrunks

        Cross, forgive me; I mistook the high pitch whirling of your talking point rolodex for a low flying jet.

        The tyranny of fuzzy math is a tactical method the Left fully embraces, here you present a recurring talking point theme.

        Red states receive 35.75 percent on average of their budgets from the federal government, while blue states receive 30.80 percent. But it’s because blue states’ budgets are far larger, call it bloat. The 10 states in the best fiscal condition are almost all red states. The 10 states with the worst numbers are almost all blue states. Notice I say almost? It’s because I’m not trying to score while using ridiculous talking points. But if you look at the amount of money the federal government gives to states on a per capita basis, blue states get more.

        The average taxpayer in blue states does pay a higher per capita income tax than the average taxpayer in red states. But that’s because those states have more rich people. Don’t the Democrats want the rich paying their fair share? I’m sure other Staes would appreciate their residency, in fact they’re indeed moving.

        To rectify some of the disparity, Congress passed the Tax Cuts and Jobs Act (TCJA) in 2017. It put a cap of $10,000 on state and local tax deductions (SALT). Without it, rich people in blue states that had bloated, wasteful, high state and local taxes were able to deduct those ridiculously huge tax numbers from their federal taxes, resulting in those states sending far less money to the federal government. One can always count on fuzzy math when it comes to the Left.

      • Matthew R Marler

        franktoo: I’m outraged that our country has handled this crisis so poorly and the situation is being falsely presented as a choice between the economy and suppressing the pandemic.

        I think that your rage is misplaced and that there has been a large economic cost to the actions taken by governors in closing down sectors of the economy.

        As to the “this country”, do recall that China and WHO supplied misinformation at the start; other countries with high rates of death include Sweden, Chile, Peru, Brazil, Spain, United Kingdom, Belgium, Panama, France, Mexico… . This country is now conducting about 900,000 tests per day, after a slow start.

        This country has many vaccines and medicines in development (more than the EU? That I am not fully up to date on) and numerous clinical trials underway.

        As to Texas in particular (and CA, AZ, and FL), if the high death rates of the past week continue for 100 days, unlike NY, NJ, and MA, that will certainly be noteworthy. Meanwhile, as in CA, TX has no shortage of hospital beds, but a few local shortages of ICU beds and medical staff.

        Back to outrage: CCP and WHO lying at the start? CDC incompetence at the start? FDA foot-dragging? Fauci and Trump telling us simultaneously that we would have few cases? Fauci and Trump telling us simultaneously that HCQ would be worth a try (in Fauci’s case, to give patients hope even though there was no evidence in support of it.) Gov Cuomo ordering nursing homes to admit discharged patients even though the NYC hospitals had surpluses of beds outside their ICUs; after Cuomo and de Blasio deprecated Trump’s travel bans? Fauci praising Cuomo’s lockdown order?

  36. Amazing how many variations of infection rates are going around for different countries and often even in the same country.
    Do we rely on illness diagnosis, throat swab testing or bloodstream antibody testing. Different Hemispheres, different seasons and different people.
    Herd immunity obviously means different things for different populations depending on their innate infection sensitivity, which could also be due to different strains of the virus.
    Did India and Australia get the Mark 2 10 times less dangerous virus?
    Did Italy and New York and London and Spain get the bad Wuhan super virus?
    Why is New Zealand so safe ( no one wants to go there)?
    Do Indians actually take any chloroquine?
    Extrapolating panic headlines about Korean and Indian levels of infection does little to help.
    Particularly India where as far as I recall they have not done 1 billion tests yet.
    The best interpretations will depend on antibody level testing of selected population groups around the world and for the obvious socioeconomic factors will never get it right.
    I would estimate that the true yearly prevalence is going to be between 1-10% of most populations. The death rate will be highly skewed to older people for as yet unknown reasons due to how easily and severely they catch it.
    It will also be higher in enclosed building complexes like hospitals nursing homes and apartment towers. Away from the epicentres the risk will drop dramatically. Town mouse V Country mouse.
    What is the current estimated USA number of infected people anyway 4 million or >1%, or 30 million I.e. < 10%?
    Death rate at 150,000 is < 0.05%
    1 in 2000.

    • If you want to know how many cases there are, divide the deaths by the mortality rate- which means the US has 20-30 million cases and the EU more.
      Based on the stats, the US has 3.4% mortality rate of reported cases and the EU over 10%. CNN, two days ago, said the president of the US was “obviously wrong” when he said this meant we had a lower mortality rate, but they “reported” this without any evidence at all. They can’t provide any evidence, of course, because that would force them to admit testing was more prevalent in the US than Europe (which they have inaccurately denied), spread was worse in Europe than the US (which they have inaccurately denied) and/or the US better protected vulnerable populations (which they have inaccurately denied.)

      One day we’ll see accurate stats. But not before November.

  37. Curious George

    No lessons learned from the Spanish flu (1918-1920)?

    • George: I did some reading about the 1918-20 Spanish flu and herd immunity and commented at the link below. Three references in the comment below. No reply from Nic so far.

      https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-922035

      The Spanish flu came in three waves in many places and therefore was probably brought to a halt twice well short of herd immunity by fear and public policy. R_0 was about 1.8, so that pandemic likely was easier to bring to a temporary halt well short of herd immunity. Fear was much greater since the death rate was highest between 20 and 45 (due of cytokine storms in that age group).

    • The lesson from the Spanish Flu is the lesson of all science. One simulation run is never enough to provide good evidence that an approach is appropriate. Analogy can be dangerous as well as helpful.

      Too much of this pandemic has been trying to fit flu to coronavirus. They are similar, but not the same. The differences in the way the virus affects a person before it can cause itself a spread is the material issue I think, and we just don’t have a solid handle on that at present.

      If we admitted how little we do know, we may get further.

    • Confirmation bias? They?
      This paper is toxic. It makes no mention of randomised clinical trials which have supported the use of HCQ, and cites two major trials which provide the “definitive findings” against its use. These trials are the UK Recovery trial and the European Solidarity trial. The UK Recovery trial was stopped in early June because the investigators found they were killing off patients with the late stage administration of very high dose rates of HCQ to very sick patients. The European Solidarity trial tests of HCQ were stopped a short time afterwards, citing as input the results of the UK Recovery trial.

      Below are the conflict of interest disclosures from the paper you cite:-
      “Conflict of Interest Disclosures: Dr Califf reported being head of clinical policy and strategy at Verily Life Sciences and Google Health, an adjunct professor of medicine at Duke University and Stanford University, a board member for Cytokinetics, and former commissioner for the FDA. Dr Hernandez reported receipt of grants and personal fees from AstraZeneca, Amgen, Boehringer Ingelheim, Novartis, and Merck, personal fees from Bayer, and grants from Janssen and Verily, as well as being the principal investigator for the Healthcare Worker Exposure & Outcomes Research (HEROES) Program funded by the Patient-Centered Outcomes Research Institute. Dr Landray reported receipt of grants from Boehringer Ingelheim, Novartis, The Medicines Company, Merck, Sharp & Dohme, and UK Biobank and being co–chief investigator for the RECOVERY trial of potential treatments for hospitalized patients with COVID-19, funded by UK Research & Innovation and the National Institute for Health Research (NIHR).”

      Note in particular that Martin Landray was one of the two individuals responsible for the UK Discovery trial, which gave 2400mgs frontend loading dose of HCQ (no test of zinc or azithromycin) to very sick patients within the first 24 hours and 3200mgs within the first 48 hours. In an interview with France Soir, he then stated that the lethal dosage rate of HCQ was somewhere around 10 times what they had used, and moreover stated that the dosage used was the same as for amoebic dysentery. https://www.youtube.com/watch?v=31VEJlRyB2c His colleague Professor Horby denied that he had said this.

      This led some doctors to infer that he had confused hydroxychloroquine (which is not generally used to treat amoebic dysentery) with hydroxyquinoline.
      About 1 in 4 patients in the UK Recovery trial died. This was not a test of early stage treatment. These were already very sick people. They trial lost more patients from the HCQ treatment arm, very probably from the excessive dosage levels, since the increased mortality observed was similar to that observed in the Brazil clinical trial which tested very high dosage levels (@1600mgs pd) of HCQ on very sick patients. The Brazilian doctors are facing criminal charges. The Brazilian medical team published a preprint on 7th April highlighting that they had observed increased mortality from their high dose cohort. The UK Recovery trial went on administering their high dose levels long after the Brazilian data became public. They did however in mid April remove the pharmokinetic calculations from the updated Recovery Report, as well as the Q&A’s related to dose rate.

      Now two months after the headline report that HCQ showed no benefit, we are still awaiting the publication of the results.

      The above may not be as sinister as it first appears. In late March, however, a number of commenters raised questions about the protocol published for the UK Recovery trial of HCQ, and concluded that it was purposely designed to fail. Forgive me if I do not accept this paper as a simple unbiased assessment of the benefits of RCTs over clinical observation data.

      • That’s Saddam Hussein approach. Negotiate until the problem goes away.

      • Franktoo (aka Frank)

        Kribaez: The linked paper is complaining about “observational studies”, not random assignment clinical studies. The RTC you mentioned above proved that the doses used of HCQ were hurt, not helped patients desperately ill with COVID-19. It didn’t prove that a lower dose isn’t helpful, nor a combination with azithromycin or zinc – but why anyone would want to try that combination when it doesn’t enhance the activity of HCQ in cell culture experiments is a total mystery to me. Zinc (and essential nutrient) competes with magnesium as the counter-ion in thousand of enzymatic reactions involving ATP and other phosphate-containing substrates. The chances of zinc selectively interfering with viral RNA polymerase and at some magic concentration that is not toxic to host cell processes is small.

        The paper linked above begins:

        “Amid the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, substantial effort is being directed toward mining databases and publishing case series and reports that may provide insights into the epidemiology and clinical management of coronavirus disease 2019 (COVID-19). However, there is growing concern about whether attempts to infer causation about the benefits and risks of potential therapeutics from nonrandomized studies are providing insights that improve clinical knowledge and accelerate the search for needed answers, or whether these reports just add noise, confusion, and false confidence. Most of these studies include a caveat indicating that “randomized clinical trials are needed.” But disclaimers aside, does this approach help make the case for well-designed randomized clinical trials (RCTs) and accelerate their delivery? Or do observational studies reduce the likelihood of a properly designed trial being performed, thereby delaying the discovery of reliable truth?

        The authors of this paper are complaining about observational or non-random-assignment studies like the following one I looked into:

        https://www.ijidonline.com/article/S1201-9712(20)30534-8/abstract

        The Henry Ford Health system reported on their experiences with HCQ, alone and with azithromycin. (Adding azithromycin had no effect.) In this study, doctors prescribed what they thought was best for individual patients and administrators kept track of the results. HCQ provided a 66% reduction in mortality! However, doctors did not to prescribe HCQ to patients with cardiovascular problems, permitting them to report no torsades de pointes, the side effect that harms or even kills patients in other HCQ trials. And since cardiovascular problems are a co-moridity that greatly increases the risk of death for COVID, the group that got HCQ were expected to be more likely to survive whether or not they received HCQ! As it turns out, the group that received HCQ had an average age 5 years young than the group that didn’t. Again, the HCQ group was more likely to survive whether or not they received HCQ! (The authors tried to correct for this problem using a multi-factor analysis, but used groups aged less than and greater than 65. The increase in mortality rises dramatically with age and is poorly described by two such groups.) Worst of all, the HCQ group was twice as likely to have also been given a steroid anti-inflammatory drug. In properly controlled random assignment clinical trials dexamethasone has shown a 30% survival benefit – the biggest improvement seen in any random assignment clinical trial so far. Therefore the HCQ group again would be expected to have a survival advantage even if they didn’t get HCQ! (The benefits of steroid treatment were not statistically significant in a multi-factoral analysis because the treatment and control groups had so many differences and the confidence intervals were wide. So the authors chose not to correct for the beneficial effects of steroids.) These were all problem I personally identified, but there could be others.

        Such observational studies can be valuable in deciding whether to invest in a properly-controlled random-assignment clinical trial with HCQ or HCQ + azithromycin or zinc. (Patients with higher zinc in their blood samples might be more likely to benefit from HCQ.) However, Cardiff et al in the paper above are arguing that the only trials that matter today are the properly-controlled random-assignment trials that will provide a definitive answer. In such trials, one decides what patients can be safely treated with HCQ (an “intent-to-treat” group) and then randomly assigns them to get HCQ or a placebo. However, withholding a known effective treatment from a patient in a clinical trial is unethical, making it hard to run a placebo controlled trial.

      • Franktoo,
        Thanks for the comment. You are raising several issues. Let me try to deal with them separately.
        Firstly, why zinc? I am agnostic. From the little I have read, zinc has been studied as an antiviral agent or catalyst for other agents for at least fifty years. It is now essential to a number of important antiviral treatments. Importantly, it is associated with multiple, very complex mechanisms, only one of which is inhibition of intracellular transcription for certain types of virus. I do not know whether it is beneficial or not in the treatment of Covid-19. The jury is still out, as far as I am concerned, but I suspect from observed correlatives that, if you are exposed to the virus, it is a good idea not to be deficient in either Vitamin D or zinc. Perhaps in vivo beats in vitro. Here is an abstract from Carlucci et al, which you might want to peruse:-
        “As a result of in vitro evidence suggesting zinc sulfate may be efficacious against COVID-19, our hospitals began using zinc sulfate as add-on therapy to hydroxychloroquine and azithromycin. We performed a retrospective observational study to compare hospital outcomes among patients who received hydroxychloroquine and azithromycin plus zinc versus hydroxychloroquine and azithromycin alone. Methods: Data was collected from electronic medical records for all patients being treated with admission dates ranging from March 2, 2020 through April 5, 2020. Initial clinical characteristics on presentation, medications given during the hospitalization, and hospital outcomes were recorded. Patients in the study were excluded if they were treated with other investigational medications. Results: The addition of zinc sulfate did not impact the length of hospitalization, duration of ventilation, or ICU duration. In univariate analyses, zinc sulfate increased the frequency of patients being discharged home, and decreased the need for ventilation, admission to the ICU, and mortality or transfer to hospice for patients who were never admitted to the ICU. After adjusting for the time at which zinc sulfate was added to our protocol, an increased frequency of being discharged home (OR 1.53, 95% CI 1.12-2.09) reduction in mortality or transfer to hospice remained significant (OR 0.449, 95% CI 0.271-0.744). Conclusion: This study provides the first in vivo evidence that zinc sulfate in combination with hydroxychloroquine may play a role in therapeutic management for COVID-19.”
        Secondly, you raise good questions about the validity of the Henry Ford study. All retrospective studies are opportunistic, and carry some bias and, very often, confounding co-variation in key variables, something very evident in this instance in the total dataset. You take what you can find. In this instance, I cannot fault the methodology applied by the authors. They used a nested multivariate regression on the total dataset to test for the variables which might be having an effect, and then they did a good job (in fact a quite remarkable job in mathematical terms) of defining two groups with matching propensities, for their final comparison. The three confounding variables which you mention – cardiovascular problems, steroid treatment and age were all matched to two significant figures between the two groups in the matched propensity sets. (Your comment about age dependence applies to the total dataset, I think, unless you have some additional information about age distribution in the matched datasets?) There might indeed be major biases arising from treatment choices in the total pre-matched sets, but the authors seem to have done a very fair job of trying to eliminate these biases in the matched sets. And they still find a significant benefit from HCQ in the matched sets. Is this result definitive proof? No, it is not. It is just more weight added to the positive side in the balance of evidence.
        This brings me to the third point you discuss – the need for an RCT, preferably double-blinded against a placebo control group, without which Fauci will not take an aspirin apparently. There are at least three relevant issues to be considered:- risk management, ethics and statistics. Ethics and statistics say that we will not see a valid RCT this year of efficacy of early treatment – at least not in the USA or Europe. When doctors in Europe were invited to support the Solidarity trial of HCQ, many refused. Some stated or wrote publicly that it was because the trial was poorly targeted on late treatment of hospitalised patients already very ill, when there was already evidence that benefits were marginal at best. However, many also made statements (in France, Italy and Spain especially) that they thought that it was unethical to run a RCT which involved giving placebos to known infected patients when early treatment with HCQ had already proven itself on the available evidence to be a safe way of reducing the risk of severe ARDS and death. The trial therefore involved doing harm to patients by withholding beneficial therapy.
        Alongside this medical resistance, the statistical problem is also substantial. Somewhere below I did some very simple design calculations to illustrate the participant numbers required for a trial of sufficient power to allow HCQ to prove itself under the assumption that early treatment could halve the number of hospitalisations and deaths. In all areas which have already been hard hit, IFR’s are falling, probably as a result of younger, healthier patients being tested positive. If severe illness is going to affect less than 5% of COVID-19-positive patients, then a participant group of around 1000 people seems like the minimum necessary to obtain any statistical power in comparisons of early treatments. Yet one trial in New York at St Francis Hospital (see reference by James Cross below) has been trying to recruit just 750 people since April and has still not moved into active status. This trial does not include a placebo group. Personally, I would be more inclined to be recruited into this trial than into a trial where I have a 50% chance of receiving a placebo rather than a HCQ treatment – especially knowing that I could not receive any steroids in the control group for fear of biasing the trial results! However, I would be even more inclined to find a doctor willing to prescribe a HCQ/Az/Z combination for the first five days and then, if the worst happens, to transfer me into a hospital where I may be able to receive steroids or alternative hail mary treatment.
        There are so many obstacles to a rigorous RCT that I am fairly certain that it not going to happen this year – in the USA or Europe, at least. This then brings me to the risk management question. If the preponderance of evidence suggests that something is beneficial, but it has not yet been fully tested in a definitive RCT, do you wait or do you start applying it? The answer clearly depends on safety concerns. If you believe that the risks of harm can be reduced to a very small probability, by excluding from treatment certain cardiovascular problems, retinopathy and G6PD contraindications, why would you NOT allow doctors the liberty to prescribe?

      • Kribaez: Personally, I would be more inclined to be recruited into this trial than into a trial where I have a 50% chance of receiving a placebo rather than a HCQ treatment – especially knowing that I could not receive any steroids in the control group for fear of biasing the trial results!

        That is interesting, especially the qualification. I would prefer to enroll in a placebo-controlled study with random assignment because I know that it has a higher chance of getting a correct result — but, as you say, only if the HCQ is independent of the other potential confounders.

        Without the placebo control, there is no way to tell whether the treatment made a difference. With confounding, the problem of attribution of any apparent effect is present. The ethical argument against placebo control always depends on knowing the probable result of the clinical trial in advance. Otherwise you have no reasoned expectation of which group has been exposed to the higher risk.

      • Mr. kribaez’s preference for a trial that doesn’t assign patients with a deadly disease to a placebo arm is not half as interesting, as it is sensible.

    • Repeat attempt to post with some bad words removed.

      Confirmation bias? They?
      This paper is toxic. It makes no mention of randomised clinical trials which have supported the use of HCQ, and cites two major trials which provide the “definitive findings” against its use. These trials are the UK Recovery trial and the European Solidarity trial. The UK Recovery trial was stopped in early June because the investigators found high mortality in patients after the late stage administration of very high dose rates of HCQ to very sick patients. The European Solidarity trial tests of HCQ were stopped a short time afterwards, citing as input the results of the UK Recovery trial.

      Below are the conflict of interest disclosures from the paper you cite:-
      “Conflict of Interest Disclosures: Dr Califf reported being head of clinical policy and strategy at Verily Life Sciences and Google Health, an adjunct professor of medicine at Duke University and Stanford University, a board member for Cytokinetics, and former commissioner for the FDA. Dr Hernandez reported receipt of grants and personal fees from AstraZeneca, Amgen, Boehringer Ingelheim, Novartis, and Merck, personal fees from Bayer, and grants from Janssen and Verily, as well as being the principal investigator for the Healthcare Worker Exposure & Outcomes Research (HEROES) Program funded by the Patient-Centered Outcomes Research Institute. Dr Landray reported receipt of grants from Boehringer Ingelheim, Novartis, The Medicines Company, Merck, Sharp & Dohme, and UK Biobank and being co–chief investigator for the RECOVERY trial of potential treatments for hospitalized patients with COVID-19, funded by UK Research & Innovation and the National Institute for Health Research (NIHR).”

      Note in particular that Martin Landray was one of the two individuals responsible for the UK Discovery trial, which gave 2400mgs frontend loading dose of HCQ (no test of zinc or azithromycin) to very sick patients within the first 24 hours and 3200mgs within the first 48 hours. In an interview with France Soir, he then stated that the lethal dosage rate of HCQ was somewhere around 10 times what they had used (!), and moreover stated that the dosage used was the same as for amoebic dysentery. https://www.youtube.com/watch?v=31VEJlRyB2c His colleague Professor Horby denied that he had said this.

      This led some doctors to infer that he had confused hydroxychloroquine (which is not generally used to treat amoebic dysentery) with hydroxyquinoline.
      About 1 in 4 patients in the UK Recovery trial died. This was not a test of early stage treatment. These were already very sick people. They trial lost more patients from the HCQ treatment arm, very probably from the excessive dosage levels, since the increased mortality observed was similar to that observed in the Brazil clinical trial which tested very high dosage levels (@1600mgs pd) of HCQ on very sick patients. The Brazilian doctors are facing criminal charges. The Brazilian medical team published a preprint on 7th April highlighting that they had observed increased mortality from their high dose cohort. The UK Recovery trial went on administering their high dose levels long after the Brazilian data became public. They did however in mid April remove the pharmokinetic calculations from the updated Recovery Report, as well as the Q&A’s related to dose rate.

      Now two months after the headline report that HCQ showed no benefit, we are still awaiting the publication of the results.

      The above may not be as sinister as it first appears; incompetence cannot be ruled out. In late March, however, a number of commenters raised questions about the protocol published for the UK Recovery trial of HCQ, and concluded that it was purposely designed to fail. Forgive me if I do not accept this paper as a simple unbiased assessment of the benefits of RCTs over clinical observation data.

    • Matthew,
      Watch this space. I have two comments trapped in moderation.

      • kribaez: Watch this space. I have two comments trapped in moderation.

        Got them. Thanks.

        I was disappointed by the article, but I put it up anyway to see if it would attract comment.

    • “noise, confusion, and false confidence” NCFC?

      Yes. Generally the skeptics on this forum are all about nitpicking studies and study methodologies but, if the study happens to confirm something they like, many here are ready to jump on board with the conclusions. That goes for most of us (myself included) to one degree or another.

      “The benefits of this approach, if well done, are obvious: by sifting potential treatments and measuring outcomes and safety signals, qualified investigators and funding agencies can choose the most promising therapies for testing in rigorous RCTs”.

      The widespread consensus in the medical community (and this i where Fauci comes from) is that randomized controlled trials are the only things that are reliable in the end. Fauci, I think, would be ready along with almost everyone else to recommend HCQ or HCQ+ (or probably even disinfectant) is a decent RCT showed value.

      • James,
        Yes, confirmation bias can hit any of us.

        This paper by Professor Harvey Risch (downloadable pdf) was written in early May, but published in the American Journal of Epidemiology in late May, unfortunately almost coincident with the fake Lancet paper, which grounded HCQ use. It sets out the (counter)case for not waiting on RCT results. https://academic.oup.com/aje/article/doi/10.1093/aje/kwaa093/5847586

        It is now becoming increasingly unlikely that we will see a European or US RCT this year which tests early treatment of COVID-19 with HCQ/Az/Zinc, despite calls since March. Perhaps we will never see one. For some reason, I am reminded of the old song: “There’s a hole in my bucket, dear Liza, dear Liza.”

      • There are still about a ton of studies underway testing HCQ. If the pandemic does not suddenly end and the anti-HCQ propaganda is not successful in ending HCQ treatments, we could expect that dozens of trials will be completed and results reported:

        https://clinicaltrials.gov/ct2/results?cond=covid+19&term=hydroxychloroquine&cntry=&state=&city=&dist=

        In the meantime, we have several countries and significant numbers of docs in most countries, who believe from observing HCQ use in clinical practice over the last 6 months, that it works.

        What we do know from the results of the trials and retrospective studies we have seen so far is that HCQ is not a deadly drug, as the left loons would have everyone believe to discourage its use, because Orange Man Bad.

      • Don,
        Your list looks impressive, but if you filter the trials, you will find that very few of the US and European trials are actually on target to test early treatment with some combination of HCQ/Az/Z vs a standard care control group, and the few that get close to the target objective have inadequate participant numbers to provide meaningful results.

        I commented recently on a paper by Skipper which set out to test the benefits of HCQ as an early treatment. (https://judithcurry.com/2020/07/06/covid-discussion-thread-part-x/#comment-921169). The results showed twice as many hospitalisations and deaths in the control group as in the HCQ-treated group – similar to other trials elsewhere – but this difference failed to achieve statistical significance, and so the result was reported as “no significant difference between the control group and the HCQ group”. There were over 400 participants in this study. The problem was that the total number of people who ended up hospitalised or dead were (only) 15 people, about 3.6% of the participants.

        It is interesting to do some design sums on the number of participants required to reach significance with different levels of hospitalisations and deaths, under the assumption that there are always twice as many hospitalisations and deaths in the control group as in the treated group.

        If the control group has 10% hospitalisation and deaths, and the HCQ group has 5%, then, with equal cohorts, you would need a participant group of almost 500 people to be able to show statistical significance at 95% confidence.

        At 6% and 3% respectively, you would need about 800 participants.

        At 4.76% and 2.38% respectively – which is very close to the actual outcome numbers observed in the Skipper study – you would need a participant group of at least 1000 people to be able to show statistical significance at 95% confidence.

        In other words, it is very easy to set up early stage treatment RCTs which will fail to show significant benefit – even when there really is a very substantial benefit there. It follows that we will only see “definitive findings” from an RCT when there is a strong will to carry out a rigorous test of sufficient statistical power.

      • kribaez: In other words, it is very easy to set up early stage treatment RCTs which will fail to show significant benefit – even when there really is a very substantial benefit there. It follows that we will only see “definitive findings” from an RCT when there is a strong will to carry out a rigorous test of sufficient statistical power.

        Thank you for the calculations. That was a good post.

      • What you wrote is quite correct, krib. We may not ever get exactly the trial we want with the protocol we would prefer and of the necessary size to definitively give the thumbs up or thumbs down on HCQ. But the fact remains that there are a ton of trials underway testing HCQ alone and in a variety of combinations against the COVID.

        If HCQ has a significant effect on the virus, it seems to me that should show up in some of these trials. Anybody but a TDS suffering left loon should be hopeful that it proves to be useful. It’s going to take strong evidence to overcome the vendetta against HCQ mounted by the TDS crowd, because Orange Man Bad “touted” it.

        Maybe after the political season is behind us for this cycle and POTUS The Donald is firmly ensconced in the WH for FOUR MORE YEARS!, HCQ can get a fair shake.

        I am getting geared up to hit the road for MAGA, as I did in 2016. Not going to be wasting much time here on pest control of our left loon bozo contingent.

        I’ll be back.

      • PS: Little weasel apparatchik backstabber Fauci declared HCQ dead based on the totally and obvious fake retrospective Lancet study, but he finds the Ford Hospital retrospective that indicated effectiveness for HCQ “flawed” and of no significance:

        https://www.detroitnews.com/story/news/local/michigan/2020/07/31/anthony-fauci-henry-ford-health-hydroxychloroquine-study-flawed/5559367002/

      • James,
        The study you reference (NCT04370782) looks very useful. However, it does not test HCQ+ against a randomised control group. It does directly test the relative merits of the inclusion of Azithromycin vs Doxycycline.

        To assess the efficacy of HCQ+ from these results will require a comparison of the outcomes against a control group selected post hoc with matched propensity scores. This is known as a retrospective analysis – exactly the same type of analysis carried out by Ford Hospital on 2541 patients. Since Fauci has rejected the results of Ford Hospital as inadequate, it is not obvious to me why he would accept a retrospective analysis on a smaller number of participants.

      • Paper submitted to NEJM on the Univ. of Minnesota trial that little weasel Fauci cites as a nail in the coffin for HCQ. The paper also discusses “some inaccuracies in the statistical analysis of Boulware et al.”:

        https://arxiv.org/ftp/arxiv/papers/2007/2007.09477.pdf

        “We conclude their randomized, double-blind, placebo-controlled trial presents statistical evidence, at 99% confidence level, that the treatment of Covid-19 patients with hydroxychloroquine is effective in reducing the appearance of symptoms if used before or right after exposure to the virus.”

        “For 0 to 2 days after exposure to virus, the estimated relative reduction in symptomatic outcomes is 72% after 0 days, 48.9% after 1 day and 29.3% after 2 days.”

        “We conclude that, when applied as a prophylaxis, it can significantly reduce the relative proportion of symptomatic patients if used from 0 to 2 days after exposure to the virus (71.98% for 0 days, 48.86% for 1 day and 29.33% for 2 days).”

        “Moreover, our results show that the elapsed time between the exposure to the virus and the beginning of treatment is vital to the effectiveness of the antiviral use.”

        “We expect the treatment will be more effective when applied to patients in the viral replication period, before viral load reaches its peak which occurs around 5 days after symptom onset.”

    • James –

      > Fauci, I think, would be ready along with almost everyone else to recommend HCQ or HCQ+ (or probably even disinfectant) is a decent RCT showed value.

      To think otherwise is to believe that there as a very high prevalence of sociopaths walking around in the public health community – an implausibility that doesn’t stop the conspiracy ideologists.

  38. ISTM that unless a model can reproduce the Swedish curve and the German curve, by altering parameters that can be verified from the data (like care home infections) then it is no good at all for prediction.

  39. Pingback: Why Herd Immunity to COVID-19 is Reached Much Earlier Than Thought – Update | US Issues

  40. I commend this interview with Anders Tegnell concerning Sweden’s approach to the CV epidemic to anyone interested in understanding it and the reasons for it: https://unherd.com/2020/07/swedens-anders-tegnell-judge-me-in-a-year/

    • Steven Mosher

      42% prevalence in this study

      https://videocast.nih.gov/watch=38084?jwsource=cl

      • Also:

        –snip–

        Mathematicians at the University of Sussex have warned the scientific community, government and the public about the risk of complacency over the level of ‘herd immunity’ required to stem the Covid-19 pandemic.

        Some models have previously predicted that ‘herd immunity’ – where enough people have become immune to Covid-19 to stop it from spreading – could be reached with infection levels as low as 20 to 40 per cent. But a new paper from the University of Sussex urges caution to those taking comfort from these figures.

        –snip–

        http://www.sussex.ac.uk/broadcast/read/52428

        –snip–
        The contact structure of a population plays an important role in transmission of infection. Many “structured models” capture aspects of the contact structure through an underlying network or a mixing matrix. An important observation in such models, is that once a fraction 1−1/R0 has been infected, the residual susceptible population can no longer sustain an epidemic. A recent observation of some structured models is that this threshold can be crossed with a smaller fraction of infected individuals, because the disease acts like a targeted vaccine, preferentially immunizing higher-risk individuals who play a greater role in transmission. Therefore, a limited “first wave” may leave behind a residual population that cannot support a second wave once interventions are lifted. In this paper, we systematically analyse a number of mean-field models for networks and other structured populations to address issues relevant to the Covid-19 pandemic. In particular, we consider herd-immunity under several scenarios. We confirm that, in networks with high degree heterogeneity, the first wave confers herd-immunity with significantly fewer infections than equivalent models with lower degree heterogeneity. However, if modelling the intervention as a change in the contact network, then this effect might become more subtle. Indeed, modifying the structure can shield highly connected nodes from becoming infected during the first wave and make the second wave more substantial. We confirm this finding by using an age-structured compartmental model parameterised with real data and comparing lockdown periods implemented either as a global scaling of the mixing matrix or age-specific structural changes. We find that results regarding herd immunity levels are strongly dependent on the model, the duration of lockdown and how lockdown is implemented.
        –snip–

        https://arxiv.org/abs/2007.06975

      • “However, if modelling the intervention as a change in the contact network, then this effect might become more subtle. Indeed, modifying the structure can shield highly connected nodes from becoming infected during the first wave and make the second wave more substantial.”

        Translation: lockdowns and other government interventions may worsen the subsequent outlook for epidemic growth once they end, due to their interfering with the selective immunizing that would normally occur of individuals who are liable to pass the disease onto more people than average.

        Yes; it appears to be another harmful side effect of imposing lockdowns, closing schools, etc.

        However, it looks like herd immunity may well have been achieved in some major cities (e.g., London, New York), at least, before or despite lockdown.

      • > Translation: lockdowns and other government interventions may worsen the subsequent outlook for epidemic growth once they end, due to their interfering with the selective immunizing that would normally occur of individuals who are liable to pass the disease onto more people than average.

        Why is a translation needed? You basically just repeated what they wrote.

        Of course it’s all rather complicated – as the authors of that article spoke about in the other article I excerpted – and which you skipped over in your haste to “translate” what they said into basically what they said:

        –snip–

        Professor Istvan Kiss, from the School of Mathematical and Physical Sciences at the University of Sussex, said:

        “There is a real risk at this stage of the pandemic that people have been lulled into a false sense of security. In the absence of a vaccine, and with the virus still prevalent in the UK, people are still at great risk.

        “In our new paper, we have created models which examine how changes in contact networks during lockdown affect the herd immunity level induced by the first wave of the epidemic. We found that if you consider the way patterns of contact change during lockdown, then actually the level at which disease-induced ‘herd immunity’ is reached is higher than the most optimistic estimates we have seen. That’s because, with many of the most vulnerable people rightly protected, a greater proportion of other people need to become immune. Ideally this happens through vaccination rather than infection, of course.

        “In the models we studied, where ‘herd immunity’ was achieved at around 40 per cent when lockdown was implemented as a change in the probability of transmission, we found that if changes in contact patterns were used instead, then the level of herd immunity required to halt the spread of the virus increased by between 5 and 10 per cent – up to 45 or 50 per cent.”

        “Now that the UK has moved from a nation-wide lockdown to an expected series of local lockdowns, it is critical that those modelling the spread of the disease consider that personal networks are re-activating, and that they calculate how this could lead to individuals connecting to form clusters where super-spreading can occur.

        “For that reason, I urge the public to continue to be cautious and observe social distancing rules and take all possible measures to reduce the chance of infection and transmission. At this stage of the pandemic, there is a risk of complacency.

        “This pandemic still has a long way to run, and in the absence of a vaccine, we are nowhere near ‘herd immunity’. For example, even though London has seen some of the highest rates of Covid infections, with perhaps nine per cent of the population infected, the vast majority of Londoners are still susceptible to infection.”

        Dr Joel Miller from La Trobe University in Melbourne, Australia, who co-authored the study, said:

        “Disease-induced ‘herd immunity’ occurs at a lower level of infection than vaccine-induced herd immunity in part because the highly active people get infected early on. The disease is more efficient than the vaccine at reaching the ones who spread infection the most. When control measures shield these key individuals more than others, the ‘benefit’ of disease-induced ‘herd immunity’ is reduced.”

        –snip–

        And I have already linked to what Joel Miller had to say about the Gomes paper – Why did you have nothing to say about that?

        https://threadreaderapp.com/thread/1286934165967892480.html

      • J:

        “Disease-induced ‘herd immunity’ occurs at a lower level of infection than vaccine-induced herd immunity in part because the highly active people get infected early on. The disease is more efficient than the vaccine at reaching the ones who spread infection the most. When control measures shield these key individuals more than others, the ‘benefit’ of disease-induced ‘herd immunity’ is reduced.”

        Let’s make some progress. The goal is to get to herd immunity. The costs of not doing that are seen. How many trillions are we at now?

        When we hear of cases, and records cases, and unprecedented cases, that’s the network doing what it does. It is the virus living. It does it in nature. The whole planet does it and has been doing it for 100s of millions of years.

        The attempts to prevent herd immunity are like trying to stop water from flowing downhill. To stop the rivers from flowing. It’s a virus that moves through our population, period.

        It can be modeled as a network that takes the easiest and shortest paths first. Once the easy paths are gone, they’re used up and the virus is left with the longer paths. As long as enough longer passable paths remain, the virus will keep infecting people. The best way to get rid of these longer paths let the virus through them. That leaves the longest difficult paths. Where we hope the virus is finally contained. Delaying the longer paths (not the longest ones) from being used, leaves the most vulnerable longer in that state. Which is another cost.

        There is no workable answer that does not include herd immunity. All these unprecedented cases we see are the longer paths being used up. And then there’s the fact we are who we are. We’re tired of this. The Democrats will be folding soon as they try to jump out in front of their new position.

        The goal is to get to herd immunity. My goal in eight words. What’s your goal?

      • Joe - the non epidemiologist

        Nic Lewis wrote _ Translation: lockdowns and other government interventions may worsen the subsequent outlook for epidemic growth once they end, due to their interfering with the selective immunizing that would normally occur of individuals who are liable to pass the disease onto more people than average.

        My translation – – The human body and the human race immune system needs to constantly evolve. The lockdowns, etc retards and delays the needed development of the human immunity system to the long term deteriment of the human race. ( a variation of Nic’s translation)

      • Nic says:

        >Yes; it appears to be another harmful side effect of imposing lockdowns, closing schools, etc.

        However, it looks like herd immunity may well have been achieved in some major cities (e.g., London, New York), at least, before or despite lockdown.

        ————-

        Notice how this on the one hand ignores the impact of behavior and assumes that a putative herd immunity in NY results merely from infections, without consideration of changes in behaviors, but at the same time looks a behavior change as a threat to the maintenance of a putative herd immunity.

        Notice how it assumes that immunity occurred “despite” shelter in place orders – even as Nic argues that heterogeneity will lower the HIT – despite that obviously, the SIPs will potentially (effectively) remove many people from the chain of transmission.

        Notice how Nic effectively implies that a policy centered around protecting vulnerable people long-term is not practical and will result in disaster when they can no longer be protected, and yet has been promoting a policy option based on an unrealistic notion that you can have a ton of infected people walking around and still protect the vulnerable.

    • Rune Valaker

      I do not trust Tegnell, he has too much to defend, when he states:

      “…Sweden is actually more similar to the Netherlands and the UK than it is to other Scandinavian countries; he believes the Swedish counting system for deaths has been more stringent than elsewhere….” is this contrary to the actual observations.
      – the outbreak in Norway was greater per. per capita from the beginning of March until restrictions were introduced, Norway and Sweden had approximately the same number of cases per capita, then it exploded in Sweden and fell sharply in Norway (March 16: 1,146 in Sweden and 1,348 in Norway. April 1: 5,320 in Sweden and 4,877 in Norway, April 15: 12,432 in Sweden and 6,797 in Norway) Sweden has about twice as large a population as Norway
      – the counting system is identical for Norway, Sweden and Denmark
      – all three nations have large concentrations of immigrants in the largest cities living in cramped areas and where infection rates were high

      One of the biggest differences, in my opinion, was that Denmark and Norway closed pubs and that people practiced a large degree of voluntary isolation in the important weeks of March and April. To let health workers sit as usual and drink beer until 2 AM at the pubs and then go to work at the nursing homes the next day without any kind of protection and testing is to ask for trouble, it’s not more difficult than that. But for some reason Tegnell does not understand this.

      • “To let health workers sit as usual and drink beer until 2 AM at the pubs and then go to work at the nursing homes the next day without any kind of protection and testing is to ask for trouble…”
        So we have the whole response (applies to the everyone) and we have one driving response. Which are we talking about? Simply protecting the oldest people impacts the death count materially. We should be factoring out nursing home policy. I am sure it’s been done, but not by many pundits. I suppose you don’t distance everybody. You distance the old people from everybody. Old people are New Zealand. For their own good, they are exiled. Which is important. This is for your own good. Stop fighting it.

      • jungletrunks

        Ragnaar: “I suppose you don’t distance everybody. You distance the old people from everybody. ”

        That’s the crux. The elderly are at the most risk; representing the preponderance of deaths, and also hospitalizations. Besides the safe measures already in place; add extra rigid measures to protect the elderly, then open up the economy. This would be the fastest path to achieve herd immunity, and to minimize death and hospitalizations.

        Per CDC most recent data: “The overall cumulative COVID-19-associated hospitalization rate was 130.1 per 100,000; rates were highest in people 65 years of age and older (360.2 per 100,000)”

        I’ll add; It was evident early that the elderly were at the highest risk; it makes Cuomo’s insistence that nursing homes accept COVID patients a criminal issue, IMO. NY’s 32k COVID deaths weren’t wide ranging demographically, they were almost all elderly. Officials early on unequivocally knew the elderly were the most vulnerable.

      • Ragnaar –

        You think that sending kids back to school is a must.

        And you want to protect old people.

        How do you suggest protecting the millions of grandparent primary caregivers for school-aged children, and the millions more who live in the same household with their grandchildren but aren’t primary caregivers?

        Also, some 30% of teachers are over 50 and some 1/4 are at serious risk from COVID:

        https://www.kff.org/coronavirus-covid-19/issue-brief/how-many-teachers-are-at-risk-of-serious-illness-if-infected-with-coronavirus/

        This non-existent, fantasy plan for “protecting the vulnerable” is a cynical handwave – particularly coming from people who routinely call social safety net spending “theft” and a communist redistribution scheme.

      • > Simply protecting the oldest people…

        Thanks for that illustration of binary thinking.

      • trunks –

        I suspect that you don’t understand my views. Just becsuee I criticize Trump and Republicans doesn’t mean I have a binary view.

        Typical binary thinking on your part.

      • jungletrunks

        There’s building body of evidence that children are not only protected from COVID-19, but they don’t spread the disease. If good caution is added to the mix, masks, etc.; then evidence suggests this is the best of all demonstrably risky paths to take.

        What Science Says About Children, COVID-19 and School Reopenings
        https://www.factcheck.org/2020/07/what-science-says-about-children-covid-19-and-school-reopenings/

      • trunks –

        > There’s building body of evidence that children are not only protected from COVID-19, but they don’t spread the disease.

        This is the beginning of the first quarter-in particular when considering children of different ages:

        –snip–

        We detected COVID-19 in 11.8% of household contacts; rates were higher for contacts of children than adults. These risks largely reflected transmission in the middle of mitigation and therefore might characterize transmission dynamics during school closure (3). Higher household than nonhousehold detection might partly reflect transmission during social distancing, when family members largely stayed home except to perform essential tasks, possibly creating spread within the household. Clarifying the dynamics of SARS-CoV-2 transmission will help in determining control strategies at the individual and population levels. Studies have increasingly examined transmission within households. Earlier studies on the infection rate for symptomatic household contacts in the United States reported 10.5% (95% CI 2.9%–31.4%), significantly higher than for nonhousehold contacts (4). Recent reports on COVID-19 transmission have estimated higher secondary attack rates among household than nonhousehold contacts. Compiled reports from China, France, and Hong Kong estimated the secondary attack rates for close contacts to be 35% (95% CI 27%–44%) (5). The difference in attack rates for household contacts in different parts of the world may reflect variation in households and country-specific strategies on COVID-19 containment and mitigation. Given the high infection rate within families, personal protective measures should be used at home to reduce the risk for transmission (6). If feasible, cohort isolation outside of hospitals, such as in a Community Treatment Center, might be a viable option for managing household transmission (7).

        We also found the highest COVID-19 rate (18.6% [95% CI 14.0%–24.0%]) for household contacts of school-aged children and the lowest (5.3% [95% CI 1.3%–13.7%]) for household contacts of children 0–9 years in the middle of school closure. Despite closure of their schools, these children might have interacted with each other, although we do not have data to support that hypothesis. A contact survey in Wuhan and Shanghai, China, showed that school closure and social distancing significantly reduced the rate of COVID-19 among contacts of school-aged children (8). In the case of seasonal influenza epidemics, the highest secondary attack rate occurs among young children (9). Children who attend day care or school also are at high risk for transmitting respiratory viruses to household members (10). The low detection rate for household contacts of preschool-aged children in South Korea might be attributable to social distancing during these periods. Yet, a recent report from Shenzhen, China, showed that the proportion of infected children increased during the outbreak from 2% to 13%, suggesting the importance of school closure (11). Further evidence, including serologic studies, is needed to evaluate the public health benefit of school closure as part of mitigation strategies.
        –snip–

        https://wwwnc.cdc.gov/eid/article/26/10/20-1315_article

        The article lists limitations, but it is a very large study utilizing a robust system for contact tracing.

      • Also this:

        –snip–
        Our analyses suggest children younger than 5 years with mild to moderate COVID-19 have high amounts of SARS-CoV-2 viral RNA in their nasopharynx compared with older children and adults. Our study is limited to detection of viral nucleic acid, rather than infectious virus, although SARS-CoV-2 pediatric studies reported a correlation between higher nucleic acid levels and the ability to culture infectious virus.5 Thus, young children can potentially be important drivers of SARS-CoV-2 spread in the general population, as has been demonstrated with respiratory syncytial virus, where children with high viral loads are more likely to transmit.6 Behavioral habits of young children and close quarters in school and day care settings raise concern for SARS-CoV-2 amplification in this population as public health restrictions are eased. In addition to public health implications, this population will be important for targeting immunization efforts as SARS-CoV-2 vaccines become available.
        –snip–

        https://jamanetwork.com/journals/jamapediatrics/fullarticle/2768952

        I’ll also note re schools – obviously children are not the only people in schools. Opening schools means high connectivity among adults, among whom some 25% are at high risk for severs disease from covid.

        Keeping schools closed is obviously very problematic. But it doesn’t serve anyone well to adopt binary thinking to assume that opening schools isn’t high risk especially in communities where there’s a high rate of spread and/or high prevalence of people who are at high risk.

      • jungletrunks

        Josh, Generally you can find science that is contradictory to many of your own binarily couched claims, uh, snips. I don’t think there’s time for an IPCC type commission to officially validate propaganda, yet; though media certainly is giving it a go.

        As you continue with your frenzied google for brains searches looking for material to buttress your sense of relevance via volume; we would suggest you also keep an eye out for a men’s room icon where you may constructively unload your caché of digested diarrhea, consider this symbolically as the embodiment of a cumulatively necessary data dump, or in colloquial terms, pit stop, or hitting the head. As further comfort, you may find a good nugget that passes the charlatan smell test as your own body of knowledge, certainly intestinal fortitude.

      • trunks –

        Wow. Are you always scatalogically obsessed?

      • jungletrunks

        “Obsessed”, interesting choice of words. You’re the one using this site as a dump, Josh. We would appreciate it if you would at least wipe yourself for gods sake.

      • trunks –

        > We would appreciate it if you would at least wipe yourself for gods sake.

        Still going with the scatalogically stuff, eh?

        Look, you seem like a nice enough fella, but I’d prefer if you keep your fantasies about me in the bathroom to yourself.

      • “Also, some 30% of teachers are over 50 ”

        Retire them so they can keep themselves out of the way, which then frees up jobs for younger people to move into – and for those without work at the younger end to move into the workforce, kickstarting their adult lives.

        It’s a win all round. It’s pretty clear from the Covid response that a “dependency ratio” calculated using neoliberal fixed amount of money thinking isn’t correct. We can clearly maintain far more people who are retired in real terms.

        Let the young work and go to school. Let older people keep out of the way as they feel appropriate. And other than that let the thing take its course.

      • Neil, if you live in a state that is not yet under left loon one party rule, don’t let it happen. The left loon public school indoctrinators union will be running the show and they won’t go back to work, until their demands are met. And you still have to pay them:

        https://www.dailynews.com/2020/07/14/the-hubris-of-the-teachers-unions-could-backfire/

        See how fat and smug they look knowing that their political clout/bribery keeps them safe from the burdens of properly educating our youth. And when they retire with an undeserved lifetime free ride pension, they haunt blogs where decent people want to have discussions without being constantly bombarded by smarmy little left loon propagandists.

        MAGA 2020! Clean them out.

      • Joe- the non epidemiologist

        Joshua’s comment – “Also, some 30% of teachers are over 50 and some 1/4 are at serious risk from COVID:”

        A large pool of the teachers dont want to go back to work since
        1) they believe the government should protect them from the dangers of life
        2) and get paid with taxpayer’s money at the same time.

      • Even Sweden shut down secondary schools and had to shut down other schools because of staff shortages and deaths due to the virus. Here in the US MLB with a huge amount of resources is struggling to field teams and play games because of positive tests.

        And, of course, on the first day of school in Indiana, parents sent their child with a pending test to school. The test came back positive.

        Now

        “Officials examined seating charts, and students who had been within 6 feet of their infected classmate for more than 15 minutes won’t be allowed to return to school, Olin told CNN. Their families received phone calls informing them their children must stay out of school for 14 days, he said.”

        Students at Indiana school back on campus after classmate sent home with positive Covid-19 test

        https://www.cnn.com/2020/08/03/us/indiana-student-covid-positive-school/index.html

      • Dear Parent/Guardian:

        Congratulations! Your child has been selected to participate in an experiment on herd immunity for COVID-19. We anticipate that your child will only become slightly ill, probably nothing more than a slight fever and cough; however, be sure to let us know if your child is unable to breath, is dizzy, or has to go to the emergency room so we can remove his stats from our experiment. Do not anticipate any assistance with medical bills. You may opt out of this honor but don’t expect any help from us in educating your kid.

        Thanks,
        Your local school board

      • Joe - the non epidemiologist

        James Cross’s comment – “Congratulations! Your child has been selected to participate in an experiment on herd immunity for COVID-19.”

        I presume you are aware that the human body and the human race needs to constantly update its natural immune system in order to survive. the current approach only retards the needed development of the human immune system. With the current approach, each succeeding virus will become more deadly.

      • Dear Parent/Guardian:

        Since your child is fortunate enough to attend a rural school in a Red district, we know that you are not some feinting daisy. We also realize you have bills to pay and you have a job being productive. So we are happy to let you know, we are ready to teach your child history, math and English this year the same as last school year. Keep up the good work.

        Your proud school district

      • Danger is minimal to students and teachers. CDC says reopen. Pediatricians say re-open. Child psychologists say reopen. POTUS Trump says reopen and the left loons pitched a fit.

        Teachers are really smart, just ask them. So they can social distance and wear a mask, no problem. They are robbing the taxpayers so the mask is appropriate, anyway. They shouldn’t be allowed within six feet of students, anyway.

        https://www.pasteur.fr/en/press-area/press-documents/covid-19-primary-schools-no-significant-transmission-among-children-students-teachers

        “In late April 2020, scientists at the Institut Pasteur, with the support of the Hauts-de-France Regional Health Agency and the Amiens Education Authority, carried out an epidemiological survey on 1,340 people linked to primary schools in Crépy-en-Valois, in the Oise department. Thanks to the cooperation of the people of Crépy-en-Valois, the survey, which made use of serological tests developed by the Institut Pasteur, revealed that the proportion of primary school students infected by the novel coronavirus was 8.8%. Based on some cases of infection detected in the students before the schools closed, it appears that the children did not spread the infection to other students or to teachers or other staff at the schools. The results were published online on pasteur.fr on June 23, 2020.​”

    • Tergnell clearly has an agenda and a selective attitude towards uncertainty:

      –snip–
      His belief is that, in the final account, the Infection Fatality Rate will be similar to the flu: “somewhere between 0.1% and 0.5% of people getting infected, maybe … And that is not radically different to what we see with the yearly flu.”
      –snip–

      First, that statement flatly ignores the potential for significant differences in prevalence of serious sequelae from COVID compared to the flu – which is kind of weird coming from the head epidemiologist in Sweden.

      Second, it ignores the differences in how the IFR is calculated for the flu and covid.

      –snip–

      This apparent equivalence of deaths from COVID-19 and seasonal influenza does not match frontline clinical conditions, especially in some hot zones of the pandemic where ventilators have been in short supply and many hospitals have been stretched beyond their limits. The demand on hospital resources during the COVID-19 crisis has not occurred before in the US, even during the worst of influenza seasons. Yet public officials continue to draw comparisons between seasonal influenza and SARS-CoV-2 mortality, often in an attempt to minimize the effects of the unfolding pandemic.

      The root of such incorrect comparisons may be a knowledge gap regarding how seasonal influenza and COVID-19 data are publicly reported. The CDC, like many similar disease control agencies around the world, presents seasonal influenza morbidity and mortality not as raw counts but as calculated estimates based on submitted International Classification of Diseases codes.2 Between 2013-2014 and 2018-2019, the reported yearly estimated influenza deaths ranged from 23 000 to 61 000.3 Over that same time period, however, the number of counted influenza deaths was between 3448 and 15 620 yearly.4 On average, the CDC estimates of deaths attributed to influenza were nearly 6 times greater than its reported counted numbers. Conversely, COVID-19 fatalities are at present being counted and reported directly, not estimated. As a result, the more valid comparison would be to compare weekly counts of COVID-19 deaths to weekly counts of seasonal influenza deaths.
      –snip–

      https://www.healthline.com/health-news/why-covid-19-isnt-the-flu

      More on why the comparison is strange coming from Sweden’s head epidemiologist:

      –snip–
      Experts say there are a number of reasons why COVID-19 is a more serious illness than the seasonal flu.
      They point out there’s no vaccine yet for COVID-19 and community-wide immunity hasn’t built up.
      COVID-19 is also more infectious than the flu and has a higher death rate.
      COVID-19 also has a higher rate of hospitalizations.
      –snip–

      https://www.healthline.com/health-news/why-covid-19-isnt-the-flu

      • Joshua

        you mention schools being not only used by generally non infectious children, but more vulnerable adults, from teachers to cleaners, lunch servers to janitors.

        I made a suggestion back in March that many schools could readily teach outdoors in the spring, summer and autumn, using a series of marquees.

        I don’t know if they are the same over there, but here there is a tradition of sturdy and heavy canvas marquees which have a high apex and to which the sides can be rolled up or down as far as you like, thereby providing good ventilation and protection against the elements.

        maybe fans would be needed in your hotter states.

        however the time is passing as obviously it becomes more problematic as autumn approaches, but it could have provided 5 or 6 months of a useful and stimulating teaching space.

        That all assumes the school has a playing field but at present there are many halls also available of various sizes and whilst a hassle to spread classes around its better than children missing six months of education.,

        tonyb

    • https://www.healthline.com/health-news/why-covid-19-isnt-the-flu

      More on why the comparison is strange coming from Sweden’s head epidemiologist:

      –snip–
      Experts say there are a number of reasons why COVID-19 is a more serious illness than the seasonal flu.
      They point out there’s no vaccine yet for COVID-19 and community-wide immunity hasn’t built up.
      COVID-19 is also more infectious than the flu and has a higher death rate.
      COVID-19 also has a higher rate of hospitalizations.
      –snip–

      https://www.healthline.com/health-news/why-covid-19-isnt-the-flu

    • Nic: It would have been nice if the interviewer had asked some tougher questions: 1) Based on experience with influenza], “I personally believe that this is a disease we are going to have to learn to live with.” Influenza has never been brought under control because its polymerase lacks proof-reading and resistant strains evolve much more rapidly. And there are so many strains circulating, that the average flu shot (which has antigens for three strains) protects against about 50% of strains that are circulating in the average winter. Experts are hopeful that these problems won’t be nearly a serious with SARS-CoV-2, which has a proof-reading polymerase and only one strain to worry about. Influenza is like tackling SARS-CoV-1, SARS-CoV-2, MERS and the coronaviruses that cause the common cold at the same time. In the case of the Spanish flu, a vaccine against one strain of influenza could have saved many lives in 1919 and 1920. 2) Sweden is more like the Netherlands than its Nordic neighbors???? According to my calculations, cases were doubling every 4.5-5.0 days in March, much slower than in many other countries (2-3 days). I don’t know if the Swedes have better hygiene, less crowded public buildings and transportation, or better indoor ventilation, but transmission was less efficient there. It would be interesting to know if seasonal influenza is lower there too. 3) Mask are likely to spread infections because they will make sick people more likely to interact with others???? 4) No questions asked about success in controlling the spread of coronavirus in China, SK and Taiwan????? 5) No questions about how much safer it is in other Nordic countries than Sweden today. 6) How can the safety of nursing homes in Sweden be as good as in other European countries, when the staff that works in those facilities spends their non-working hours living in the middle of a significantly worse pandemic? 7) No questions about his public apology???

      The 42% seropositivity (without reaching herd immunity according to the speaker) in Mosher’s link is in a very isolated inbred community in the Alps (one of the questions asked near the end). There could be less variation in susceptibility and transmissibility in this community than normal.

      • Franktoo: fair points, however I think it is probably unrealistic to expect a tiny online TV channel to ask tough questions of high profile interviewees, who have little to gain from agreeing to be interviewed. I think the most one can expect from such an interview is to extract the interviewee’s answers to a wide range of questions. Other people can then point out any issues with their answers, as you have done.

        I will respond on a few of your points:

        1) I don’t actually think you are quite right about flu. I attended a lecture by Prof Gupta a couple of years or so ago at which she explained that the influenza virus’s ability to evade the immune system was actually limited to 5 or so variants in one critical area, so it should be possible to produce a vaccine that was effective against all strains of flu. Her group at Oxford Uni has now developed such a vaccine and recently signed a deal to commerialise it.

        Also, so far SARS-Cov-2 has not been under that much selective pressure. Once it comes under such pressure, from a vaccine, it may mutate much more.

        2) I agree that there are some differences, but I’m not sure that they are as large as you suggest. According to ECDC data, and restricting calculations to when total weekly cases exceeded 100, in the first few days the week-on-week growth in weekly cases was broadly in the 4 to 5 range for Sweden, Norway, the Netherlands and Ireland. That equates to doubling about every 3 days. After that the growth rate declined substantially in all four countries.

        3) What Tegnell suggests is possible. I note that another country with a level-headed government (the Netherlands) has recently decided not to recommend mask wearing by the public. Nor does Norway, I believe.

        5) I for one would feel quite safe enough in Sweden today.

        6) The overall death rate in Sweden is now down to its 5 year average, so I don’t think excess deaths in nursing homes can be a significant problem any more.

        I agree with your point that an isolated, inbred community can be expected to have less population heterogeneity than a country as a whole and that the HIT would therefore by substantialy higher for it.

      • Joe - the non epidemiologist

        “3) What Tegnell suggests is possible. I note that another country with a level-headed government (the Netherlands) has recently decided not to recommend mask wearing by the public. Nor does Norway, I believe.”

        Nic

        I am interested on your thoughts on mask wearing excluding the medical/clinical setting and except in the tightly compacted spaces (mass transit, etc)
        Aerosol v droplet transmission

        Thanks

      • > I think it is probably unrealistic to expect a tiny online TV channel to ask tough questions of high profile interviewees

        Wow.

      • Thanks for the reply, Nic.

        Masks: I’m pretty mechanical in the thinking about masks. Any mask should be able to block an significant number of droplets. The N95 masks used in hospitals clearly protect against aerosols, but surgical and other masks leak around the edges and possibly 50% of aerosols can pass through (but technology should be improving). I suspect superspreaders produce large amounts of aerosolized virus. Fortunately, a single virus doesn’t produce an infection. In the case of influenza, about a 1000 viruses are needed. They might come in one large droplet or hundreds of aerosol particles, so a mask can increase the amount of time you can be exposed to infectious aerosols without becoming infected. As long as you aren’t stupid enough to infect yourself by transferring material deposited on the outside of the mask with your hands, masks might reduce your chances of infection by at least a factor of 2 and possibly more. From the pandemic point of view, even a 20% reduction in transmission makes a big difference over a month or longer.

        I started looking into some of the studies in a meta-analysis claiming masks aren’t effective. In one study, the benefits were statistically significant if the amount of time the mask was worn was considered as a factor, but otherwise were not significant. The meta-analysis which incorporated the results of this paper used the non-significant information in an intent-to-treat analysis: The goals was to see if there were a benefit to a certain POPULATION. Half the people in that population didn’t wear the mask regularly. Therefore masks didn’t produce a statistically significant benefit for this population. Which is the technically correct answer, because dozens of other qualifiers could also be used to select a subpopulation where the intervention worked. (Mask work for men, but not women because their hair gets in the way.) The more useful answer is that masks provided some protection to those who wore them, but compliance was a big problem. Today compliance might be less of an issue, especially if better information were available.

        Sweden: I’m glad you would “feel safe in Sweden today”, but that isn’t the real issue. Would you want to live in Sweden for the next year using June’s data with about 10 new cases/day/100,000? If the infected person were capable of transmitting the virus for 10 days and testing was only picking up 1 in 10 infected people, then 1 out of every hundred people you are in contact with could be infected. If you are in contact with only 3 outsiders a day for a month, one of them will be capable of infecting you. And since I have a 90+ year old mother in law who needs help daily, I wouldn’t feel safe in Sweden or anywhere else either. I can be asymptomatic and infect her. I don’t expect the government to destroy our economy or limit your personal freedom to protect my mother-in-law, but when you stop and think about it, a lot of people are in necessary contact with vulnerable people. And after needing to visit the emergency room for influenza last winter, perhaps I’m “graduating” into the vulnerable population myself. One hit on an inhaler and I felt sooooo much better.

        I hope you are right about a coming universal flu vaccine, but it isn’t here yet. The CDC says the standard vaccine reduces your chance of getting influenza by about 50%. I don’t know if this is because: a) the vaccine provides protection against only 50% of the influenza viruses circulating in an average year or b) only 50% of patients develop enough antibodies to protect against infection or c) some combination of a) and b). I’m under the impression that a) is the major problem, despite the standard vaccination consisting of four different inactivated flu strains. The information shows that the CDC is constantly refining the mix of inactivated viruses used in vaccine because the influenza polymerase doesn’t have a proof-reading subunit and the viral mutates rapidly. Coronaviral polymerases have a proof-reading subunit and mutate much more slowly.

        2019-20 vaccine:
        The A(H1N1)pdm09 vaccine component was updated from an A/Michigan/45/2015 (H1N1)pdm09-like virus to an A/Brisbane/02/2018 (H1N1)pdm09-like virus.
        The A(H3N2) vaccine component was updated from an A/Singapore/INFIMH-16-0019/2016 A(H3N2)-like virus to an A/Kansas/14/2017 (H3N2)-like virus.
        Both B/Victoria and B/Yamagata virus components from the 2018-2019 flu vaccine remain the same for the 2019-2020 flu vaccine.

        2018-19 vaccine:
        Flu vaccines have been updated to better match circulating viruses [the B/Victoria component was changed and the influenza A(H3N2) component was updated].

        2017-18
        The overall vaccine effectiveness (VE) of the 2017-2018 flu vaccine against both influenza A and B viruses is estimated to be 40%. This means the flu vaccine reduced a person’s overall risk of having to seek medical care at a doctor’s office for flu illness by 40%. Protection by virus type and subtype was: 25% against A(H3N2), 65% against A(H1N1) and 49% against influenza B viruses.

        2016-17 Vaccine
        A/California/7/2009 (H1N1)pdm09-like virus,
        A/Hong Kong/4801/2014 (H3N2)-like virus and a
        B/Brisbane/60/2008-like virus (B/Victoria lineage).
        some also got: B/Phuket/3073/2013-like virus (B/Yamagata lineage).

        2014-2015 Vaccine:
        an A/California/7/2009 (H1N1)pdm09-like virus
        an A/Texas/50/2012 (H3N2)-like virus
        a B/Massachusetts/2/2012-like virus.
        some also got B/Brisbane/60/2008-like virus.

        2006-07 Vaccine:
        The influenza A (H1) component of the 2006-07 flu vaccine was well matched to circulating influenza A (H1) viruses, which accounted for the majority of influenza viruses tested by CDC. There are two groups of influenza B viruses currently circulating, which are known as the B/Yamagata lineage viruses and the B/Victoria lineage viruses. The 2006-07 vaccine contained a B virus from the B/Victoria lineage and 77% of the viruses tested by CDC were from the B/Victoria lineage. Fifty percent of the influenza B viruses characterized as belonging to the B/Victoria lineage were well matched to the influenza B component of the 2006-07 flu vaccine. In the early months of the season, the majority of influenza A (H3) viruses circulating in the country matched the influenza A (H3N2) component of the 2006–07 vaccine. However, the proportion of H3N2 viruses similar to the H3N2 vaccine component declined as the season progressed. Overall for the 2006-07 season, 24 percent of H3N2 viruses were well matched to the vaccine strain.

      • “Fortunately, a single virus doesn’t produce an infection. In the case of influenza, about a 1000 viruses are needed. They might come in one large droplet or hundreds of aerosol particles, so a mask can increase the amount of time you can be exposed to infectious aerosols without becoming infected.”

        I fear that SARS-CoV-2 requires fewer copies of the virus to produce an infection than the influenza virus. A new article (https://doi.org/10.1101/2020.07.27.20162362) suggests no more than ~300 at most. But that estimate seems, if I’ve read it right, to have been arrived at by assuming that 100% of the exhaled breath of one infected person over 2 1/2 hours – containing ~330 virus copies, was inhaled by each infected person at close quarters at a choir event. That seems to be impossible, as 52 out of 61 people were infected. It looks to me that, if 330 exhaled viruses infected 52 people, only a few viruses are needed to infect most people.

        The study also estimates that droplet sizes of 2.5 – 19 microns are most important for infection, and it explains why in high humidity infectivity is far lower. The methods used are quite sophisticated and include used of Large Eddy Simulation, a technique used in simulating cloud etc. behaviour in very high resolution climate models.

      • Joe
        “I am interested on your thoughts on mask wearing excluding the medical/clinical setting and except in the tightly compacted spaces (mass transit, etc)
        Aerosol v droplet transmission”

        Virus-containing particles in the 2.5-19 micron range appear to be most infectious (https://doi.org/10.1101/2020.07.27.20162362). The aerosol – droplet division is not really binary, but I have seen 50 microns suggested.

        Other evidence suggests mainly aerosol transmission: this recent paper (https://www.medrxiv.org/content/10.1101/2020.07.13.20152819v1) found that being taller was associated with greater infection risk, whereas with larger particles being more affected by gravity one would expect droplet transmission to be greater for shorter people.

        I’m not a mask expert, but I would expect cloth masks not to be very effective against aerosol transmission. Certainly, I see little advantage, and some disadvantages, in wearing masks in the open air, where transmission appears to be very low. Nor am I convinced that they offer much benefit in uncrowded shops, etc., at least where the exposure time is fairly limited.

      • >I’m not a mask expert, but I would expect cloth masks not to be very effective against aerosol transmission.

        Ah, not “very effective”

        Something that is only partially effective on a society-wide scale can have a significant impact.

        There seems to be a consensus among people who *are* expert – who actually study the mechanics of how viruses spread – that wearing masks might well provide a significant benefit even if the case isn’t dispositive.

        This might be true regardless of whether non-N95 masks are effective against the inhalation of small, aerosolized particles.

        There are videos easily available that show that wearing masks affects airflow (reducing the distance of larger particle transmission as well as reducing smaller particle aerosol transmission) when people are breathing, speaking, coughing or sneezing, and I’ve also read some stuff on the potential benefits from masks increasing the moisture levels behind the masks); thus it’s interesting to see people who read a few articles on micron size and then consider themselves sufficiently qualified to offer their advice when asked to do so. Such is the power of motivated reasoning.

      • Frank –

        You might find this interesting:

        https://twitter.com/richardneher/status/1289627859854606339

      • As usual Josh falls for the pseudo-science of colorful fluid dynamics. The literature shows no benefit of masks in a community setting. There is a benefit for health care workers even though compliance is a problem due to side effects like headaches.

      • I don’t see any rationale or usefulness in arguing against or refusing to wear masks in public. They work to some extent. Period:

        https://www.youtube.com/watch?v=XG1Du-GOJs0

        If link doesn’t work, it’s titled:

        COVID-19 Update 16: Effectiveness of surgical masks for prevention

        There are numerous videos of tests of folks talking, coughing, singing that in laser light show the effects on projected nastiness with and without various types of masks. I posted a video of the NYC respiratory doc working day and night in the busiest COVID hospital in the country, who said wear the mask in public, if for no other reason than it keeps you from touching your face. When you get home carefully remove mask, wash hands and you reduce your chances of croaking.

      • > There is a benefit for health care workers…

        Strange how the most simple of concepts escape some people repeatedly if they are appropriately “motivated.”

        The point of a health care worker wearing a mask is to prevent the mask-wearer from getting infected. So the benefit to them is basically irrelevant to the question of the benefit from the general public wearing masks.

        The purpose of the general public wearing masks is to reduce, on a society-wide scale, the spread of the virus through larger particles traveling longer distances if people aren’t right next to each other, or reducing to some extent the # and distance tracked of aeeosoized particles circulating in places where people might encounter them.

        If a mask obstructs airflow to some extent, it could reduce the distance larger and smaller particles travel, and even the number that escape beyond the mask. Increasing humidity behind the mask might have a similar benefit

        The related evidence doesn’t seem, as near as I can tell, definitive. That’s life. Sometimes you have to make decisions in the light of imperfect evidence.

        They key is to not generalize from imperfect evidence as we see here:

        > The literature shows no benefit of masks in a community setting.

        Yeah – and Florida has vastly fewer infections vastly more testing than NY.

        Remarkable.

    • Nic: Awesome roughly 5-fold drop in new infections in Sweden in July accompanied by significant drop in positive rate (2-fold?). More than negated rise 2-fold rise in June – which I wrongly earlier said represented the Swedish pandemic going out of control in earlier comments.

      I would guess this drop has been too fast to have been caused by approaching herd immunity, but we really can’t say without a new serology survey. If the age of those with new infections has dropped substantially, perhaps the fraction of silent infections began rising in June (or earlier) because the pandemic has been recently propagating among younger healthier people less likely to get tested.

      Did anything happen around the end of June in Sweden to cause a change in behavior or public policy?

      • I’m not aware of any specific change around the end of June in the testing regime or other policy in Sweden. But, as Tegnell said in the interview I linked to, there is huge regional variability in Sweden. You can see that in plots I showed in my article https://judithcurry.com/2020/06/28/the-progress-of-the-covid-19-epidemic-in-sweden-an-analysis/.

        I think that dying-down of outbreaks in a few regions (Jönköping, Stockholm, Västra Götaland) may be the main explanation. Those outbreaks were probably in localities where herd immunity had not been achieved (but now has been, presumbably). Even after a country has achieved herd immunity on an overall basis, localised outbreaks can still occur, but they will not spread across the country.

  41. I don’t believe this has been linked here perviously:

    –snip–
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    REPORT
    Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period
    View ORCID ProfileStephen M. Kissler1,*, View ORCID ProfileChristine Tedijanto2,*, View ORCID ProfileEdward Goldstein2, View ORCID ProfileYonatan H. Grad1,†,‡, View ORCID ProfileMarc Lipsitch2,†,‡
    See all authors and affiliations

    Science 22 May 2020:
    Vol. 368, Issue 6493, pp. 860-868
    DOI: 10.1126/science.abb5793
    Article
    Figures & Data
    Info & Metrics
    eLetters
    PDF
    What happens next?
    Four months into the severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2) outbreak, we still do not know enough about postrecovery immune protection and environmental and seasonal influences on transmission to predict transmission dynamics accurately. However, we do know that humans are seasonally afflicted by other, less severe coronaviruses. Kissler et al. used existing data to build a deterministic model of multiyear interactions between existing coronaviruses, with a focus on the United States, and used this to project the potential epidemic dynamics and pressures on critical care capacity over the next 5 years. The long-term dynamics of SARS-CoV-2 strongly depends on immune responses and immune cross-reactions between the coronaviruses, as well as the timing of introduction of the new virus into a population. One scenario is that a resurgence in SARS-CoV-2 could occur as far into the future as 2025.

    Science, this issue p. 860

    Abstract
    It is urgent to understand the future of severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2) transmission. We used estimates of seasonality, immunity, and cross-immunity for human coronavirus OC43 (HCoV-OC43) and HCoV-HKU1 using time-series data from the United States to inform a model of SARS-CoV-2 transmission. We projected that recurrent wintertime outbreaks of SARS-CoV-2 will probably occur after the initial, most severe pandemic wave. Absent other interventions, a key metric for the success of social distancing is whether critical care capacities are exceeded. To avoid this, prolonged or intermittent social distancing may be necessary into 2022. Additional interventions, including expanded critical care capacity and an effective therapeutic, would improve the success of intermittent distancing and hasten the acquisition of herd immunity. Longitudinal serological studies are urgently needed to determine the extent and duration of immunity to SARS-CoV-2. Even in the event of apparent elimination, SARS-CoV-2 surveillance should be maintained because a resurgence in contagion could be possible as late as 2024.
    –snip–

    https://science.sciencemag.org/content/368/6493/860

    • Oops. I’ll try that again:

      –snip–

      Abstract
      It is urgent to understand the future of severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2) transmission. We used estimates of seasonality, immunity, and cross-immunity for human coronavirus OC43 (HCoV-OC43) and HCoV-HKU1 using time-series data from the United States to inform a model of SARS-CoV-2 transmission. We projected that recurrent wintertime outbreaks of SARS-CoV-2 will probably occur after the initial, most severe pandemic wave. Absent other interventions, a key metric for the success of social distancing is whether critical care capacities are exceeded. To avoid this, prolonged or intermittent social distancing may be necessary into 2022. Additional interventions, including expanded critical care capacity and an effective therapeutic, would improve the success of intermittent distancing and hasten the acquisition of herd immunity. Longitudinal serological studies are urgently needed to determine the extent and duration of immunity to SARS-CoV-2. Even in the event of apparent elimination, SARS-CoV-2 surveillance should be maintained because a resurgence in contagion could be possible as late as 2024.

      –snip–

      https://science.sciencemag.org/content/368/6493/860

      • Here are some other relevant points that Kissler et al. make, which you don’t mention:

        “The authors are aware that prolonged distancing, even if intermittent, is likely to have profoundly negative economic, social, and educational consequences.
        Our goal in modeling such policies is not to endorse them, but rather to identify likely trajectories of the pandemic under alternative approaches, to identify complementary interventions such as expanding ICU capacity and identifying treatments to reduce ICU demand, and to spur innovative ideas (55) to expand the list of options to bring the pandemic under long-term control.”

      • “Absent other interventions, a key metric for the success of social distancing is whether critical care capacities are exceeded. To avoid this, prolonged or intermittent social distancing may be necessary into 2022.”
        If critical care capacities are not exceeded, reduce social distancing. But cases. Unprecedented cases. Many hot spots. Very bad.

      • > Here are some other relevant points that Kissler et al. make, which you don’t mention:

        Yes, it’s complicated. It’s a balancing act. I’m glad that we agree, and that a blanket argument that shekte in place orders = bad and a restriction of “basic freedoms” is uselessly simplistic.

  42. In ongoing covid19 statistics, cases have dissociated from deaths.
    Here in Belgium as an example, the peak of daily cases in April was followed by the peak in daily deaths less than a week later. They followed eachother closely. The same in most countries.

    https://ourworldindata.org/coronavirus-data

    However now, after reaching a minimum one month ago (end June) daily “cases” have increased an order of magnitude from about 50 to 500 per day, and rising.
    However over the same period, daily deaths remain unchanged at less than 10 per day – no increase.
    Something has changed. It might be reporting.
    It might also be the new strain of covid19, D614G, causing this.
    It is more infective – higher r0 – but less severe in health outcome.

    • Phil –

      >In ongoing covid19 statistics, cases have dissociated from deaths.

      I think your statement is a bit overly-broad

      In the US it seems there has been a sharp increase in deaths even it isn’t as sharp as the increase in cases.

      Not surprising that armchair epidemiologists that like to pontificate here were dead wrong when the predicted that the “pandemic is over” and that ejfee would be no increase in deaths because fmdhenknxrese in cases was only due to more testing and/or younger/more asymptomatic people being tested.

      That said, those factors do seem to be in play as well as improved treatment to reduce fatality rate. Perhaps similar phenomena in Belgium?

      • Yes in the US the uptick in cases started a month or so before that in Belgium. And deaths are rising in the US also after 2-3 week lag from cases. This probably lies ahead for Belgium and UK, i.e. will start about now.

  43. I’m planning to travel (alone) from Belgium to England in about a week’s time, to represent our family at my brother’s wedding. At present this is at least allowed (although there’s a chance UK might quarantine arrivals from Belgium). Any comments on whether this is a good idea or not?

    • Philip

      How do you intend to travel and where is the funeral to be held? Are you needing hotel accommodation or have you family that can put you up as presumably you will be away at least one night?

      Tonyb

      Tonyb

      As you say there is a lot of talk about putting Belgium into our quarantine list.

  44. The warm embrace of government taking care of you. It’s been tried. Didn’t work. You weren’t happy and just complained all the time.

  45. https://i.dailymail.co.uk/1s/2020/07/29/12/31325488-8571789-image-a-19_1596020821217.jpg

    Outdone by Sweden. Sweden made itself great again. Not us. We have riots and tear down statues. And if that’s not enough, Biden will save us.

  46. Stephen Anthony

    Nic Lewis,
    Good to see that so far the real world is reflecting your and Gomes predictions. I recently found a criticism of Gomes work and now cannot find the link. The criticism essentially boiled down to “Why doesn’t earlier herd immunity work for the flu?”. To which my initial reaction was this pandemic is not the flu. My later reaction was I don’t actually know that your model doesn’t work for the flu.
    Is there any reason do you think that flu would model differently? Of course Ro would be different, possibly no asymptomatic flu cases too but roughly similar to Covid-19 in many ways.

    • Stephen Anthony,
      There are significant differences between COVID-19 and the flu, as well as similarities.
      It appears likely that a substantially higher proportion of the population have partial immunity to COVID-19 by virue of previous exposure to other coronaviruses than have such immunity to the influenza virus most prevalent at the time of an epidemic – particularly when that is the first time in living memory that variant has circulated.
      Also, SFAIK most flu transmission is by aerosols, which remain in the air for a long time, with the virus remaining viable for up to a few weeks. That being so, heterogeneity in social connectivity may be a less important factor for transmission than for COVID-19.
      Also, the high pre-symptomatic infectivity of SARS-COV-2 may make heterogeneity in social connectivity a much more powerful factor in reducing the HIT. Once people feel ill, they are presumably much less likely to go to social functions.
      These factors would result the HIT being reduced substantially less by population heterogeneity.

      • Stephen Anthony

        Thanks a lot for your reply. I can see now that a long lived virus outside the host (such as flu) would create different problems for your & Gomes et al’s model.
        The context of the lost article was a male epidemiologist being interviewed and it didn’t give a lot of space for Gomes et al’s work. He seemed more concerned with the fact that her paper was not peer reviewed, In the midst of a pandemic where lives will be lost, his attitude seemed to be as useful as a chocolate teapot.

  47. I favor the let it burn forest policies. Fire suppression is an example of trying to beat nature. At low resolution, this is the same thing. We can have a bunch of old trees, and we can clean up all the brush. It costs a lot though, and few want to pay for it.

    We have to put out all the fires and we have these heroic people to do so.

    A Ponderosa pine forest if left alone will accumulate brush, that then burns without damaging the mature trees. You can walk close to the fire and it’s pretty safe to do so in most cases. I know this because some knowledgeable professor in Montana said so. These fires clear the brush. Accumulated brush when on fire can reach the crown, which does kill the mature trees.

    What are the chances that fire will go away? And the forest can live happily ever after? Just as the virus will not go away, as much as we wish it would. Or we have a secret weapon in the works from our able science people.

    Everyone is a fire fighter. I’ll shame if you aren’t. Every hour of the day, you are a fire fighter. We are a nation of fire fighters. Our children are fire fighters.

    The virus makes us do this. It’s smarter than us.

  48. Clarification: Accumulated brush when on fire can reach the crown, which does kill the mature trees.
    Should read:
    Excessive accumulated brush resulting from fire suppression when on fire can reach the crown, which does kill the mature trees.
    —————-
    Left alone, a Ponderosa pine forest rarely has crown fires.

  49. –snip–
    Sanjay Gupta and Andrea Kane just ran an extensive front-page CNN article reporting that some residual T-cell immune responses cross-react with SARS-Cov-19, perhaps enough to provide many people with some protection. The article seemed straightforward and reasonable enough until it got to this strangely erroneous statement:

    For herd immunity, if indeed we have a very large proportion of the population already being immune in one way or another, through these cellular responses, they can count towards the pool that you need to establish herd immunity. If you have 50% already in a way immune, because of these existing immune responses, then you don’t need 60 to 80%, you need 10 to 30%—you have covered the 50% already.

    The source was Prof. John Ioannidis of Stanford Medical School, who since at least March has been making assertions (often challenged by statisticians and epidemiologists) minimizing the dangers of Covid-19.

    What’s wrong with his analysis? Let’s look at a very simple and extreme case, just to clarify the logic of the problem, ignoring for now the practical issues, such as that immunity is only partial. Suppose 50% of the population is completely protected without infection, the other 50% is completely vulnerable, the initial reproductive number R0 (the average number of persons infected by each case as the epidemic begins) in a completely vulnerable population would be 4, infection always confers immunity, and our actual population is fully mixed. Then, since 50% of the people encountered by an infectious person would be immune, the R0 in our population would be 50% of 4, i.e. 2 (which is within the range of initial R0 estimates for Covid-19 in whole populations).

    From that estimated R0 of 2, the standard estimate of the herd immunity threshold would be (1-1/R0) = 50%. The Ioannidis analysis would then say that, since 50% of the population is already immune, you should correct that estimate by subtracting that 50% from the estimated 50% herd immunity threshold. So you need to achieve only 0% more population immunity to reach herd immunity, meaning you start off with herd immunity and there isn’t an epidemic. With a slightly lower R0, Ioannidis’s analysis would give a negative herd immunity threshold.

    That’s mathematically wrong. We got the R0=2 from watching the initial exponential growth in a mixed population, so there is an epidemic. Furthermore, within the vulnerable fraction of the population, the herd immunity threshold will only be achieved when 50% of that subpopulation has been infected. That 50% represents an additional 25% of the whole population beyond those who were immune to start. That’s a lot better than the 50% from applying R0=2 to the whole population, but it’s not 0%. With a R0=5 in the subpopulation, we get R0=2.5 in the whole population, and herd immunity requires 60% immunity in the subpopulation, which translates to 30% additional immune in the whole population, not 10% as in Ioannidis’s analysis. And so on.

    In real life, things get a lot more complicated, among other things because of partial mixing of populations with a spectrum of susceptibilities, and because the reproductive number declines as preventive actions are taken and the disease spreads. But before dealing with those complications, one needs to develop equations that give sensible answers under simple assumptions
    –snip–

    https://statmodeling.stat.columbia.edu/2020/08/03/math-error-in-herd-immunity-calculation-from-cnn-epidemiology-expert/

    • This looks to be another invalid criticism. The original statement says nothing about calculating R0 and thus they appear to have assumed that R0 is known before the herd immunity threshold is calculated. The criticism is that pre-existing immunity will affect the calculation of the HIT, but its not a criticism of what they said. It’s about how to calculate R0. At best its an additional point which Ioannidis knows perfectly well as its obvious.

      • David –

        I suggest that you go over to Andrew’s and explain their error to them.

        LOL.

      • I tell you what. I’ll post your explanation for how they’re wrong for you. Then you can go over to back it up.

      • Here David –

        https://statmodeling.stat.columbia.edu/2020/08/03/math-error-in-herd-immunity-calculation-from-cnn-epidemiology-expert/#comment-1400206

        Because I know you’re shy and wouldn’t want to embarrass a “nothingburger” like Gelman, I went ahead and showed them your correction for you.

        I’m sure that Andrew and Michael Weissman and Sander Greenland will be deeply appreciative of your pointing out their error.

      • He posted your comment and your alleged name over there, dpy. He must not have your address and other personal information. Why Judith doesn’t banish this little slimy twerp is a mystery. What is the matter with you,Judith? Is this OK? He’s done it here, also.

      • Don –

        What an excitable little fella!

        David used Andrew’s name here and called him a nothingburger. No problem with that, right? I’m sure David will be happy to go over to Andrew’s blog and straighten them all out, proudly. It’ll happen any minute now.

        Don’t worry your little head about it.

      • Notice how Josh is too illogical to address the issue himself. He has to rely on others who are actually competent even though in this case a little off.

      • Notice how David doesn’t want to engage with smart people with his criticism, and instead name-calls and takes potshots at them from a distance, and instead attacks defenseless and not very bright people like myself.

        Go ahead, David. Go over to Andrew’s to correct their misconceptions. I consider it your duty in the battle against ignorance.

      • It’s common knowledge who Andrew Gelman is and that the blog you publicize and use in your fake appeals to authority is Gelman’s. It’s also common knowledge that you are a disingenuous nasty little putz and it’s a mystery why Judith doesn’t enforce her thread bombardment rule and kick you to the curb.

      • When do teachers go back to work?

      • If Gelman thinks its important, he can comment here. I would take it seriously if he did.

        Just to repeat the point, Ioannidis’ and the CNN expert’s statements are correct as they stand assuming that R0 is already known. The point Gelman quotes is an obvious one too, viz., that pre-existing immunity will change R0 from what it would be if everyone was vulnerable to infection.

      • dpy6629: The original statement says nothing about calculating R0 and thus they appear to have assumed that R0 is known before the herd immunity threshold is calculated.

        No. Weissman and Greenland show how a particular R0 would, if known, undermine the argument of the CNN piece. They do that by selecting a value for an illustrative calculation.

      • Matt, They illustrate how pre-existing immunity would change the calculated value of R0. Once that value is given, HIT can be calculated. At that point, Ioannidis’ statement is of course correct. Those who are already immune count against the HIT total.

      • Another equally valid way to view this is that the definitions of R0 and HIT are too vague to be useful. If HIT is the percentage who must be immune to achieve an R less than 1, then those with pre-existing immunity must be counted in the HIT percentage. Using this definition, Ioannidis statement is true by definition. In this case, the R0 calculated from initial epidemic curves gives an incorrect value of HIT.

        This is just a total tempest in a teapot and not worth the time people have spent on it including me.

      • I see that another high profile statistician said this about Ioannidis’s calculation (my bold):

        Radford Neal says:
        August 4, 2020 at 11:47 am

        Ioannidis’ calculation is correct if the R0 value being used is that for a completely-susceptible population (with neither immunity from covid-19 infection nor cross-immunity from some other virus, as it’s speculated might actually be the case for 50% of the population). It’s wrong if the R0 value is for a population that has the speculated 50% immunity already.

        In practice, the R0 value would have to be estimated, presumably from the spread in the initial outbreaks of covid-19. It is not clear what this R0 value means. If there is no heterogeneity in pre-existing immunity to covid-19 (eg, 50% everywhere), the estimated R0 will be for such a population, and Ioannidis’ calculation would be wrong. But it seems entirely possible that there is heterogeneity in pre-existent immunity, since there will be regional variation in previous viral infections. In that case, it also seems quite possible that the locations of the initial outbreaks of covid-19 were preferentially in the places where there is less pre-existent immunity to covid-19, in which case the R0 estimated from these initial outbreaks might be close to that for a completely-susceptible population, and Ioannidis’ calculation could be close to correct.

        https://statmodeling.stat.columbia.edu/2020/08/03/math-error-in-herd-immunity-calculation-from-cnn-epidemiology-expert/#comment-1400747

      • Looking at the article by Weissman and Greenland makes me really wonder about the motivation of the authors. I cannot see any sort of maths error by Ioannidis. The only way one can deduce an error is by making a very ungenerous assumption about the methodology for calculating the “60 to 80%” – something not discussed by Ioannadis in any shape or form. The authors have chosen to assume that these values were calculated incorrectly by applying an “observed” R0 under the erroneous assumption of 100% susceptible population. Why? Nowhere is this apparent in the Ioannadis statement. If the values are derived correctly under a compatible assumption of 50% susceptibility, then his statement is tautological.
        Here is the full extract from the newspaper story:- “For herd immunity, if indeed we have a very large proportion of the population already being immune in one way or another, through these cellular responses, they can count towards the pool that you need to establish herd immunity. If you have 50% already in a way immune, because of these existing immune responses, then you don’t need 60 to 80%, you need 10 to 30% — you have covered the 50% already. The implications of having some pre-existing immunity suggests that maybe you need a small proportion of the population to be impacted before the epidemic wave dies out,” said Dr. John Ioannidis, a professor of medicine and epidemiology and population health at Stanford University.
        You note that there is no discussion of where the 60 to 80% comes from. It is a very simple statement and an entirely correct statement if the 60 to 80% has been calculated correctly under the assumption of 50% susceptibility. The authors choose to assume that the values were incorrectly derived under an incompatible assumption.
        Suppose that instead of the simple newspaper quote, Ioannidas had prefixed it with the following:-
        Let us hypothesise that in a homogeneous, well-mixed population which is 100% susceptible, the observed R0 value of the virus would be 5.0; i.e. on average 5 susceptible people are infected from each infected individual within the infectious period. We would calculate a HIT of 80% ( = 1 – 1/5), applicable to the entire population, under homogeneous assumptions. If, instead, 50% of the population were already immune, then we would expect the observed R0 to be only 2.5 (half of the previous value of 5.0), since, with the same social connectivity and transmissibility of virus, half of the exposed individuals are already naturally immune. This would yield an apparent HIT of 60% (= 1-1/2.5), but this is then applicable only to the 50% susceptible fraction of the population. For the full population, the HIT is then achieved at 50% + 0.6*50% = 80%. Hence, in both hypothetical examples, the proportion of the total population required to reach immunity either by natural resistance or by infection works out to be 80%. The big difference is that in the second case, 50% of the population is already immune, and hence herd immunity is reached when just 30% of the population become infected.
        This would then set his quote in context and make his meaning clearer to any analytic, but would probably leave the average reader somewhat bemused. His actual statement, on the other hand, was simple enough for the average reader to grasp the import of having a 50% susceptible population without too much mental strain.
        The authors could have written an informative article along the lines:- “It is worth noting that Ioannidis’s statement is true if the 60-80% HIT has been compatibly calculated for a 50% susceptible population, but it can be misinterpreted if it is assumed (by idiots like us) that the range derives from an observed R0 and a calculation based on the assumption of 100% susceptibility.” But no, they want to cry gotcha and argue a maths error.

      • I must admit that when I wrote the comment immediately above, I had not read through the comments attached to the Weissman and Greenland article. I thought when I read the original article that their ungenerous interpretation of the Ioannidis statement, which led them to declare a maths error, was based on a wilful choice of interpretation and therefore somewhat malicious. However, the comments make it more obvious that it was their inadequacy in basic analytic skills that led them to declare a maths error. Surprisingly, they had genuinely not realised that they were making a choice in asserting how the “60 to 80%” was calculated, and had only considered one fixed option for its derivation.
        A reader Carlos Ungil on August 4, 2020 at 4:00 am presented an argument very similar to the one I presented in my comment above. One of the authors, Sander Greenland, has a “Road to Damascus” moment, where he finally realises that there is an entirely valid interpretation of the Ioannadis statement which does NOT imply any maths error on the part of Ioannadis. He responds (to Carlos Ungil) as follows:-

        Carlos: Yeah, I think you are correct, our mistake is we should have said something more conditional like “if the herd immunity of 60-80% had its origin in the formula 1-1/R0, then the subtraction is wrong because that formula assumes homogeneity.” I think the reasons we pounced (like cats on a string) on Ioannidis’s statement as unconditionally wrong are that (1) the 60-80% looks like what has been bandied about from inserting Covid-19 R0 estimates in the formula, and (2) we’ve been conditioned to assume the worst case from witnessing less ambiguous missteps in his previous statements in published controversies over “coining”, “credibility ceilings”, “statistical significance”, etc. and online over “zombie statistics” and of course covid incidence and fatality. Our bad – even if we weren’t generous enough to give him the benefit of the doubt, we should have been appropriately cautious in attributing error.

        This grudging and ungracious acknowledgement of their error in logic should have been the end of the matter. However, in later comments, Weissman is still unable to “get it” even after his co-author specifically brings the above exchange to his attention, and he (Weissman) continues to argue that there is only one possible interpretation of the derivation of the “60 to 80%”.

        Not a lot of glory to share round here.

      • Indeed, Carlos won the thread as he often does.

      • kribaez: I must admit that when I wrote the comment immediately above, I had not read through the comments attached to the Weissman and Greenland article.

        That is a good post.

      • Matthew,
        Thank you.

        Joshua,
        “Indeed, Carlos won the thread as he often does.”
        If you are now claiming here that you had already realised before my comments that you had in good faith supported something which was fallacious, and then had a change of heart, then it would have been courteous to me and to other readers to make a comment explaining the reason for your withdrawal of support, accompanied in this instance by an apology to dpy6629. It might have saved me many minutes. Given my age, all of my time is incredibly valuable – to me at least.

      • kribaez –

        > If you are now claiming here that you had already realised before my comments that you had in good faith supported something which was fallacious, and then had a change of heart, then it would have been courteous to me and to other readers to make a comment explaining the reason for your withdrawal of support, accompanied in this instance by an apology to dpy6629.

        Wow. Here’s what I’m “claiming.” After I posted here, and challenged David to go over to Andrew’s, and posted David’s comment over at Andrew’s, I followed the ensuing convo over there. And from what I could tell, Carlos seemed to have the most insightful take on the subsequent discussion – as nears as I could tell. Carlos often makes very useful and insightful comments – and trying to follow what he writes when the discussion gets technical is what I often try to do.

        In fact, after Nic posted his comment above, I had meant to point to Carlos’ comment in particular but I didn’t get to it right away and then forgot. I didn’t see your August 13, 2020 at 5:55 am comment and if I had I may well have pointed to Carlos’ comment at that point.

        I’m that sense, I’m not sure that I owe you an apology – as I didn’t read your comment – but it’s kind of funny that you’re taking me to task given that I meant to point to Carlos’ comment w/o reading your earlier comment.

        As for an apology to David,…I’m not sure that one is in order: I read Carlos’ conclusion as conditional and so tid Carlos is correct then the correctness of Ioannidis would be conditional (and the criticism of him would be in error for not recognizing the conditionality). To the extent that David’s pronouncement on the correctness of Ioannidis’ was conditional as well, then I offer an apology.

        And on top of that I will acknowledge that I displayed childish behavior above. David regularly insults me in his comments. To my recollection he has never apologized for that, and in fact he often complains about ad homs even as he regularly insults me and seeks to discredit my arguments by attacking me (such as saying my arguments should be dismissed because I’m not a scientist), or my character, or my political identity, blah, blah. And while that might be relevant to how I reflexively engaged in childishness, it isn’t a justification for acting childishly on my part. Acting like a child is acting like a child. The only person responsible for that is me.

      • Actually my main issue with Josh is that he clutters comment threads with very long, repetitious, and usually evidence free comments. When evidence is cited, it is usually from the mainstream media such as the New York Times. He should read Bari Weiss’ resignation letter which says that the Times no longer does journalism. It casts every story to further intersectionality narratives.

        He also is ethically challenged. A few years ago he went on the war path to get Judith to change her “biased and motivated reasoning” and was put on permanent moderation for it. The arrogance of an anonymous non-scientist internet persona to judge an imminent scientist’s reasoning with no real specifics is breathtaking. He tried to do the same thing to me earlier this spring. This is classic mind reading behavior, and is unethical for those in the “helping” professions. He also likes to post out of context comments on other blogs to find support for his positions. This instance is just the latest. He even tries to get others to do this dirty work for him.

        A word of adult advice for Josh. Cut the unethical behavior. Before commenting ask yourself if your comment is relevant and has more than feelings behind it. Then reduce its length by a factor of 10. You will find that the exasperated responses will be much more moderate and useful for everyone involved.

      • Just to summarize and wrap this up. This is a really silly phony controversy about an off the cuff statement.

        If herd immunity threshold is defined as the percent who must be immune for R to drop below 1, then those who are already immune do count towards the HIT, just as Ioannidis said.

        If there is pre-existing immunity, then estimating R from the early epidemic data and then calculating HIT will not give the same HIT as defined above.

    • Aside from the math error, we really have no idea if even the 50% is a valid number. Nobody knows how prevalent T cell immunity is or how protective it is. It probably declines dramatically with age so may only be of value for people in their teens and twenties.

      • Coronavirus Immunity: How Does Your Age Play a Factor?
        Certain key immune cells — B cells and T cells, which are the virus fighters — become fewer in number with age.
        A 2018 study reviewed in the journal Nutrients showed that basic nutrients like vitamins A, C, D, E and the B vitamins, along with folic acid, iron, selenium and zinc, are essential for “immunocompetence,” with deficiencies causing lower T cell production and an inability to resolve inflammation.
        – AARP
        Let’s argue about masks instead.
        Calm
        Research has shown that unregulated stress can accelerate immunosenescence.
        I was right. Stay calm. Don’t riot. Don’t topple statues and reopen old wounds. The Buddists are kicking our butts.

      • Joe - the non epidemiologist

        Ragnaar- your comments regarding declining immunity with age makes sense, though it seems slightly inconsistent with other flu viruses where the death rate is more evenly distributed among all ages whereas covid death rate seems to be heavily skewed to the elderly. That being said, there was some discussion/thought that the oral polio vaccine may have some cross immunity with covid. However the oral polio vaccine was not available until approximately 1961 or 1962 such that the 70 + year olds didnt get the vaccine until their late teens or early 20’s , with the suspected possibility that they never really developed immunity. The implication is that the body’s maturing needs to occur by certain points in time to avoid retardation in various body functions, ie crawling, walking talking, puberty, etc

        That being said, the human body and the human race needs to constantly update / improve their immune system. My concern is the current policy is retarding and delaying the needed development / evolution of our immune system to the long term detriment of the human race.

        Thoughts

    • Joshua: https://statmodeling.stat.columbia.edu/2020/08/03/math-error-in-herd-immunity-calculation-from-cnn-epidemiology-expert/

      Thank you for the link. It is worthwhile to read the main article; and to read the commentaries and rejoinders.

      Everybody is forced to make conjectures about unknown quantities in order to answer the question: What might be happening, and what might happen next? OK, two questions. The biggest mistake might be the belief that one’s favorite conjecture is actually true, given that everything that might be knowable is poorly estimated.

      The CNN piece is not based on the most recent evidence, but the conjectural arguments are unaffected because they are obvious conjectures.

  50. Don –

    Time to add yet another member of the Trump crew to the TDS list. I know it’s getting quite long (Sessions, Preibus, Scaramucci, Kelly, Bannon, McMaster, Bolton, Potter, Short, Taylor, Cohn, Omarosa, Christy, Hassett, Shulkin, Tillerson, Mattis to name just a few) but I’m sure you’ll have enough hate left to throw some his way as well. Maybe you can just add a “and Goroir too” every time you insult Fauci, to make it easier?

    –snip–
    The White House coronavirus task force member charged with coordinating the U.S. testing effort said Sunday that the nation needs to “move on” from the debate over hydroxychloroquine, a drug President Donald Trump has promoted as a COVID-19 treatment even though there is no clear evidence it is effective.

    • It’s being used all over the world, including in the U.S., by doctors treating actual patients, who believe it is effective. There is nothing that is proven to be effective, by any measure other than one or two marginally signicicant clinical trials. Why tf should we move on, because babbling flip flopping apparatchiks who haven’t given good consistent advice say so? Isn’t little weasel Fauci the clown who said the VERY FAKE RETRACTED Lancet study put the HCQ issue to rest? Pathetic. And you should be kicked back to kenny’s blog.

      • Don –

        > Why tf should we move on…

        I guess he has his reasons…

        … or it’s TDS.

      • I will help you, dummy. It is not Fauci’s job to determine what drugs are suitable for FDA approval. There are still a gazillion trials of HCQ ongoing. It is still widely used against COVID 19 throughout the world. Several countries rely on it as a part of the standard of care.

        The one thing that has been proven by trials and clinical usage up to now is that it is not the killer drug that left loons portrayed it to be, just after Trump “touted” it. It’s safe when properly dosed and that a fact jack. Period.

        Fauci declared HCQ dead based on a BLATANTLY FAKE trial that was reluctantly retracted by the Lancet fake TDS editor. It only got by him in the first place, because he is willfully blinded by TDS.

        There is politically motivated campaign to squash a drug that a hella lot of doctors are using against a deadly pandemic with no effective cure and you are a snide and nasty part of it.

    • Joshua: The White House coronavirus task force member charged with coordinating the U.S. testing effort said Sunday that the nation needs to “move on” from the debate over hydroxychloroquine,

      The phrase “move on” is totally meaningless here. “It could mean stop quarreling and let the doctors use their own best judgment until research can produce a clear and convincing result.”

      Whether Trump is for it or against it is irrelevant at this point.

      • Are you claiming that Fauci is not and hasn’t been trying to put the kibosh on HCQ? Seriously.

      • “Whether Trump is for it or against it is irrelevant at this point.”

        Very naive.

    • Brett Giroir might be interested in this recent Italian study which supports the findings of the Ford Hospital study. https://www.ijidonline.com/article/S1201-9712(20)30600-7/fulltext

      A total of 539 COVID-19 hospitalised patients were included in our cohort in Milan, from February 24 to May 17,2020 of whom 174 died in hospital (day 14 probability of death: 29.5%–95%CI: 25.5–34.0). We divided a subset of our cohort in three groups who started treatment a median of 1 day after admission: those receiving hydroxycholoroquine alone (N = 197), those receiving hydroxycholoroquine + azithromycin (N = 94), and those receiving neither (controls) (N = 92). Of the latter group, 10 started HIV antivirals (boosted-lopinavir or –darunavir), 1 teicoplanin, 12 immunomodulatory drugs or corticosteroids, 23 heparin and 46 remained untreated. The percent of death in the 3 groups was 27%, 23% and 51%. Mechanical ventilation was used in 4.3% of hydoxychloroquine, 14.2% of hydroxycholoroquine + azithromycin and 26.1% of controls. Unweighted and weighted relative hazards of mortality are shown in Table 1. After adjusting for a number of key confounders (see table), the use of hydroxycholoroquine + azithromycin was associated with a 66% reduction in risk of death as compared to controls; the analysis also suggested a larger effectiveness of hydroxychloroquine in patients with less severe COVID-19 disease (PO2/FiO2 > 300, interaction p-value<.0001). Our results are remarkably similar to those shown by Arshad et al.

  51. Don –

    > and you are a snide and nasty part of it.

    Yeah. The massive reach of my anonymous blog comments is resulting in millions of deaths, if not trillions.

    So does Goroir have TDS also? You avoided my question. I think you now have to add Birx as well since she also said that our response to the pandemic hasn’t been “perfect” as your cult leader decrees.

    Just for the record, I’m not sure why they just wouldn’t say that HCQ shouldn’t be used outside of clinical supervision, except that they must think that it’s likely to be used irresponsibly.

    The problem there is that they may not realize that whenever they discourage its use, it’s only likely to increase its use by cult members who would happily sacrifice in any way if they think it might please their dear leader.

  52. Matthew R Marler

    more on the role of colds in promoting T-cells effective against SARS CoV-2:

    https://www.nature.com/articles/s41586-020-2598-9

    Here, we investigated SARS-CoV-2 spike glycoprotein (S)-reactive CD4+ T cells in peripheral blood of patients with COVID-19 and SARS-CoV-2-unexposed healthy donors (HD).

    • Selection: To this end, we designed two peptide pools (15 amino acids
      (aa), 11 aa overlaps) spanning the entire S that comprised different
      amounts of putative MHC-II epitopes based on identified epitopes in
      SARS-CoV11–13 (Fig. 1a). SARS-CoV-2 S peptide pool PepMixTM 1 (henceforth:
      S-I) spans the N-terminal part (aa residues 1-643) including 21
      predicted SARS-CoV MHC-II epitopes (Fig. 1a, Extended Data Fig. 1,
      Extended Data Table 1). The second peptide pool PepMixTM 2 (S-II) covered
      the C-terminal portion (amino acid residues 633-1273) including
      13 predicted SARS-CoV MHC-II epitopes (Fig. 1a, Extended Data Fig. 1,
      Extended Data Table 1). The peptides of the receptor-binding domain
      (RBD) in the subunit S1, which represents a major target of neutralizing
      antibodies, are included in S-I18,19.
      For antigen-specific stimulation, PBMC from patients and HD (see
      patient and HD characteristics: Table 1, Extended Data Table 2 and 3)
      were stimulated for 16 hours with S-I and S-II peptide pools, respectively.
      Antigen-reactive CD4+ T cells were identified by co-expression of 4-1BB
      and CD40L, which allows for sensitive detection of S-reactive CD4+
      T cells re-activated by TCR engagement ex vivo20–22 (Fig. 2a, Extended
      Data Fig. 2, and Supplementary File). In 12 (67%) and 15 (83%) of 18
      patients we detected CD4+ T cells reacting against the S-I and the S-II
      peptide pool, respectively (Fig. 2b, d, e). Most COVID-19 patients with
      critical disease exhibited no reactivity to S-I (Extended Data Fig. 3).
      Remarkably, S-II-reactive CD4+ T cells, albeit at slightly lower frequencies
      compared with patients, could also be detected in 24 of 68 HD (35%),
      henceforth referred to as reactive healthy donors (RHD) (Fig. 2c, d, e).
      S-I-reactive CD4+ T cells could only be detected in 6 out of the 24 RHD,
      i.e. in 5.8% of all HD (Fig. 2d, e). All HD were negative for IgG antibodies
      specific for S subunit 1 (S1) in contrast to patients (Fig. 2f). We further
      ruled out early SARS-CoV-2 infection at initial sampling by 1) direct PCR
      standard diagnosis in 10 RHD (data not shown), 2) serological testing
      (Fig. 2f) and 3) by repeated serological testing at least 28 days later for
      65 of 68 HD (Extended Data Fig. 4).

  53. Stephen Anthony

    Thanks a lot for your reply. I can see now that a long lived virus outside the host (such as flu) would create different problems for your & Gomes et al’s model.
    The context of the lost article was a male epidemiologist being interviewed and it didn’t give a lot of space for Gomes et al’s work. He seemed more concerned with the fact that her paper was not peer reviewed, In the midst of a pandemic where lives will be lost, his attitude seemed to be as useful as a chocolate teapot.

  54. https://issues.org/covid-19-and-the-futility-of-control-in-the-modern-world/

    COVID-19 and the Futility of Control in the Modern World

    “Just as a hammer can condition its holder to see every problem as a nail, so unfolding forms of modernity around the world are ironically enslaved by their perennial aspirations to control. This is perhaps why the massive challenge of climate disruption is currently addressed in terms of “stabilizing global climate” by controlling the average temperature of the entire planet, an extraordinary conceit.”

    Government at almost every level, sucked with the virus. There are many things we can’t control. Yet we keep trying. Fails: Police, schools, science, all of the Federal government, over half of the State governments, almost all of the big city mayors.

    • Ragnaar: COVID-19 and the Futility of Control in the Modern World

      That’s silly. There is every reason to think that at least one of the vaccines now being tested will be helpful in controlling the pandemic.

      Why do you include science among the “fails”? Is it too slow for you?

      • Thank you. The first thing is the confusing messages we got and get from science. The idea that science has an answer that includes shutting down economies I think we can say is wrong. And science has to reach a compromise with economics in this case. What’s wrong with global warming science? What’s wrong with the this science is similar. Science has been wrong many times and did not lead this time. It failed us. I can accept that and call for no changes. More science in this case, would not have saved us. I said elsewhere, we are what made us great. Our science recently is trying to make us not great. Another example of that is the renewables scam. We don’t need to go back to past. We need to acknowledge that some things cannot be controlled. It’s chaos. We are not puppets. It’s too complicated. The answer is the individual. The primary thing that makes us great. We don’t give that up. Like some failed Western European has been of a country.

      • Ragnaar: Science has been wrong many times and did not lead this time. It failed us.

        Science has responded faster to this nearly new threat faster than to any other new infectious agent that I know of; getting 4 vaccines into clinical trials this soon is a major success.

        As a martial example, consider the Battle of the Coral Sea, May 1942; it was tactically a loss for the US, but hardly a demonstration that aircraft carriers were a failed response to the new naval threat. Or if you like sports, this is early innings yet; or early 4th quarter of KC Chiefs vs anybody you might name (49’ers?)

        .

      • “Whatever futures may struggle into being, the present pandemic suggests that they will likely turn out better if shaped to resist this failing reflex of control.”

        “In the process, can democracy be imagined not as a codified managerial procedure, but as multiple continual struggles for access by the least powerful to capacities for challenging power whose legitimacy depends on the promise of control?”

        It’s about control. And science as an instrument of that. They grab the science and use it to assume control. And they are government. So they aren’t very good at it.

        So they are going to fix this pandemic. But they need control to do so. What other tools do they have? They were going to fix the climate. They didn’t. I see that they still want control of resources as represented by the amount of deployed renewables.

        They assumed control of our economy, and it was a trainwreck. We are fortunate that it is resilient. And there aren’t any better places to put your money.

        I don’t care how much they want to fix things and how much people want them to unicorn fix things, they aren’t very good at it.

      • No way, no how was the Battle of the Coral Sea a defeat for the U.S. The imperative was to stop the Japs (that’s what they were called then) from taking Port Moresby. Mission accomplished.

        The U.S.N. lost one fleet carrier, but damaged two IJN carriers enough to prevent them from being able to take part in the Battle of Midway. Their battle strength would have been 6 fleet carriers, to our 3. As everyone knows, Midway turned the tide. We stomped their butts real good and they never recovered.

      • Don Monfort: No way, no how was the Battle of the Coral Sea a defeat for the U.S.

        My phrase was ‘tactically a loss”. The US lost more planes, pilots, and ships, but the damaged US carrier was returned to combat more quickly than the damaged Japanese carrier (because of the naval facility and manpower at Pearl Harbor), indeed in time for the decisive Battle of Midway.

        Congress was at the time debating whether to fund more carriers, a decision supported by the Battle of Midway.

        My whole point was that a “tactical setback” (e.g. failures of HCQ clinical trials to produce decisive results) is not a “defeat”.

      • OK, you can ignore the fact that the reason the USN was in the Coral Sea was to prevent the IJN from taking Port Moresby. Do you think that wasn’t important? And there is no way in hell that the United States was not going to produce carriers in over-abundance for the war in the Pacific, after the Pearl Harbor lesson.

        We lost a rook and four pawns, they lost a knight and five pawns with two rooks put out of action. They were prevented from taking Port Moresby and their fleet minus two of the planned six fleet carriers got stomped at Midway. Some naive nimrod armchair historians might call Coral Sea a tactical defeat, but we know better.

      • PS: The Japs lost more planes and pilots. The Zuikaku was put out of action, substantially because they lost a lot of planes and aircrew.

        You like links:
        https://www.navytimes.com/news/your-navy/2019/05/03/what-if-the-japanese-had-won-the-battle-of-the-coral-sea/

      • Alex Berenson: “There Are Good, Epidemiological Reasons That Lockdowns Don’t Work”
        https://www.realclearpolitics.com/video/2020/08/05/alex_berenson_there_are_good_epidemiological_reasons_that_lockdowns_dont_work.html
        I’d call it a science fail.
        “”There are good, epidemiological reasons that lockdowns don’t work,” he told Carlson Tuesday, “which is why, for 15 years, experts on pandemics said this was not a good idea and all of a sudden in March they threw out everything they been saying.””
        The science today. Look we did this, and Sweden is bad. Facist countries are kicking our butts with behavior modifications.
        We flattened the curve. Remember that? It was a panic. That’s the science today.
        Say I believe the 15 years thing above. Slowly. I’ll go with the 15 years thing until something better comes along. Science is not to panic.
        Science today is the gotcha question, How many deaths are acceptable? Our politicians failed at science, and the scientists who ought to know better failed. The reason we listen to scientists is what?
        We are fine. It’s time to get back to work. People die. It’s part of life.

      • Don Monfort: OK, you can ignore the fact that the reason the USN was in the Coral Sea was to prevent the IJN from taking Port Moresby. Do you think that wasn’t important?

        If you don’t like the Battle of the Coral Sea as a “tactical loss”, consider the First Battle of Savo Island. Or the Prussian setback at Quatre Bras just before their re-emergence at the Battle of Waterloo.

  55. >Government at almost every level, sucked with the virus. There are many things we can’t control. Yet we keep trying. Fails: Police, schools, science, all of the Federal government, over half of the State governments, almost all of the big city mayors.

    I love how the set of folks who hate them some gubment ’cause all the failures, tends to overlap with the set of folks who promote the message of Pinker et al. who talk about how much things are getting better.

    Less violence, less hunger, less crime, more equal rights, less discrimination, rising standard of living, scientific advancement in many, many realms, more access to speech, longer life expectancy, lower infant mortality, more agency for more people all across the planet – all contemporaneous with “more government” that “fails.”

    Ah, for the good ol’ days when fewer people had more disproportionate power, I love the binary thinking. Thanks for the quote, Ragnaar.

    If only we could go back to Shangri-la when people could build statues honoring people who fought to preserve the institution of slavery – things would be so much better!!!!!! Make ‘Merica Great Again!!!!!

    • All those good things you mention. Capitalism. What didn’t fail in the Godzilla of a pandemic? Amazon. Businesses free of the new restrictions for the most part. Wal-mart and Target did not fail. Hardware stores in MN anyway. You run a country for the 1% of the time you have to do something. This was one of those times. We failed. You put these idiots in charge, and see what happens? Capitalism. Dollars. Greed. My money. That’s what’s good. Let’s try that.

    • Correlation does not imply causation. We do know that socialism and communism have been human rights disasters wherever they have been tried and the ideology actually calls for elimination of freedom.

    • Where is the country with a tiny government that has such great results?

      This is the binary thinking that underlies the anti-giveenment fanatics that sit back and enjoy the benefits of a robust government with each breath they take.

      Yes, correlation does not equal causation us exactly the point. It means that you can’t draw a causal line between “government” and the failure of science, etc., exactly as Ragnaar wishes to do.

      It’s more complicated than that. But what we do see is that rhe countries which have the best results, all, have fairly robust governments. Every one. Unless you like the results in a place like Somalia.

      Does that mean that more government = a better society? If course not. But no one actually makes that argument. It is the straw man upon which a whole ideology of hatred lies. By the same token, Stalinism and Maoism doesn’t mean that more government = murderous totalitarian states. The world is more complicated than that. The world isn’t binary. Cauality is multi-factorial. What really exposed the bankruptcy of the anti-government fanatics is that many of them line up in the line of cultists to support the big government, authoritarian cult of Trump.

      • ‘…you can’t draw a causal line between “government” and the failure of science, etc., exactly as Ragnaar wishes to do.”

        You can. Look at South Dakota. Trump failed. Bleeping Sweden did not yet Trump did. He folded. He could not take the heat.

        He assumed magical powers to his advisers that does not exist. Government funds science, period. Remember ventilators and hospital ships?

      • Josh, You can’t resist erecting straw men such as “anti-government fanatics.” Who are these mythical people? Are they more than a handful of isolated survivalists? British capitalist civilization has produced some of the most free and prosperous societies in history. It’s the denialist left that tries to make these civilizations the villian that is tremendously dangerous because it’s completely insane and denial of history. But that’s the idea in Marxism, i.e,., a pseudo-science of history that has led to immeasurable suffering.

    • Where is the country with a tiny government that has such great results?

      • So you seem to be saying the government has to be large or small. Either/Or. You might read my posts sometimes. We are the greatest nation that has ever been. Because of capitalism. We are one of the most capitalistic countries as seen by where all the stock market money is. Which is here. Sure, Hong Kong has a stock market or used to have one. There’s some in Europe but who really cares about those? The proof of a smaller government, that has a more free people is the money. It’s here. And more wheelbarrows of it keep arriving every day. Even China sends their money here.

        Less regulation. From what I read in the papers, there isn’t any left because Trump is a racist. A lower corporate tax rate. Most libertarians are Okay with these two things. Gun ownership. We win. We own the most guns per capita of almost any nation. And they don’t need to be redistributed to those without them. Trump overall, is for free speech. It was one of the main pillars of his election. Renewable/scam/boondoggle energy. Trumps pretty good on that one. He’s against rioting, reparations, and revisionist history.

        And you know what? I am happy. I am fortunate. I don’t have much guilt. Trump is not the ideal President. When did we ever have one? I’ll be fine under a Biden Presidency. My city is Republican enough and doesn’t hate the police. The inner cities though. Once they can’t blame Trump anymore it’s going to be ugly.

    • Joshua: I love how the set of folks who hate them some gubment ’cause all the failures, tends to overlap with the set of folks who promote the message of Pinker et al. who talk about how much things are getting better.

      Any specific examples?

      You misunderstood. Specific US Federal agencies “underperformed” at their tasks early in the pandemic, and since. That has nothing do do with Pinker’s claim that The Enlightenment has generally made almost everything better. Much enlightened progress resulted from governments relaxing control over everything.

  56. Don –

    This is for you, my friend. Thanks for reading.

    https://twitter.com/brenonade/status/1290663954419798016?s=20

  57. FollowTheAnts

    Wow. Amazing discussion.

    I’m sort of a “number to the left of the decimal point” kind of person…

    If you try to diagram a model of the many “nodes” in the CV19 phenomenon – and then try to translate that into some kind of a model to drive policy for billions of people to follow…

    ….you may notice along the way that all the esoteric data and assumptions change radically when…

    ….you stop using inputs like “state boundaries”….

    …and add even the crudest information on population density like cases per “village”, “zip code”, etc…

    The most sophisticated macro models built by the experts in power, change dramatically when you include any proxy for “humans per square kilometer” versus “humans per state”, “age group”, etc

    Here is one certainty

    There are ZERO humans on Earth who can predict with any precision how this genomically-driven phenomenon will work out….

    ….and there are zero humans on Earth who can devise a global implementation plan that will eradicate the insult to the collective human genome

    These are assertions that can be taken to the bank

    They are proven more true every day by the misplaced concreteness of the “expert” models

    Be safe, well, and happy……and lucky

    • From the Google white paper available at the link:

      1 Introduction
      The rapid spread of COVID-19, the disease caused by the SARS-CoV-2 virus, has had and continues to have a significant impact on humanity. Accurately forecasting the progression of COVID-19 can help (i) healthcare institutions to ensure sufficient supply of equipment and personnel to minimize fatalities, (ii) policy makers to consider potential outcomes of their policy decisions, (iii) manufacturers and retailers to plan their business decisions based on predicted attenuation or recurrence of the pandemic, and (iv) the general population to have confidence in the choices made by the above actors. Data is one of the greatest assets of the modern era, including for healthcare1. We aim to exploit the abundance of available data online to generate more accurate COVID-19 forecasts. From available healthcare supply to mobility indices, many information sources are expected to have predictive value for forecasting the spread of COVID-19. Data-driven time-series forecasting has enjoyed great success, particularly with advances in deep learning2–4. However, several features of the current pandemic limit the success of standard time-series forecasting methods:
      Because there is no close precedent for the COVID-19 pandemic, it is necessary to integrate existing data with priors based on epidemiological knowledge of disease dynamics. The data-generating processes are non-stationary because progression of the disease influences public policy and individuals’ public behaviors and vice versa. There are many available data sources, but their causal impact on the progression of the disease is unknown. The problem is non-identifiable as most infections can be undocumented. Data sources are noisy due to reporting issues and data collection problems. In addition to accuracy, explainability is important – users from healthcare, policy and businesses need to be able to interpret
      the results in a meaningful way to help them with strategic planning.
      Compartmental models, such as the SIR and SEIR5 models, are widely used for disease modeling by healthcare and public authorities. Such models represent the number of people in each of the compartments (see Fig. 1) and model the transitions between them with differential equations. Compartmental models often have several shortcomings: (i) they have few parameters and hence low representational capacity, (ii) the modeled dynamics are stationary due to static rates in the differential equations;
      (iii) they do not use covariates to extract information; (iv) they assume well-mixed compartments, i.e. each individual is statistically identical to others in the same compartment6; (v) there is no efficient mechanism for sharing information across time or geography, and (vi) they suffer from non-identifiability – identical results may arise from different parametrizations7.
      In this work we develop a model that provides highly accurate forecasts that preserve interpretability that go beyond the capabilities of standard compartmental models by utilizing rich datasets with high temporal and spatial granularity. Our approach is based on integrating covariate encoding into compartment transitions to extract relevant information via end-to-end
      learning (Fig. 1).

      Good survey of problems. Now to examine success of their proposed solutions.

      For those of you interested in appeals to authority, Google employs excellent statisticians and programmers. They test their algorithms in the real world continuously. This ought to be a good and rich development program to follow.

      • and more: To get high accuracy, we introduce several innovative contributions:
        1. We propose an extension to the standard SEIR model that includes additional compartments for undocumented cases and hospital resource usage. Our end-to-end modeling framework can infer meaningful estimates for undocumented cases even if there is no direct supervision for them.

        2. The disease dynamics vary over time – e.g. as mobility reduces, the spreading decays. To accurately reflect such dynamics, we propose time-varying encoding of the covariates.

        3. We propose learning mechanisms to improve generalization while learning from limited training data, using (i) masked supervision from partial observations, (ii) partial teacher-forcing to minimize error propagation, (iii) regularization, and (iv) cross-location information-sharing.

        more later, I’m sure.

      • another teaser: Training: We implement Algorithm 1 in TensorFlow at state- and county-levels, using `2 loss for point forecasts. We employ
        Bayesian optimization based hyperparameter tuning (including all the loss coefficients, learning rate, and initial conditions) with the objective of optimizing for the best validation loss, with 400 trials and we use F = 300 fine-tuning iterations. We choose the compartment weights lD = lQ = 0:1, lH = 0:01 and lR(d) = lC = lV = 0:001.5 At county granularity, we do not
        have published data for C and V, so, we remove them along with their connected variables.

        Evaluation: Our model is capable of forecasting all the modeled compartments, but we focus on the number of deaths for
        benchmarking as it is known to be the most reliable ground truth data to assess accuracy476. In Appendix, we also present results for the forecasting of the number of hospitalized. Note that for each experiment, we reserve the last t for testing, and we do not use any of the testing data for model development – our model selection is automated and is entirely based on the validation performance. We present our results in Root Mean Square Error (RMSE) and Mean Absolute Error (MAE) metrics,

        If you are interested in model development, testing, and improvement, this is a paper for you.

      • Matthew,
        My thanks also. This looks like a worth-failing-at attempt, although I predict that they will eventually have to change the level of granularity to break out city data from county-level data to have meaningful explanatory value.

    • Thanks for the link. I will study their modelling.

  58. JAMA: experiences of home health care workers in NYC during COVID-19 pandemic:

    https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2769096?guestAccessKey=8504caee-5c2c-4dd8-aa02-464db04f81d9&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jamainternalmedicine&utm_content=olf&utm_term=080420

    snippet: From March to April 2020, a qualitative study with 1-to-1 semistructured interviews of 33 home health care workers in New York City was conducted in partnership with the 1199SEIU Home Care Industry Education Fund, a benefit fund of the 1199 Service Employees International Union United Healthcare Workers East, the largest health care union in the US. Purposeful sampling was used to identify and recruit home health care workers.

    Kind of polemical, lacking information on risk compared to say hospital ICU staff. I am surprised that JAMA felt it worth publishing.

  59. another trial with convalescent plasma:https://jamanetwork.com/journals/jama/fullarticle/2766943?guestAccessKey=f19eabd6-c57e-46b3-a342-d42afdcedb34&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=etoc&utm_term=080420

    snippet: Results Of 103 patients who were randomized (median age, 70 years; 60 [58.3%] male), 101 (98.1%) completed the trial. Clinical improvement occurred within 28 days in 51.9% (27/52) of the convalescent plasma group vs 43.1% (22/51) in the control group (difference, 8.8% [95% CI, −10.4% to 28.0%]; hazard ratio [HR], 1.40 [95% CI, 0.79-2.49]; P = .26). Among those with severe disease, the primary outcome occurred in 91.3% (21/23) of the convalescent plasma group vs 68.2% (15/22) of the control group (HR, 2.15 [95% CI, 1.07-4.32]; P = .03); among those with life-threatening disease the primary outcome occurred in 20.7% (6/29) of the convalescent plasma group vs 24.1% (7/29) of the control group (HR, 0.88 [95% CI, 0.30-2.63]; P = .83) (P for interaction = .17). There was no significant difference in 28-day mortality (15.7% vs 24.0%; OR, 0.59 [95% CI, 0.22-1.59]; P = .30) or time from randomization to discharge (51.0% vs 36.0% discharged by day 28; HR, 1.61 [95% CI, 0.88-2.95]; P = .12). Convalescent plasma treatment was associated with a negative conversion rate of viral PCR at 72 hours in 87.2% of the convalescent plasma group vs 37.5% of the control group (OR, 11.39 [95% CI, 3.91-33.18]; P < .001). Two patients in the convalescent plasma group experienced adverse events within hours after transfusion that improved with supportive care

    Early Study Termination
    Due to the containment of the COVID-19 epidemic in Wuhan, China, the numbers of patients with COVID-19 decreased in late March 2020. No new cases were reported in Wuhan for 7 consecutive days after March 24 (data from the National Health Commission of the People’s Republic of China).15 The last patient enrolled in this study was on March 27, 2020, and for the next 3 days, we were not able to recruit more patients and did not have any recruitment targets. After discussion with the expert committee of the Institute of Blood Transfusion, the study was terminated by the sponsor (Chinese Academy of Medical Sciences) and the leading primary investigator on April 1, 2020, with a total of 103 patients enrolled. There was no interim or preliminary data review prior to making this decision.

    .

  60. even more on SARS CoV-2 reactive Tcells in uninfected patients:
    https://science.sciencemag.org/content/early/2020/08/04/science.abd3871.full

    Small sample in LaJolla, CA

    • Yes; now one of many studies showing cross-reactive T-cell activity.

      From the press release:

      “Immune reactivity may translate to different degrees of protection,” adds Sette. “Having a strong T cell response, or a better T cell response may give you the opportunity to mount a much quicker and stronger response.”

      “The new work builds on a recent Cell paper from the Sette Lab and the lab of LJI Professor Shane Crotty, Ph.D., which showed that 40 to 60 percent of people never exposed to SARS-CoV-2 had T cells that reacted to the virus.”

      “For the new study, the researchers relied on a set of samples collected from study participants who had never been exposed to SARS-CoV-2. They defined the exact sites of the virus that are responsible for the cross-reactive T cell response. Their analysis showed that unexposed individuals can produce a range of memory T cells that are equally reactive against SARS-CoV-2 and four types of common cold coronaviruses.”

      “We have now proven that, in some people, pre-existing T cell memory against common cold coronaviruses can cross-recognize SARS-CoV-2, down to the exact molecular structures,” … “This could help explain why some people show milder symptoms of disease while others get severely sick.”

      Naturally, a cautionary note is added:
      “The research, published Aug. 4, 2020 in Science, may explain why some people have milder COVID-19 cases than others — though the researchers emphasize that this is speculation and much more data is needed.”

    • Joe - the non epidemiologist

      Two observations that would tend to make the lancet study near worthless
      A) there is no pre covid measurement & therefore no way to compare the delta pre/post covid recovery

      B) They are measurements for the covid affect patients is 1-3 months post covid. That period seems to be way to early to make any valid assessment of any possible “permanent ” damage.

      I have seen permanent damage with some individuals with West nile virus, though it has only been with a few individuals and then only slight impairment. So I agree it is possible, but a blanket permanent damage as insinuated with the lancet study seems highly unlikely

      • Joe – the non epidemiologist: A) there is no pre covid measurement & therefore no way to compare the delta pre/post covid recovery

        It’s COVID-19 cases versus non-COVID-19 patients. So the the lack of change measures does not render the study worthless.

        this is their conclusion: nterpretation: Study findings revealed possible disruption to micro-structural and functional brain integrity in the recovery stages of COVID-19, suggesting the long-term consequences of SARS-CoV-2.

        I am not reading an insinuation of permanence there or anywhere else.

  61. Geoffrey Williams

    Nic, as a layperson on the subject of pandemics, I would have thought that herd immunity could not be achieved until all the individual members of the herd have been exposed to the virus. Some will survive and the remainder wil die from the virus. Can you explain in simple terms why my reasoning is wrong.
    Yours respectfully, Geoffrey Williams.

    • I feel I know the answer to this one – so let me take a crack at it.

      Herd immunity is defined as 1 – 1/R0. So if R0 is 3 (meaning at the start of the outbreak, each infected person infects 3 others) – then herd immunity would be 1 – 1/3 which is 2/3 or about 67%.

      So in theory, once 67% of the population had been infected and either died or was cured, then spread would drop to less than 1 person infected for each infected person, and the disease fizzles out (because it is so hard to spread because so many still living people are immune).

      That is my lay person understanding of herd immunity.

    • Geoffrey: If each infected person has contacts with 3 new people capable of transmitting the infection within an average of 7 days (infectious period), then the number of new cases will grow by a factor of 3^n after n weeks. If fear and public health measures reduce the number of contacts and the risk of those contacts so that an average of only 0.8 new people are infected, the the number of new cases will shrink by 0.8^n (or 17% after 8 weeks) and eventually die out. Now suppose fear and public policy measures end and things return to normal. Then the pandemic will start increasing by 3^n again. However, if 2/3rds of the people have already been infected and are now immune, 2 of the normally 3 dangerous contacts will be with people who are immune. In that case, after n weeks, the number of new cases will be 1^n. In that cases, a local outbreak might effect a small number of people, but it won’t grow exponentially and will eventually die out. In this case, we say R_0 is 3 and when 67% of the population is immune, we say the population as a whole has herd immunity (against exponential growth in the number of cases).

      The hypothesis Nic Lewis has been discussing is that the people most susceptible to infection will become immune faster than the average person, leaving behind a population that is increasingly resistant to infection even though they haven’t had the disease. Under these circumstances, far fewer than 67% of the population would need to have been infected to reach “her immunity”.

  62. Geoffrey Williams

    Many thanks Rick. It’s a good piece of reasoning that I can accept.
    Layman like me never thought of that !
    Regards GeoffW

  63. Many people would like to believe that the solution to this pandemic is to protect all of the vulnerable people and let everyone else return to normal, get infected, and return to normal with few deaths. I’ve argued that we can’t effectively protect the vulnerable because everyone requires some contact with other people. In particular, those living in nursing homes live in intimate contact with a roughly equal number of staff, who spend their non-working hours with family and friend who are in the process of gaining herd immunity. Unless you test staff members almost every day (like professional athletes are demanding), some asymptomatic or presymptomatic infected staff member are going to bring the virus into nursing homes. As predicted, the surge in cases in Florida has resulted in 2.5-fold surge in cases in nursing homes and 45% of Florida’s deaths have occurred in nursing homes. Fortunately, that surge hasn’t been as large as the 20-fold surge in new cases, but it will be difficult to stamp out infections in nursing homes. Unfortunately, according to the article, the average turn around time for testing in Florida is an absurd 7-10 days, so infected patients can easily infect others before results come back.

    https://www.mercurynews.com/2020/07/24/coronavirus-outbreak-surging-in-florida-nursing-homes/

    With the surge in new cases and employers and schools wanting to test more people, this delay in test results is only going to get worse. Lab Corp said turn around time for ordinary samples was 3-5 days in June (after sample delivery).

    • There’s herd immunity and limited contact. We figured most of what not to do regarding nursing homes. Delaying herd immunity prolongs the uncertainty.

      • Ragnaar: If we have figured out most of what not to do regarding nursing homes, why are cases there increasing and still amount to 45% of deaths in Florida???

        Delaying herd immunity is what is keeping hospitals from being overrun with COVID-19 patients and our leaders from being voted out of office for letting Americans dying UNNECESSARILY. That was the objective of “flatten the curve”. (You or I may disagree with this strategy, but don’t expect any elected official stand by while Americans die without treatment. (At least one Texas hospital has resorted to triage.) Unfortunately, flattening the curve (without dramatically reducing the number of cases), means the status quo will persist for a year or two. If Nic’s hypothesis were correct, that period could be shorter, but the 1918 Spanish flu arrived in multiple waves over 3 years without producing herd immunity. The number of new cases can drop because effective herd immunity is approaching OR because of fear and public health policy.

        What happens to schools if you pursue a herd immunity strategy? Would you have sent your kids to school in April in NYC or Miami today, where about 0.5% if the people around you are known to be infectious (testing), and several times more are infectious? What about your neighbors?

  64. Coronavirus ‘baby bust’ –
    US births to plunge following social and economic trauma.
    https://www.catholicnewsagency.com/news/coronavirus-baby-bust-could-be-worse-than-expected-46252
    “two events—the surge in deaths and anxiety brought on by the pandemic, and the economic decline resulting from lockdown measures—would both cause a drop in the birthrate from “300,000 to 500,000 fewer births next year.”
    “The circumstances in which we now find ourselves are likely to be long-lasting and will lead to a permanent loss of income for many people,” Kearney and Levine wrote.

    “We expect that many of these births will not just be delayed – but will never happen. There will be a COVID-19 baby bust.”

    Two or three more global pandemics and we might reach the Paris climate goals.

  65. high viral loads in asymptomatic patients: https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2769235?guestAccessKey=46a5049b-d797-4fd0-bcdf-46d49c081d93&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jamainternalmedicine&utm_content=olf&utm_term=080620

    snippet: Findings In this cohort study that included 303 patients with SARS-CoV-2 infection isolated in a community treatment center in the Republic of Korea, 110 (36.3%) were asymptomatic at the time of isolation and 21 of these (19.1%) developed symptoms during isolation. The cycle threshold values of reverse transcription–polymerase chain reaction for SARS-CoV-2 in asymptomatic patients were similar to those in symptomatic patients.

  66. Nic Lewis: [13] Tkachenko, A.V. et al.: Persistent heterogeneity not short-term overdispersion determines herd immunity to COVID-19. medRxiv 29 July 2020

    Thank you for the link and for the updates.

    • snippet: For practical purposes, it is desirable to predict the complete
      time-dependent dynamics of an epidemic, preferably by explicitly including heterogeneity into classical well-mixed mean-field compartment models. This third approach was developed long ago (13, 18),and has recently been applied in the context of COVID-19 (28). Here, the conclusion was that the HIT may be well below that expected in classical homogeneous models.

      I was struck by the reference to past work.

      • Perhaps the most relevant precedent to today’s situation was the 1918-20 Spanish flu. The new strain appeared was apparently unrelated to anything that circulated for almost fifty years. (Some of these just over 47 had lower death rates than those just below.) R_0 was about 2 or a little less. Was herd immunity reached with less than 50% infected? Probably not after the first two waves, or even the third wave, since the same strain probably circulated in seasonal influenza for years afterwards. Clearly pandemics CAN BE slowed or effectively stopped (see some Asian countries) well short of herd immunity by a combination of fear and public health measures and return (multiple waves in 1918-20, Southern US today). The biggest difference is that SARS-CoV-2 is transmitted more easily than the Spanish flu, which caused far more fear by killing many middle aged people. Unfortunately, we can’t be sure about many aspects of the Spanish flu or even SARS-CoV-2? Was a single strain involved in all cases? Did being infected by one wave provide protection against a later wave? How long will immunity last? Will a new strain of SARS-CoV-2 evolve that can infect those who have already survived the original strain?

      • Frank
        It seems likely that if someone has been seriously ill with COVID-19 then they will remain immune for a long time. In people who had SARS, often a very serious illness, antibodies waned after a few years, but SARS-CoV-1 reactive T-cells were still present 17 years later.

        Coronavirus infections can generate T-cells that recognise particular regions of the vitus proteins with important function that are conserved across all alpha-corononaviruses. That may be an impediment to evolutionary changes enabling the SARS-CoV-2 virus to overcome immunity arising from a previous infection by it (and, potentially, by other coronaviruses).

      • Nic wrote: “It seems likely that if someone has been seriously ill with COVID-19 then they will remain immune for a long time.”

        I strongly agree, both about today and about 1918. The possibility exists that herd immunity during the Spanish flu could have been present after each wave of disease and that each wave was due to a new strain. By parallel reasoning, new strains of SARS-CoV-2 could arrive in the next few years. In the interest of candor, I brought up the uncertainty about the cause of the waves of pandemic in 1918-20.

        It is certainly possible that T-cells that evolved to recognize antigens from one strain of a virus can be re-actived to combat another strain of the same virus. However, if this phenomena is important for COVID-19, it should be important in influenza (including the Spanish flu) and other viral diseases. I’m concerned that traditional measures of “immunity” are usually defined in terms of neutralizing antibodies (not just antibodies). As you recognize, we don’t know what role such T-cells play in reducing the severity of infection and the probability of transmission (two distressingly uncorrelated phenomena).

        The importance of neutralizing antibodies can be seen in the evolution of the highly immunogenic receptor binding domain of the coronavirus spike protein, which is buried inside its three-dimensional structure (to avoid binding to antibodies) and only exposed when binding to the ACE receptor. The T-cell response is directed to all fragments of many viral proteins displayed by the MHC and recognized as being foreign. FWIW, from the medicinal chemist’s perspective (whose job it is to find molecules that bind with high affinity and selectivity to a target), I’d much prefer the job of creating molecules that target the receptor binding domain of the spike protein rather than peptides bound to the MHC.

      • Frank,
        ” The T-cell response is directed to all fragments of many viral proteins displayed by the MHC and recognized as being foreign.”
        IIRC, the cross-reactive T-cell response from common cold coronaviruses is directed against strucural protein elements, not the RBD of the spike protein. Also often against some other protein element – I forget which.

  67. more seroprevalence of health care workers in NYC:
    https://jamanetwork.com/journals/jama/fullarticle/2769322?guestAccessKey=0796ac28-872b-4821-930f-dbb61e868ace&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=olf&utm_term=080620

    Snippet: All Northwell HCP (n = 70 812) were invited: 46 117 (65.1%) were tested as of June 23, 2020. The final consented sample of 40 329 (56%) (median age, 42 [interquartile range, 31.5-54.5] years) included 73.7% women, 16.0% Black, 0.8% multiracial, and 14.0% Hispanic HCP (Table 1) and 28.4% nurses and 9.3% physicians (Table 2).

    Overall, 5523 of 40 329 (13.7% [95% CI, 13.4%-14.0%]) HCP were seropositive. Of 6078 with previous PCR testing, 2186 (34.8%) were PCR positive. Of these PCR-positive HCP, 2044 (93.5%) were also seropositive, leaving 142 (6.5%) with negative antibody test results. Of the 3892 PCR-negative HCP, 3490 (89.7%) were also seronegative. Of 34 251 with no PCR testing, 3077 (9.0%) were seropositive (Table 2).

    • jungletrunks

      Surprisingly, it looks like herd immunity will be put to the test in NY. Cuomo decided to allow schools to open in the fall. I’m sure NY teacher unions have gone apoplectic. There’s probably a back story.

  68. Research Letter May 20, 2020
    Nasal Gene Expression of Angiotensin-Converting Enzyme 2 in Children and Adults
    JAMA. 2020;323(23):2427-2429. doi:10.1001/jama.2020.
    Editorial Nasal ACE2 Levels and COVID-19 in Children
    Children account for less than 2% of identified cases of coronavirus disease 2019 (COVID-19).1,

    • Interesting. But the difference (ratio) in ACE2 nasal gene expression between young children and adults was only about a factor of 0.6, which isn’t that large, and for older children the difference was only about half as large.

  69. There seems to be some evidence now that Sweden suffered less economic damage during Covid than many European countries. Evidence that Sweden’s policy response to the epidemic as better? Maybe.

    • But I still say that the cross-country comparisons, certainly at this early stage, are more an exercise in confirmation bias than anything else.

      • Has Sweden has suffered less economically than the arguably the best comparisons (Nordic countries)? Norway, Finland, and Denmark. It also isn’t clear to me that Sweden isn’t shut down more at this point then those other countries. I’d like to see conclusive evidence if anyone has any.

        What is clear is that at this point, Sweden still has a higher infection rate and a comparable death rate then those countries – after a substantial period of much higher death rates and infection rates thst may well come with years of higher serious sequallae from covid infections.

        It isn’t clear, but there is evidence to suggest, that one way that Sweden kept its healthcare system from being over-burdened was by NOT moving sick and infectious older people into hospital settings but I instead leaving them in aged housing settings. That is a defensible policy choice, but it is a choice that would not likely be accepted in other counties. It will be intersting to see if people so *concerned* about the policies with what to do with infectious oder people in NY will be jumping all over Sweden for its policies for dealing with infectious older people (my magic 8- all says “not likely.”)

        What isn’t clear is whether the potential advantages for Sweden from a fast and wide approach to infections will ever become manifest. Vets only people should be circumspect and only judge after considerably more time has passed. Perhaps Sweden will manifest benefits – but to the degree that treatments improve and if a vaccine becomes widely available – they may have taken on a material cost in lived and illness for perhaps no payoff.

        Ultimately, that will be up to the people of Sweden to decide. And meantime, advocates will leverage the outcome in Sweden, no matter what they are, to confirm their ideological biases.

    • From that thread:

      –snip–
      Abstract
      The basic reproduction number Ro is the number of secondary cases which one case would produce in a completely susceptible population. It depends on the duration of the infectious period, the probability of infecting a susceptible individual during one contact, and the number of new susceptible individuals contacted per unit of time. Therefore Ro may vary considerably for different infectious diseases but also for the same disease in different populations. The key threshold result of epidemic theory associates the outbreaks of epidemics and the persistence of endemic levels with basic reproduction numbers greater than one. Because the magnitude of R0 allows one to determine the amount of effort which is necessary either to prevent an epidemic or to eliminate an infection from a population, it is crucial to estimate Ro for a given disease in a particular population. The present paper gives a survey about the various estimation methods available.
      –snip–

      https://journals.sagepub.com/doi/abs/10.1177/096228029300200103

  70. Nic: I was looking at the NYT US state data for COVID-19 at the link below and noticing that most states have their highest number of new cases early or late in the pandemic, but that almost no states have seen a “surge” at both ends of the pandemic. It sure looks like one surge has made it much less likely for a second surge to occur, consistent with the idea that one surge has brought many states a significant way towards herd immunity. (One surge, of course, may have effected behavior and policy too.) Louisiana is one state that appears to have experience a modest early surge, but is now experiencing a new surge. The attractive feature of the NYT data, is that you can then look at all of the county data and see if some LA counties experienced an early surge while other LA counties experienced a late surge or whether the state as a whole experienced two surges. Focusing on just the most populous counties, Orleans experience only an early surge and Baton Rough (at the opposite end of the state) experienced mostly a late surge. Louisiana is the hardest hit US state, with 2.8% of people testing positive for virus, but I suspect more cases were missed during early surges.

    Virginia (where I live) is somewhat of an exception, with new cases peaking in late May.

    Scanning all of the data, I’m surprised so many localities have ended up near the US average (about 1.5%). The top ten states in terms of cumulative cases include 7 late surging conservative states (LA, AZ, FL, MS, AL, SC and GE), and 3 early surging liberal states (NY, NJ and RI, which likely missed more cases due to limited testing), but cumulative cases are between 1.8% and 2.8% in all ten. There are some states and many counties where there has never been a surge. The hardest hit counties with at least 1,000 cases (Yuma and Santa Cruz, Arizona) have cumulative viral positivity of 5.7% and 5.4%. I’m not sure what the best factor (or range of factors) is appropriate for estimating seropositivity from viral RNA positivity.

    All of this gives me the impression that there is an approaching upper limit.

    https://www.nytimes.com/interactive/2020/us/coronavirus-us-cases.html?action=click&module=RelatedLinks&pgtype=Article#states

    One of the papers I surveyed on the Spanish flu asserted that R_0 for each local wave of the pandemic in the US was about the same and deduced that those populations were not near herd immunity. If I understand correctly, if one is halfway to herd immunity, the maximum R(t) that can be observed during a surge is one-half of R_0. If there were two surges with nearly equal doubling time anywhere, that might rule out a low herd immunity. Could the skewness of the distribution of surges be used to demonstrate a low herd immunity?

    Best wishes, Frank

    • Frank –

      Not that you asked for my opinion….

      Assuming that heterogeneity affects the HIT, then behavior affects the HIT as behavior affects heterogeneity. For example, mask wearing: In NY the infections spread quickly and when they did, people started wearing masks and subsequent to that, the rate of infections decreased. And presumably the rate of mask-wearing has remained fairly high (I know it has where I live in the Hudson Valley). Although I don’t know about mask-wearing in Arizona, I’d be willing to guess that mask-wearing was minimal early in the pandemic, and once community spread started happening on a large scale there, people stated adopting mask-wearing behaviors (and then rates of infection started dropping again).

      It certainly seems to me that the prevalence of infection would affect the attack rate, but I don’t see any reason why that would be the only, or even the determinative factor and further, it seems to me that there are a lot of interaction effects or mediators or moderators that drawing a direct line of from immunity to the HIT so simplifies the dynamics so as to be fairly meaningless. That would help explain why the infections seem to rise and fall at different times in different places, and seemingly why infection rates Peter out at difference prevalence levels in different communities.

      • Joshua: If I understand correctly, epidemiologists use R_0, based on the initial rate of exponential growth to calculate herd immunity so that even when behavior/fear and policy return to normal, exponential growth of cases will not occur. Transmission is effected by behavior/fear and policy, but herd immunity assumes these factors will return to normal. Air pollution, SARS, MERS, COVID and a greater sense of societal responsibility have made wearing masks in some Asian societies commonplace. I doubt that will happen after COVID in the US.

        When trying to model the effect of fear and public policy on the 1918-20 pandemic, one paper I read modeled the effect of fear as being proportional to the current number of deaths. In that case, fear was much more tangible because everyone was equally vulnerable, not just the elderly. The big difference between COVID-19 and the Spanish flu could be that that the latter caused more fear and was less easily transmitted (R_0 1.6-2.0?). As best I can tell, these factors plus public policy brought the pandemic to a halt for multiple months several times short of herd immunity, and another wave struck when normal behavior and policy resumed.

      • Frank –

        > so that even when behavior/fear and policy return to normal, exponential growth of cases will not occur.

        But what rate of transmission will occur between “exponential growth” and stabilizing at a HIT?

        Not sure if I’ve linked this before or not?

        https://science.sciencemag.org/content/early/2020/06/22/science.abc6810

      • Joshua asked: “But what rate of transmission will occur between “exponential growth” and stabilizing at a HIT?”

        Sorry for the sloppy terminology., which I confess I don’t properly understand. Let’s pragmatically define “exponential growth” as an R(t) big enough that the difference between linear growth and exponential growth is significant in four to eight cycles of infection followed by transmission, perhaps a month. 1.2^4 = 2.07 modest deviation from linearity. 1.2^8 = 4.3 distinctly non-linear. Of course, everything having to do with pandemics (and compound interest) is really an exponential (increasing or decreasing) process.

        Suppose one person is infecting four new people in the early stages of a pandemic (via eight contacts with a 50% probability of transmission if you like). When you are halfway to HIT, a similar person will be infecting four people, but two of them will resistant and the exponential growth rate will be cut in half. The same thin happens if fear and public policy reduces to average number of potentially infectious contacts by 50%.

        Suppose two of those four people who would normally be infected are relatively resistant to the virus and only one of them gets sick enough to infect others. That means only three new infections are created. As the pandemic proceeds, 1/2 of the relatively easy to infect people will be immune when only 1/4 of the relatively hard people to infect are immune. With four contacts, one contact will be relatively easy to infect, the other easy to infect contact will be immune, two contacts will be relatively hard to infect and “1/2 contact” will be immune and the other “3/2 contacts” will have a 50% chance of getting infected, leading to 7/4 new cases (instead of 2 new cases with equal susceptibility).

        And you can divide you population up in to other groups: superspreaders and non-superspreaders, those who work with dozens of people daily (cashiers at grocery stores) and those who work from home. When you start doing that the question is whether these properties are randomly distributed or are some correlated. Do your superspreaders become immune relatively early in the pandemic and become depleted? This pandemic is probably “all about the superspreaders”. If they produce enormous levels of viral RNA in their respiratory tract, does that mean they were relatively susceptible to infection in the first place? What about somebody with cross-reactive T-cells leftover from a coronavirus that causes a common cold?

        There are two many questions without answers. Until we see a strong “second surge” in a community with a high seropositivity, we won’t know for sure what is going on. The longer it takes to identify such a community, the less likely it will happen, but it is far too early to assume behavior has returned to normal. Colleges re-opening would be a good test.

      • Joshua –
        “But what rate of transmission will occur between “exponential growth” and stabilizing at a HIT?

        https://science.sciencemag.org/content/early/2020/06/22/science.abc6810

        This model has an extremely restricted type of population heterogeneity – just age-structured mixing rates. So it’s behaviour is probably not very realistic, except relative to simple compartmental models that assume a fully homogeneous population.

      • Steven Mosher

        “Assuming that heterogeneity affects the HIT, then behavior affects the HIT as behavior affects heterogeneity.”

        and more importantly there is NO SINGLE HIT.
        it cannot be used for policy.

        1. The “connectivity” of people is a convenient abstraction. It is not measurable in every community. So, folks try to get at it through
        proxies, like “mobility data”, or average people in a household,
        The folks who come closest to measuring it are koreans who track
        down through digital records and CCTV who comes into contact with
        who. there is no “one size fits all”

        2. “lockdowns”. People “measure” POLICIES, they do not measure
        COMPLIANCE. and even when they measure policies they do so
        crudely. Like a point scheme: 1 point for closing schools.
        Side not, Sweden ranks HIGH on these scales. basically having
        cops enforce the no more than 50 people policy.
        Compliance is important because even in a place like korea we
        continue to get Super spreaders. WHY?
        Well, it is simple. Some group of people get together in a close space
        for an extended period of time without masks. VIOLATING the policy.
        basically, you cant measure compliance. You can only track down
        when compliance is low.

        3. “natural” immunity. or immunological ‘dark matter”. because 1 and 2
        are uncertain and unmeasurable, there will ALWAYS be a
        possibility for “some other cause” some other factor.
        In jumps “cross reactivity”. At this point
        A) its a speculation
        B) we dont know if it is uniform ( data suggest NOT) since
        in congregate settings we get attack rates going from single
        digit values to 90%+

        4. Behavior changes PRECEDE policy decisions. In some cases
        people change their behavior IN ADVANCE of policies. This was
        seen in early san Francisco data where companies move to work from
        home and restaurant traffic dropped dramatically.

        With these unknowns it is possible to forecast a wide variety of HIT.

        The question is : What is the HIT in your state, your city, your neighborhood your circle of connections.

        1. you need to know this to make your personal choice
        2. city officials need to know this to make city policy
        3 state officials need to know to make state policy.

        and all those factors will vary across populations.

        The pre cautionary approach is to assume.
        random mixing, no dark matter
        and apply standard public health measures.

        This is necessarily pessimistic and should be revisited locally.

        as infections go down, measures can be relaxed.. no increase?
        relax more. 100% ad hoc. trial and error. measure and correct.

        because you will never calculate a HIT at the spatial level at which policy
        can be made and measured.

      • Steven Mosher: The question is : What is the HIT in your state, your city, your neighborhood your circle of connections.

        Interesting post on the whole, but with as much travel over all distances as Americans engage in, there is probably no way to separate states, cities and neighborhoods. Here in CA we still have travel from San Francisco to San Diego and points in between; there is still travel from Denver to San Diego, and of course Las Vegas in between. Neighborhood level is not only too fine for modeling, but too fine for county-wide and state-wide planning.

        At some level, perhaps county level, you have to prepare to respond flexibly to neighborhoods that differ significantly, and unpredictably, from the county average. If we were to achieve “herd immunity” for a county, the county should prepare for places that have outbreaks and other places that do not.

      • Steven Mosher

        Yes mathew with the mobility in the US it makes it very tough.

        The over arching point is this.

        The is no single HIT and I think its a mistake to even try to estimate it.

        What works is basically a pragmatic approach.

        1. you need testing capacity that is 100X of your actual disease burden
        2. you need hospital bed and ICU capacity to handle the worse case
        ( assuming some figure for case multiplication.
        3. you need Rt to be nor more than 1.

        The DIALS you need to turn to achieve this may be different in every
        local. There is a lot of trial and error. I see Korea making adjustments
        every day.

        Outbreak in gyms? close gyms
        Outbreak in night clubs, require “sign in” ( for tracking) and masks.
        its basically wack a mole

        This approach is known as HAMMER and dance.

        2-3 week hard lock to get numbers down and then loosen and
        tighten.

        GRADUALLY, watching the numbers.

        A lot of what I see in the US is a bang bang approach.
        open close, open close.

        with no metric driving the process.

      • Steven Mosher:

        Behavior changes PRECEDE policy decisions. In some cases
        people change their behavior IN ADVANCE of policies.
        —————————————————
        I’ll go with your first sentence above.
        —————————————————–
        …“lockdowns”. People “measure” POLICIES, they do not measure
        COMPLIANCE.
        ——————————————————–
        Restrictive policies create their own push back. In the end people will do what they want. But government can control hospitals and schools. The both of those show governments at their worst. Those in charge swing sledgehammers at the problem. Their targets unintentionally again are the poor and vulnerable. But trust Comma Law Harris to save us. (This phonetic pronunciation is included to help you to not get canceled. Those of us with hard to pronounce names never thought you were as racist until we became woke.)

        I don’t know why you waited to sum things up for us. You’ve described reality at the 85% level. But you haven’t committed to solving things economically. Like natural gas to nuclear power.

        I still don’t care what South Korea is doing. They are not us. And never will be. They have been cursed since before the Korean War. They ran a lab experiment. That answer will not be deployed in the United States. And it should not be. You don’t get to be great by being South Korea.
        ———————————————–
        Well, it is simple. Some group of people get together in a close space
        for an extended period of time without masks.
        ———————————————–
        You’re still in touch with reality. Most of the time, effective herd immunity is low. People by whatever method, know this. Overall you’re saying this: At high resolution, we don’t have a clue and will never have one. Lewis at low resolution is disagreeing with others at low resolution.

        When you have governments operating at low resolution, you get government with its typical results. When you have governments operating at high resolution, you get China and fascism.

      • Matthew R Marler

        Steven Mosher: What works is basically a pragmatic approach.

        It is not pragmatic to aim for too much refinement. There may be enough evidence to provide a rough estimate of the average HIT over a large enough region, but it’s hopeless on a fine scale such as neighborhoods. The best that you can realistically hope for is something along the lines of: these sectors (a few states or cities, for example) have achieved herd immunity, but we don’t know about the other sectors (elderly in nursing homes), so we ought to prepare for localized outbreaks.

      • I’d like to reinforce Mosher’s comments on compliance. I started looking into some of the references that the CDC used to establish that masks were not effective – and which the CDC relied upon in the early days of this pandemic. In clinical trials, data is often analyzed on an “intent-to-treat” basis. If half of the patients drop out of a clinical trial with a new drug because of side effects, we want to know whether there was a statistically-significant benefit for the entire “intent-to-treat” group, not just those who completed treatment. In the case of two studies testing the ability of masks to prevent influenza in a college setting, the reviewers cited by the CDC cited only the insignificant effect of masks on everyone who volunteered to wear them (the intent-to-treat analysis) and ignored the significant protection received by those who self-reported wearing their masks as directed most of the time!

        If the government were to mandate masks for everyone, then the entire population is the “intent-to-treat” group. IF compliance by ordinary citizens during this pandemic were no better than among college students threatened by influenza, the “intent-to-treat” analysis showing no statistically significant benefit might be relevant to advising policymakers. I’d personally hope compliance would be better, and would pay more attention to the benefits received by those who actually wore the masks as requested. For individual citizens motivated to wear masks – if told masks provided some protection – the CDC’s advice initially was grossly wrong.

        I didn’t look into all of the roughly ten studies that were used by the CDC to make recommendations about masks before this pandemic arrived. It makes perfect sense to me why they changed their recommendation.

    • Frank,
      “If I understand correctly, if one is halfway to herd immunity, the maximum R(t) that can be observed during a surge is one-half of R_0.”

      I don’t think that follows, if by “halfway to herd immunity” you mean that half the number of people who will become infected before the HIT is reached have become infected. But maybe you didn’t mean that.

      “Could the skewness of the distribution of surges be used to demonstrate a low herd immunity?”

      I’m not sure, but I’m somewhat doubtful.

      • Nic: Thanks for the reply. Yes, “halfway to herd immunity” may need to be defined in terms of R(t) being halfway from R_0 to unity and that may not be the same halfway in terms of infections. (I haven’t invested the time to learn and “experience” the math that models this problem, and sometimes I feel “crippled”.)

        Has anyone been able to followup on the fate of people who experience high infection rates in special environments? Were the non-infected survivors of a cruise ship or the Washington choir or hard hit areas of NYC relatively resistant to getting infected afterwards? It would probably be hard to get useful data, but if a few hundred NYCers have relocated to Miami, perhaps we could learn something.

        FWIW, I’m beginning to have interesting ideas about aerosol transmission. Studies with influenza showed aerosols are created by sheer forces in the narrowest passages in the lungs and more infectious viruses are ejected through ordinary breathing than coughing. Seasonal influenza happens when relative humidity is low. Given their high surface area, aerosols are obviously quickly modified by low humidity. Viruses could remain suspended in stagnant air for longer in low humidity. And when you are sick, a shower or a humidifier helps open your breathing passages. Dry air may constrict air passages, increase shear, and produce more aerosols. Superspreaders could produce more infectious aerosols than average by this mechanism. I could even cherry-pick Santa Cruz and Yuma counties in arid Arizona as having the highest cumulative case load, but Miami-Dade in humid Florida isn’t far behind. Enough wild speculation.

      • Frank,
        You may find these papers of interest regarding transmission mechanics doe COVID-19 and flu, if you haven’t seen them: Basu, medRxiv https://doi.org/10.1101/2020.07.27.20162362; Nitikin et al Adv in Virology http://dx.doi.org/10.1155/2014/859090 ; Paris et al bioRxiv https://www.biorxiv.org/content/10.1101/2020.07.29.227389v1.full.pdf

      • Nic: Thanks for the papers on transmission mechanics. For one time, at least, I appear to have made some sensible deductions. So I’ll go one step further and speculate that low humidity responsible for increasing the marginally increasing transmissibility influenza during the winter season enough that the threshold for herd immunity is crossed in the fall and recrossed in the spring. In the US, 30 million get seasonal influenza and this could be the number of people who have lost immunity with the passage of time or new people entering areas where the population is dense enough to sustain a seasonal pandemic. In the fall, as the low humidity makes the virus more transmissible via aerosol, the threshold for herd immunity is crossed, creating a very slow growing epidemic that peaks in February and ends as the number of immune people increase and as humidity begins to rise. Compared to less arid locations, more arid regions would have a higher HIT, which means that a local humidity controlled seasonal epidemic could occur in a variety of climates, but seropositivity would be higher in the arid regions. Since transmission likely occurs indoors, indoor heating creates the low humidity. Pandemic influenza (and coronavirus) ignore seasonal changes in humidity until they approach herd immunity.

        Looking further, this relationship between higher transmissibility/stability appears to be true for most enveloped viruses (which are surrounded by fragile host cell membrane). Polio, a non-enveloped virus is more stable at high humidity and epidemics struck during the summer.

        https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3457514/

        “The extent to which an aerosol evaporates depends on its solute content and RH, and the final size can be calculated using mathematical models based on thermodynamics and fluid mechanics (32, 39, 44). Small droplets (less than ∼30 μm) reach their equilibrium size in less than 1 s.” (I assume that the solids that would be left behind if all the water in fine aerosols evaporated would be somewhat hygroscopic enough prevent complete dehydration, but the particles lightened by evaporation would remain suspended for longer.

        Probably the most important thing to understand is what makes someone a super-spreader. I’ve read that sheer forces rip aerosol droplets off of the surface of narrow breathing passages. Obviously a high viral titer in those passages would make a difference, but many people get high viral titers without infecting others. The viscosity of the liquid wetting the surface of the lungs could matter. Depth and rate of breathing could matter.

        (I suspect none of these ideas are original, but I don’t recall reading about them.)

      • Frank
        “Since transmission likely occurs indoors, indoor heating creates the low humidity.”

        Doesn’t air conditioning also create low humidity, condensing out water vapour?

        “Probably the most important thing to understand is what makes someone a super-spreader. I’ve read that sheer forces rip aerosol droplets off of the surface of narrow breathing passages. Obviously a high viral titer in those passages would make a difference, but many people get high viral titers without infecting others.”

        I would expect viral titer to make a difference. However, I think the explanation of super-spreading is much more that some people are connected with a much larger number of other people than average, and perhaps engage in longer and/or closer contact with them, particularly in noisy indoors settings like bars, clubs, pubs, musical events, where people tend to speak (or sing) loudly and in extended closer than normal contact with others. They are thus both more likely to become infected and more likely to infect a large number of others.

      • Nic: Your comments about super-spreaders make perfect sense to me, but they don’t explain why super-spreading is more important in the case of COVID than it appears to be with influenza (to the best of my knowledge).

        Do your comments offer any hope that those likely to become super-spreaders are becoming immune faster than ordinary people? If R_0 were 3 and 2/3’rds of the likely super-spreaders were immune, the pandemic would be over. I’d certainly endorse that version of your hypothesis as being sound.

        Unfortunately, I suspect that being a potential super-spreader is mostly not an innate trait. I think uninhibited loud talking in a bar or at a party makes a person temporarily a potential super-spreader, or singing in church, or exercising in a gym, or talking [loudly] in a crowded college classroom, auditorium or restaurant. Do these activities make the majority of people into a potential super-spreader (I’d guess yes), or is there a sub-population of people who can be depleted early in a pandemic, and allow the rest of the population to safely participate in these activities? I’ll admit that some personality types, being a “hugger” for example, do make one more likely to permanently be a potential super-spreader (and possibly selectively depleted early in a pandemic).

        One solution to super-spreading via aerosols is better ventilation and air-filtration. If cumulative exposure to aerosols is critical to establishing an infection, I’d guess that twice the ventilation would cut the number of those infected in a super-spreading event in half. On a societal scale, that could have a major impact.

      • Frank, I largely agree with your analysis.

        I agree that being a potential super-spreader is mostly not an innate trait, in a biological sense. However, people who are super-spreaders very likely attend considerably more of the sort of events at which lots of spreading occurs, and maybe tend to be in closer than usual physical proximity to others at such events, and so will be preferentially infected early in the epidemic. That will, later in the epidemic, make attending such events less associated with becoming infected, but it will still be a relatively high risk thing to do.

        I would certainly expect super-spreaders to become immune faster than other people, as they will tend to be infected earlier. But remember that someone’s degree of spreading (infectiousness, in my terminology) is on a continuum – it’s not a case of just super-spreaders and ordinary people, rather a probability distribution with a long tail. Since government measures have typically banned social events in which super-spreading tends to occur, fewer potential super-spreaders will have become immune than would otherwise be the case. However, many will have been infected before such measures took effect (or people became more cautious of their own accord), and super-spreading in environments such as hospitals, care homes, food processing plants, worker dormitories, etc. has continued to a considerable extent.

        One would expect super-spreading of influenza, particularly in social situations, to be much less frequent, because peak viral shedding occurs 1-3 days after symptom onset (https://onlinelibrary.wiley.com/doi/full/10.1111/irv.12464). By contrast, COVID-19 is strongly transmitted for a period, of up to several days, before symptom onset, when an infected person doesn’t even know they are ill.

        Agree with your comments on ventilation and air-filtration.

  71. Abstract
    SARS-CoV-2 is difficult to contain because most transmissions occur during the pre-
    symptomatic phase of infection. Moreover, in contrast to influenza, while most SARS-CoV-2
    infected people do not transmit the virus to anybody, a small percentage secondarily infect large
    numbers of people. We designed mathematical models of SARS-CoV-2 and influenza which link
    observed viral shedding patterns with key epidemiologic features of each virus, including
    distributions of the number of secondary cases attributed to each infected person (individual R0)
    and the duration between symptom onset in the transmitter and secondarily infected person
    (serial interval). We identify that people with or influenza infections are usually
    contagious for fewer than two days congruent with peak viral load several days after infection,
    and that transmission is unlikely below a certain viral load. SARS-CoV-2 super-spreader events
    with over 10 secondary infections occur when an infected person is briefly shedding at a very
    high viral load and has a high concurrent number of exposed contacts. The higher predisposition
    of SARS-CoV-2 towards super-spreading events is not due to its 1-2 additional weeks of viral
    shedding relative to influenza. Rather, a person infected with SARS-CoV-2 exposes more people
    within equivalent physical contact networks than a person infected with influenza, likely due to
    aerosolization of virus. Our results support policies that limit crowd size in indoor spaces and
    provide viral load benchmarks for infection control and therapeutic interventions intended to prevent secondary transmission.

    https://www.medrxiv.org/content/10.1101/2020.08.07.20169920v1.full.pdf

    • Joshua
      Thanks for the link, however it didn’t work for me. I think one now needs to use https://www.medrxiv.org/content/10.1101/2020.08.07.20169920v2.full.pdf

      • Joe - the non epidemiologist

        footnote/citation #23 makes reference to a mask effectiveness study.

        Unfortunately the study is in french which I cant read. Any links to comparable studies in english

        thanks

      • Joe - the non epidemiologist

        Second comment
        The study implies that aerosols are the more likely mode of transmission instead of droplets. If so, do masks provide any reduction in risk of transmission? Most of the exhaled air is escaping out of the vent holes of the mask (notice your glasses fogging up – that is the exhaled air escaping).

      • Nasal spray, or introduced through HVAC systems UCSF lab created tiny antibodies maybe better than mask as prophylactic:

        https://www.biorxiv.org/content/10.1101/2020.08.08.238469v1

        Abstract
        Without an effective prophylactic solution, infections from SARS-CoV-2 continue to rise worldwide with devastating health and economic costs. SARS-CoV-2 gains entry into host cells via an interaction between its Spike protein and the host cell receptor angiotensin converting enzyme 2 (ACE2). Disruption of this interaction confers potent neutralization of viral entry, providing an avenue for vaccine design and for therapeutic antibodies. Here, we develop single-domain antibodies (nanobodies) that potently disrupt the interaction between the SARS-CoV-2 Spike and ACE2. By screening a yeast surface-displayed library of synthetic nanobody sequences, we identified a panel of nanobodies that bind to multiple epitopes on Spike and block ACE2 interaction via two distinct mechanisms. Cryogenic electron microscopy (cryo-EM) revealed that one exceptionally stable nanobody, Nb6, binds Spike in a fully inactive conformation with its receptor binding domains (RBDs) locked into their inaccessible down-state, incapable of binding ACE2. Affinity maturation and structure-guided design of multivalency yielded a trivalent nanobody, mNb6-tri, with femtomolar affinity for SARS-CoV-2 Spike and picomolar neutralization of SARS-CoV-2 infection. mNb6-tri retains stability and function after aerosolization, lyophilization, and heat treatment. These properties may enable aerosol-mediated delivery of this potent neutralizer directly to the airway epithelia, promising to yield a widely deployable, patient-friendly prophylactic and/or early infection therapeutic agent to stem the worst pandemic in a century.

  72. -snio-

    This package implements models of generalized SEIRS infectious disease dynamics with extensions that allow us to study the effect of social contact network structures, heterogeneities, stochasticity, and interventions, such as social distancing, testing, contact tracing, and isolation.

    -smip-

    https://github.com/ryansmcgee/seirsplus

  73. -snip-

    Coronavirus disease 2019 (COVID-19) is the disease caused by the novel coronavirus known as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).

    This interactive modeling tool was developed to help individuals explore the impact that proactive SARS-CoV-2 viral testing can have on mitigating outbreaks in workplaces, universities, and other group settings. We’ve focused our efforts on environments like workplaces and universities, because these settings generally involve prolonged, close contact between individuals, which makes them susceptible to SARS-CoV-2 outbreaks.

    -snip-

    https://www.color.com/covid-19-outbreak-model

  74. Joshua: https://www.color.com/covid-19-outbreak-model

    Thank you for the link. Remember that with this set of models, as with the others (not the Google models, which are more complex), the relationships between real world interventions and model parameter changes are assumed, not estimated.

  75. Mathematical Models in Understanding COVID-19
    AUGUST 10 – 12, 2020

    http://www.ipam.ucla.edu/programs/workshops/mathematical-models-in-understanding-covid-19/?tab=overview

  76. Steven Mosher

    unlike NY prisons

    https://news.yahoo.com/san-quentin-coronavirus-disaster-exposes-120059867.html

    Guess they have unlucky Tcelle

  77. Pingback: Why herd immunity to COVID-19 is reached much earlier than - coronawood

  78. Steven Mosher

    Spain?

    weird if spain hit herd immunity

    wassup?

    https://www.bbc.com/news/world-europe-53747852

    here is a clue

    if you want to model this thing you have to explain cases like

    Spain, honk kong, korea, japan, Singapore, Vietnam.

    • Steven Mosher: weird if spain hit herd immunity

      Especially if, as you wrote, nationwide herd immunity is meaningless.

    • This is the way I’m thinking about it. Not a model.

      Cases for first waves probably are going to come down to timing of institution of preventive measures and the extent of the measures after population density and amount of social contact are factored. Even a few days could make a huge difference in the number of active cases because it can reduce the contact that active spreaders have with other people. This might account for differences in prison populations and other enclosed populations. This will be very hard to predict with a model because the timing and early numbers of active spreaders couldn’t be measured in most locales because of lack of testing.

      Most of the Asian countries reacted quickly and with high compliance for mask wearing and social distancing. Spain, Italy, and New York reacted too slowly so it quickly got out of control.

      No matter what the experience in the first wave, after the first wave when cases start to come down significantly, there will be a tendency to loosen up. Voluntary compliance will be less and governments will reduce mandates. Then a second wave will start. Some people and governments will be scared back into preventive measures. If the first wave was small, the second wave could be bigger. If the first wave was big, the second wave could be smaller.

      The southern and rural states of the US from a countrywide perspective could be seen almost as a large second wave.

      After the second wave almost everybody will think the worst is behind. As cases drop in the second wave, things will loosen again and there will be a third wave. If the first and second wave were large, this wave may be almost non-existent.

      Sweden since it still has in place social distancing and crowd measures probably is at the tail end of wave 1. Since wave 1 was large, wave 2 will be smaller.

      Vaccines and/or a continued and rigorous surveillance for outbreaks could reduce numbers a lot.

      Mortality rates by cases are mostly going to vary by age distribution in the population but could reduce with improved treatments over time. There could be genetic factors involved also.

  79. Dr Davis’ summary of yesterday: https://thomasglassphd.com/category/daily-briefings/

    I don’t share Dr Davis’ despair over a lack of “national leadership”.

    • How do you see national leadership on dealing with the pandemic as being manifest?

      There seems to be some evidence that wide availability of N95 masks could help lower the rate of infections with zero negative economic impact. Why aren’t N95 masks widely available? Wouldn’t national leadership make that happen? Would it be a difficult accomplishment to achieve with good national leadership?

      Why are tests on average taking so long to get results? Wouldn’t good national leadership have led to faster turn-around time on test results?

      Why did it take so long to get testing scaled up? Wouldn’t good national leadership have at least taken responsibility to ensure that happened quickly? How do you have good national leadership if they lie about the availability of tests and don’t take responsibility for making sure that testing scaled up quickly?

      Again, where have you seen good quality national leadership in dealing with COVID-19?

      • Maybe, I’ll grant you, in development of a vaccine (although I think there have been legitimate criticisms on that front)?

      • Joshua: How do you see national leadership on dealing with the pandemic as being manifest?

        I do not despair over our Federal system, with the 9th and 10th amendments to the Constitution that give most authority over safety and health to the states and to the people.

        If National Leadership had been as the Govs of Nevada, Illinois, New York and Michigan, that might have been worthy of despair.

        It may be an important lesson that the professionals at the CDC and FDA bungled at the start; that Pres Trump was called xenophobic and worse over shutting down some international travel earlier than the Democratic leadership thought wise; that the US Navy hospital ship and National Guard field hospitals were not actually needed in NYC (and likewise in Chicago); that Anthony Fauci, the single most respected man on this topic, contradicted himself and foolishly praised NY Governor Cuomo; that the (mostly Republican) states that shut down the least had the lowest economic and job losses; that a man as energetic as Dr. Didier Raoult chose not to conduct a proper clinical trial when he had all the means available to him (I put up a link to his most persuasive non-RCT yet reported on — it is a thorough report, unlike previous superficial sketches.)

        The US thought it had plenty of manufacturing capacity for test kits and such, but seriously underestimated the health costs of dependence on China for supplies. It might have been nice if National Leadership had commanded someone to manufacture high quality test kits faster, but the companies at the start of the product chain were in China, and could not quickly be moved to or built in the US (partly because the permitting processes for chemical plants at local, state and federal levels operate so slowly.)

        The response to the disease has been remarkably fast compared to pandemics of the past. The problem is the disease.

      • Seems to me that you didn’t attempt to actually describe anything as national leadership. Am I right about that?

        Perhaps limiting travel with China – which was poorly executed, with high levels of travel continuing and circumstances that would exacerbate spread, and apparently didn’t have much effect in limiting spread (given analysis thus far as to which strains were spreading early on in the US) is an area where you saw national leadership?

        Perhaps limiting travel with Europe – which likewise was poorly executed (e.g., confusion and people rushing to get back into the country in very crowded conditions and traveling to 3rd countries to circumvent the restrictions, etc.) – and came too late to actually prevent early and broad community spread was an area where you saw national leadership?

        Maybe building hospital capacity or ramping up the manufacture of ventilators?

        It seems you have no expectation of national leadership – which is certainly your right – but it should be noted that most people around the world do look to national leaders to…er…provide national leadership during a national emergency.

        I notice that you didn’t address any of the issues I raised as an example of a *failure* of national leadership. Is that because you don’t have any expectation of national leadership in those areas or is just that you missed spelling out how national leadership was actually provided related to those issues?

      • > The US thought it had plenty of manufacturing capacity for test kits and such, but seriously underestimated the health costs of dependence on China for supplies.

        Can you describe how national leadership was provided in dealing with that failure to accurately evaluate the actual manufacturing capacity? Particularly in light of the many examples of people pointing out the insufficiency in manufacturing capacity before the pandemic hit and early on after it hit but before virtually anything happened on the national level to deal with the insufficient manufacturing capacity?

        I’ll point out that there was a similar failure to effectively address the insufficiency of PPE, and like the insufficiency with the testing, that problem is still ongoing six months after the pandemic hit.

        > The response to the disease has been remarkably fast compared to pandemics of the past. The problem is the disease.

        Can you describe in which ways the comparative “remarkable” response due to a difference in national leadership from past responses?

      • Do you think that flat out lying about the availability of testing, and continuously failing to meet the promises made about testing capacity, sre indications of good national leadership, indications of a *failure* of national leadership, or simply irrelevant as a way to measure the quality of national leadership?

      • Joshua: Seems to me that you didn’t attempt to actually describe anything as national leadership. Am I right about that?

        Yes. I don’t despair over the lack of national leadership in our Federal System.

        Pres Trump did promise to support governors’ efforts, while appropriately leaving the initiative to them — and he backed that up with shipments of federal assets. He also promoted stronger govt-private cooperation in vaccine and medicine development. Those were good. But “national leadership” couldn’t solve the supply chain bottleneck. I give thanks that Whitmer, Cuomo and Newsom are not “national leaders”. Trump’s executive order prioritizing the manufacture of ventilators was “ill advised”, but it was “advised” by experts who foresaw a shortage.

  80. I got it. Herd immunity is variable. And I am stealing that from a couple of contributors here. Who says my being here is a waste of time?

    It is variable for some of the same reasons transient climate response is variable. Some of the limits of knowing TCR also apply to herd immunity.

    There is nothing new under the Sun.

  81. interim analyses of two vaccine trials: https://jamanetwork.com/journals/jama/fullarticle/2769612?guestAccessKey=5bc9c9c9-9a9d-4c8f-9cb7-47c2b531b226&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=olf&utm_term=081320

    I wonder about the point of publishing this. It seems only to provide encouragement that work is ongoing, and two additional vaccines show promise.

  82. Surge 1 and Surge 2 in Houston Methodist Hospital System: https://jamanetwork.com/journals/jama/fullarticle/2769610?guestAccessKey=c80ee6a9-e0f0-414d-b937-a88bd1e6f6dc&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=olf&utm_term=081320

    snippet: Surge 2 patients had a significantly lower burden of overall and specific comorbidities such as diabetes, hypertension, and obesity

    A greater proportion of surge 2 patients received remdesivir and enoxaparin. A smaller proportion of surge 2 patients were admitted to the ICU (20.1% vs 38.1%; difference, −18.07%; 95% CI, −21.89% to −14.25%). Length of hospital stay was less (4.8 vs 7.1 days; difference, −2.31 days; 95% CI, −2.78 to −1.84 days). Among dead or discharged patients (n = 2252 [77.5%] overall; n = 774 in surge 1 and n = 1478 in surge 2), surge 2 in-hospital mortality was significantly lower compared with that for surge 1 (5.1% vs 12.1%; difference, −7.07%; 95% CI, −9.63% to −4.51%).

    Reports like this contribute to the overall picture, but it isn’t clear that there is any generalizable information.

  83. Part of what slays me about the convos here at Climate Etc., is that there have been countless times that I’ve seen valiant calls for “engineering quality” analysis and performance testing, and there have been countless times that I’ve seen the argument made that the private sector could never get away with the incompetence of the government sector because the private sector has “skin in the game,” and yet.

    I have yet to see any of the “denizens” even remotely willing to hold this administration even remotely accountable for what seem to me to be obvious failures at multiple levels of leadership and performance with respect to responding to the pandemic

    Instead, we get the weakest of arguments – for example, talking about how Trump was accused of xenophobia for the “China travel ban” and flat out ignoring the insufficiency and poorly executed nature of the “ban.” Whether he was improperly accused of xenophobia is a *political* issue – and has nothing to do whatsoever about the “engineering quality” aspect of the “ban.”

    Or talking about how many tests have been done in this country while ignoring the relatively poor performance in testing per capita – we’re still only 19th in the world despite our enormous resources and the relatively greater need that we have based on per capita infections and relatedly, per capita illnesses and hospitalizations, and per capita deaths.

    Or saying nothing in response to the nonsensical argument that we have more cases because we’ve done more tests.

    Or saying nothing about the lies about testing capacity, or the failures to live up to the promises about testing capacity.

    Or saying nothing about the claims of saving “millions of lives” (I think the claim is now up to 5 million lives saved) – even as my much beloved denizens argue that actually more lives will be lost than if we had just followed the “national leadership” of Sweden’s national leaders.

    What is it that keeps these advocates for “engineering quality” evaluation from applying such a standard to their preferred politicians? What is it that keeps the from considering whether their preferred politicians act like all politicians, and pander for votes and shirk responsibility and just make bad (if understandable) decisions?

    It’s really quite remarkable. I happen to think that a cult mentality may, indeed, be a big part of the explanation. Of course, a cult mentality isn’t unique to the denizens or Trump toadies. It’s an offshoot of plain tribalism and identity-defensive and identity-aggressive cognition, which in turn is just an offshoot of plain ol’ motivated reasoning. And we’re all affected by the biasing influence. But I really do think that there’s something here about the cult of personality that is in play. My guess is that if another Republican “leader” failed in the same ways that Trump has failed, the “denizen” types would be less sycophantic. I think that this whole fealty to Trump think is a somewhat unique phenomenon – and my guess is that it has to do with the “white grievance” aspect because Trump is particularly good at mongering lib-hatred in ways that other politicians can’t quite match.

    • Classic –

      Just saw another example of the same kind of argument.

      Just heard that Pence say that “We’ve already created more jobs in the past three years than Obama and Biden created in their 8 years in office.”

      He could be writing comments at Climate Etc.

    • Joshua: I have yet to see any of the “denizens” even remotely willing to hold this administration even remotely accountable for what seem to me to be obvious failures at multiple levels of leadership and performance with respect to responding to the pandemic

      Remotely, eh? In January he was lied to by CPP and WHO, given what turned out to be over-optimistic advice by Dr Fauci, impeached on bogus charges by Democrats in the House, grossly insulted by Dem leadership over his excellent State of the Union Address — and then undermined by the poor performance of nominally expert professionals in FDA and CDC held over from previous administrations.

      So, itemize your charges and give the evidence. Meanwhile, nothing he did was as bad as an order by Gov Cuomo and a recommendation by Mayor de Blasio. Don’t write as though Trump was uniquely awful in making this situation as bad as it is.

      One aspect of his “leadership”, somewhat ambivalently received depending on party affiliation, has been his relentless drumbeat in favor of getting Americans back to work. Govs Newsom and Whitmer would gladly have sacrificed their remaining auto factories along with their “nonessential” fitness centers and hair salons. But we are not really a country in which everyone does what a national leader announces he wants: right now NEA and AFT have resisted going back to work in some places unless “demands” irrelevant to their jobs are met. When people have been sampled to be tested for SARS CoV-19, at least half skip their appointments.

    • Joshua: my guess is that it has to do with the “white grievance” aspect because Trump is particularly good at mongering lib-hatred in ways that other politicians can’t quite match.

      My guess is that you do not like assembling large amounts of diverse, sometimes discordant, information into a complete picture.

  84. oops. “past three months…” Not years.

    Classic.

  85. There was worry for a time that going to hospital for “routine” care might increase the spread of SARS CoV-2; here is the first study I have seen relevant to that question:
    https://jamanetwork.com/journals/jama/fullarticle/2769678?guestAccessKey=1e919b24-646f-4d4d-a870-fad3d0bbd212&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=olf&utm_term=081420

    Here, COVID-19 rate was unrelated to number of pre-term hospital visits.

  86. Nic, and all commenters,

    I still do not understand what is meant by Nic’s HIT computation on COVID 19, as it appears that the main protection for each individual and the entire population comes from prior corona infections, not from exposition to COVID 19.
    See recent studies published in Singapore and Stockholm.
    I am convinced all these HIT computations are correct And elegant mathematically, but a serious input is missing in the model
    Daniel

    • Stephen Anthony

      Well I think Nic’s, Gomes’s et al models are even more elegant, so there you go. I’m sure Nic will correct me if I err, so here goes, Yes it could be that prior exposure to Covid-19 variants has reduced the HIT for Covid 19. However there is a good alternative explanation, that people are varied and vary very much in their gregariousness, tactileness, number of contacts etc. Let’s use the example of train ticket collector/checker, meets 100s of people every day, he/she is likely to be one of the first to be infected because of the number of people they meet at close quarters. They in turn are likely to become super-spreaders (because of the number of people they meet) for the few days they are infectious (if they’re symptomatic). If they are asymptomatic then it’s for more than a few days until they become noninfectious. So we get very high Ro to start with. As the disease progresses the highly networked people recover or die and become uninfectious. So Ro is reducing as time goes on and the number of highly networked people reduces, and the uninfected that are left are the more resilient (for whatever reason, could just be that they are alone).

      • Well thanks, but this does not explain what Nic’ computations compute, and how these computations take into account immunity from prior Coronas.
        As a matter of fact, if you consider that 5-10% of population « met » the COVID-19 virus and 25-40% have prior immunity, the question of HIT is potentially a different equation from the one « solved » by Nic.
        Also I would mention recent studies in Spain and Italy (50 000 each) demonstrating that people who remained Teleworking at home have same rate of infection than those having kept working outside home – so people with much more social interaction do not seem more infected than those staying home.
        An other source of doubt is what we see in Europe for the time, I e some form of apparent increase of Covid cases maybe due to the combination of I) huge testing capability now in place and operating, II) contact tracking framework now in place, and iii) young people having many close « social » interactions ; hence a significant % increase of Identified cases (including fake ones due to dead virus triggering the tests ?) without any increase of hospitalized cases, not to mention ICU cases. All in all, it would mean that HIT is still not achieved. Which is hardly surprising where lockdown took place and people were terrorized by State and MSM quasi-propaganda
        Daniel

      • Stephen Anthony

        Daniel.
        Re “, but this does not explain what Nic’ computations compute, and how these computations take into account immunity from prior Coronas.”

        You would need to look at Nic Lewis’s program for the mode detailsl. I presume that the model output shows reduced HIT as Nick has stated. If there was already immunity from previous exposure to coronaviruses (as I understand Suneptra Gupta from Oxford believes) then this could be incorporated into the model. As I understand it, this means even less people would be need to be infected, since the start of the pandemic to achieve HIT.

      • Daniel –

        > As a matter of fact, if you consider that 5-10% of population « met » the COVID-19 virus and 25-40% have prior immunity,

        I think the evidence shows that not to be a belief supported from what is known thus far – not the least because “immunity” as acquired from exposure to other coronaviruses may help reduce the severity of someone’s reaction once infected (entirely a theoretical conjecture at this point), my understanding is that there is no evidence thus far, and apparently it is quite unlikely, that it would limit let alone eliminate susceptibility to infection.

      • Stephen –

        > Yes it could be that prior exposure to Covid-19 variants has reduced the HIT for Covid 19.

        You might benefit from reading this as well:

        https://twitter.com/profshanecrotty/status/1293344524731691008?s=20

    • Daniel –

      > I still do not understand what is meant by Nic’s HIT computation on COVID 19, as it appears that the main protection for each individual and the entire population comes from prior corona infections,

      I suggest that you read this:

      https://twitter.com/profshanecrotty/status/1293344524731691008

  87. Researcher on the Nature T cell “immunity” study takes the time to correct some widespread misconceptions.

    tl;dr – the message of T-cell immunity to *infection* (lowering the HIT) should be the re-visited by those who are promoting it.

    https://twitter.com/profshanecrotty/status/1293344524731691008?s=20

  88. So Tegnel thinks that reading and chinstrap teaching are crucial. Funny – ’cause I thought I’d seen people who think Sweden’s policies are the way to go say that trading and contact tracing aren’t important.

    I guess my memory mixture be going on me.

    https://www.thelocal.se/20200810/testing-and-tracing-crucial-to-next-phase-of-swedens-coronavirus-outbreak-tegnell

  89. Lol! “Reading and chinstrap teaching” = testing and contact tracing.

    Hilarious.

    • “mixture be” = must be.

      • > in that the test result becomes negative much sooner after a person ceases being infectious than is the case with a (super-sensitive) RT-PCR test.

        It makes sense at so many levels (stimulus not needed, economic costs not incurred, etc.) but that is certainly one – in that it means that there won’t be a bunch of people who aren’t actually infectious self-quaranteening – as we apparently have now.

    • Steven Mosher

      Looking at actual data on peoples behavior

      https://youtu.be/Ew2MEF4XX8w?t=2347

      • Thanks for the link. I keep forgetting to follow that series regularly.

      • It’s insane that this isn’t happening:

        –snip–
        A Harvard epidemiologist and expert in disease testing is calling for a shift in strategy toward a cheap, daily, do-it-yourself test that he says can be as effective as a vaccine at interrupting coronavirus transmission — and is currently the only viable option for a quick return to an approximation of normal life.
        –snip–

        Even openers should be all over this. It obviously would facilitate normalizing the economy. It’s exactly the kind of behavior change that would compliment even a “herd immunity” approach. Even though it would require funding it could be cost-effective in the long run by reducing the need for stimulus.

        What could explain why people aren’t all over this? Are there any other than insanity?

        https://news.harvard.edu/gazette/story/2020/08/cheap-daily-covid-tests-could-be-akin-to-vaccine/

      • Steven Mosher

        Joshua it is INSANITY.
        it so frustrating. For example Korea has one of the rapid tests but they dont use it. They still insist on PCR.

        I believe that Boston schools may be moving to this cheaper testing.
        in the USA PCR testing is virtually meaningless from a clinical standpoint

      • So here’s the question: is it possible that profit motive – via the channel where companies with a vested interest in the PCR tests – will block widespread use of a saliva test for cheap, frequent testing with quick results that can be used on a broad scale for testing asymptomatic people and pool testing?

        I’m cynical, but I like to hope that won’t happen. It’s just so totally insane to not be moving into this policy. Let Trump make it happen and take credit. I don’t care. If it doesn’t happen I don’t know what else could explain it other than vested interest in other forms of testing. Even old-school big kahuna, muckity muck public health officials who are stuck in an individual care model rather than a public health model have to see the basic logic in play here. It’s just not that complicated. It doesn’t even require a sophisticated approach to risk analysis.

        https://twitter.com/ASlavitt/status/1294654256763609090?s=20

      • Here a long Q&A between Medcram’s Kyle Allred and Dr. Micheal Mina about US hurdles between quick (15 min), daily, cheap ($1, machine less) at home tests and reality. Hint – FDA mostly.

      • Antonyms –

        Thx.

      • I am in agreement with both Steven Mosher and Joshua on this one. The video interview makes a strong case for widespread use of fast, cheap testing for COVID-19 in place of RT-PCR testing. The lower sensitivity of the faster test seems actually to be a significant advantage, in that the test result becomes negative much sooner after a person ceases being infectious than is the case with a (super-sensitive) RT-PCR test.

        But I very much doubt if profit motive is the problem here – certainly not in the UK and probably in many other countries with state-run public health systems. Conservatism, caution, lack of full understanding of the problem, and simple ignorance of the options available, among public health officials and the scientists advising them and government ministers seems to me to be a far more likely explanation.

      • Nic –

        The video put up by Antonym lays out in good detail the reasons why this hasn’t happened yet and the profit motive, while indirectly relevant, is not really explanatory.

      • At first I thought “Oh great, a top headline at CNN. Some sanity?

        Then I realized that what Mina says applies here. One strip forward, two steps back. This appears to be a test that requires lab testing and is still too expensive. Great that it takes only 3-hours to process. So it seems like a very good diagnostic test. It fits will into an individual treatment model.

        What it doesn’t do is fit with a public health model that focuses on reducing transmission. What it doesn’t do is create a paradigm for allowing the economy to open broadly, with less risk and uncertainty than a vaccine.

        https://www.cnn.com/2020/08/16/health/us-coronavirus-sunday/index.html

    • Steven –

      https://www.cnn.com/world/live-news/coronavirus-pandemic-08-15-20-intl/index.html

      FDA approves emergency use of rapid tests

  90. Just because someone isn’t afraid of Covid doesn’t mean he or she doesn’t believe in it. He or she understand the risk but doesn’t prioritize fear over life. – Source unknown, likely a Trump Cultist.
    You bring us fear. Go away.

    • Ragnaar: “Just because someone isn’t afraid of” driving 100 mph “doesn’t mean he or she doesn’t believe it” is risky. “He or she understand the risk but doesn’t prioritize fear over life”. Nevertheless, we don’t let that person endanger others by driving 100 mph on public roads.

      Now, let’s substitute replace fear of “COVID” and “driving 100 mph” with: dumping raw sewage, processing food under unsanitary condition, driving a car without a catalytic converter, and a hundred other regulations made for public health and safety.

      The problem with COVID is that it poses its biggest dangers to those who are older (though many survivors are likely to suffer serious long-term effects from a virus that infects heart and other organs beside the lungs). We tried banning alcohol in this country, but decided that we had to live with its high costs: 88,000 deaths/year (10,000 driving), 25% of people bing drank (5 drinks in 2 h) last month, 6% bing drink regularly (alcoholics), and $0.25T in cost. Clearly it is too bad Prohibition was a failure and prohibition of marijuana is ending. However, people can choose whether to take drugs. No one, especially the most vulnerable, can avoid the risks associated with the current COVID pandemic. Despite everything we have learned and massive precautions, nearly half of those recently dying in Florida were living in nursing homes or assisted care. If you think reckless behavior is justified because one personally has little to fear from COVID (or from driving after excessive drinking or driving 100 mph, etc.), you are simply ignoring the real-world consequences of your actions.

      It should be clear by now, that suppressing this pandemic in the US this spring – as most of Europe and many Asian countries have – would have put us in a far better place to re-open our businesses and schools. The difference between suppressing a pandemic and leaving it uncontrolled is SO SMALL: If one person on the average infected 0.8 other people rather than 1.0, the pandemic in the US would be essentially over. We wouldn’t be passing another multi-trillion dollar bill to deal with the consequences of our failure.

      Respectfully, Frank

      • Frank –

        There is another important aspect closely related to the one you discuss. We know that the virus impacts different communities differentially. This when someone says “I know the risk and it is a risk I am willing to take” they srently only taking it upon themselves to in part decide what risks older people will be expose tiz they are also deciding that they effectively don’t care about exposing other communities to a higher level of risk.

        I’m top of that, since we know that those communities where the risk is higher are also many of the same communities where there is a higher concentration of essential workers, while mostly I would think not intentionally, the people deciding to take on more risk are often also relying on other communities where the risks are higher to mitigate their own risk. People can say “I know” THE” risk and I am willing to take ON “THE” risk without realizing that their risk would be higher excepting that other people will be put at higher risk in order to keep their own risk as low as it is.

        The parallel might be the person who drives at 100 miles per hour and says “I know the risk and I am willing to take on the risk.” and disregards the exta risk to highway workers who are out there repairing the roads that enable that risk-taker the ability to mitigate his own risk when driving on roads that don’t have huge potholes.

      • I’m wondering which countries in Europe successfully supressed the epidemic. It looks to me that with the exception of Germany, most of the big countries had about the same fatality rate per million as Sweden. There are now second waves in some countries. In the US, California has perhaps the strongest “suppression” effort. Yet cases and deaths are climbing.

        “Suppression” has a mixed track record. We failed with AIDS even though simple behavior changes would have totally stopped it since it was very difficult to transmit. People are not compliant canines who follow the directives of an elite or a government. Compliance is always a problem with any organized attempt to prevent harm. Even industrial safety compliance is not perfect. We have had trouble controling may communicable diseases because its hard to get people to comply with public health advice. Just look at the obesity epidemic. That’s perhaps a bigger public health issue that covid19. And there are very effective methods to stamp out obesity that involve behavior changes.

        I don’t know where this attitude comes from that any measures no matter how harsh that can save lives are justified. We could save 45,000 lives a year if we reduced the speed limit to 10MPH. Many cardiovascular disease deaths are preventable too if people would improve their overall health using easy steps.

      • dpy

        I have my own take on Europe, California, first, second, and third wave. I elaborated in separate post.

        The advantage of the strong measures at the first outbreak is that they can bring infection rates down and provide time. Time to understand what the virus is about, time to find good treatments, time to maybe develop a vaccine, time to find what preventive measures will work best. Comparison to speed limits and such is apples and oranges. The risks of the virus initially were unknown. Risks of driving a car are well-known.

        How many people died in Sweden who might not have died if they had been treated with drugs that we now know do work? How many people in Florida and Texas are now living because they are being treated with drugs that work?

      • In this case it’s clear fear is prioritized over life. Lives of children are being stolen by keeping them from learning. There’s all the economic fall out. The lockdown did contribute to the rioting and businesses which were life works, were destroyed. Lost tax revenues will be repaid not by the rich but by the working class. Urban cities are reeling because of the lockdowns. It’s all driven by fear. It was a bleep show. 90% of politicians should be ashamed of themselves as they bowed to fear. Our nation will not live on its knees. But we see that our politicians will. We will come in at 350,000 deaths. One in a thousand. Life happens. People die. Accept it. There is no fairy that’s going to save them. Certainly our politicians aren’t going to save us. Politicians can rearrange bleep. They mostly just destroy value.

      • Ragnar –

        You seem to forget that Trump saved 5 million lives!

      • 5 millions lives. When you bring in quality of lives, he probably did. Having a job does that. And having a job flows through to one’s children’s future. Deaths from the virus is at the wrong resolution. You know that. It’s the virus deaths Olympics. It hasn’t impacted me. I just watch a bunch of fools run around pretending to save people. Same damn thing they’ve always done. We all die. Nancy Pelosi saving me? No thanks. I’m good.

      • Ragnaar –

        > When you bring in quality of lives, he probably did.

        Lol. The cult endures!

        Of course, Trump’s claim is to have saved 5 million lives from his “decisive action” to battle the pandemic. But never mind. Being in a cult means you never have to acknowledge something like that. It’s so convenient!

        > politicians should be ashamed of themselves as they bowed to fear.

        You’re so macho. I’m so impressed.

      • James, Your rhetorical questions are unanswerable. How many lives could be saved if we could get people to get to a normal weight and exercise properly? Perhaps 500,000 per year.

        The speed limit issue is completely analogous because we knew early on the characteristics of this disease. Ioannidis did his Diamond Princess analysis in early March. Oxford University had a good IFR estimate in mid March. We knew even earlier that this disease had a very skewed age susceptibility profile.

        We also had historical experience and knew that in virtually all epidemics, the IFR estimates decline over time, sometimes dramatically.

        I just think there is a line of thinking about this that is childish. 2.85 million people die in the US every year. Every death is a tragedy, but rational policy hopes to allocate resources to do the most to improve human well being. Lockdowns had caused massive collatoral damage that is affecting the poor most strongly. Upper income people have prospered during the epidemic. The poor have suffered massive unemployment and a decline in the educational progress of their kids. The rich’s children have actually progressed better than usual probably their parents can hire tutors. The cost will be immense, including in lives lost to despair, delayed medical treatments, and loss of income.

      • This has been a massive failure by the Trump administration by much of your logic. I’m assuming based on your arguments the shutdown of travel and the initial lockdowns were all a huge mistake by the administration. Why shut down travel with China or Europe? Obviously childish thinking. Think of the collateral damage on the airline and tourism business.

        Proof is that it didn’t work anyway and we are worst in the world with the virus.

        Good thing they got all that corrected now. Still the economy is in the tank. Wonder why?

        Oh, wait. We still do have travel shutdown. Why? Just because we can’t travel to any other country doesn’t mean we should stop people from coming here. Of course, just the right sort of people. Russians, rich Arabs, anybody with a lot of money.

        Texas, Florida – red states, virtually no lockddowns – in the tank. Wonder why?

        Sweden’s economy dropped 8% from April to June. We should be more like Sweden, I guess, or maybe even more Swedish than the Swedes, who shutdown their secondary schools and have crowd limits in bars. Just without the taxes and the socialism stuff.

        We made a big mistake letting old people take the ICUs from the young people. Should have been an executive order about that to reserve the ICUs for only the right kind of people (you know what I mean).

        What’s the big deal? Everybody dies. It’s a known risk of living. Very well understood.

        It’ll vanish by April… going, going, going gone. Not quite

        Testing – anybody can get a test. Getting a timely result another matter.

        Take some detergent – good. Take some HCQ (but make sure it’s with zinc) – good. Masks – bad. Big indoor rallies (but just the right kind of rallies) – good.

      • J:

        In the virus deaths Olympics, when you save an 85 year old from dying from the virus, how many deaths have your prevented? 1/20 deaths. I know you’re smart. Quality of lives.

        When you take away a ½ year of schooling from an 8 year old, how many quality of life years have you lost? I’d say 3 years. I made that up, but you get the point. There’s all the spin offs too. Like the impact on that child’s parents. Their productivity.

        Trump isn’t afraid to say, open the schools. The Republicans are afraid to say it. And the Democrats want to walk over children get Trump out. Child sacrifice? What the hell. We are talking about Trump. Child sacrifice. That’s a cult.

        I want to throw Grandma onto a snow bank. Others want to throw children under a bus. You had a good run Grandma.

      • James Cross:

        You’re playing the virus deaths Olympics. Here’s a medal for South Korea. And one for China. I am playing the quality of life Olympics.

        The argument is not that Trump was right. He’s trolling you same as always. It’s that you don’t see what’s important. And one is not right because they are on the opposite side of a question from Trump. Trump made people in favor of war by being against it. This is no different.

      • Ragnaar –

        I’m truly impressed with how tough and macho and courageous you are. No wonder you’re so enthralled with Trump. He’s a big tough guy as well. He says “strong” and “tough” a lot and that proves it. I’m sure he only makes sure that everyone who comes within 100 fee rod him gets tested because his advisors aren’t as tough and brave as he.

        Unfortunately, along with your braveness also comes binary thinking.

        Grandma and little Suzie live together. And some of 25% of Suzie’s teachers are at high risk. The % of staff at her school at elevated risk is even higher. And guess what, they have families who they live with also.

        So this romanticized binary notion of choosing between grandma dying and Suzie going to school is FALSE. It is a false dixhomomy. For every grandma that does, many more grandmas get seriously ill. And middle-aged adults die and many more than that get seriously ill. And for all we know many will have serious ongoing health issues for years or decades. And the communities that are exposed to risk so that you can minimize yours will be disproportionately affected.

        Since you’re such a brave fella, I hope you’re volunteering at some hospital to help treat those infected. Without PPE, of course, because you’re so fearless. And without using PPE, of course, as you wouldn’t want to waste those supplies on someone who so relishes looking at death in the eye and not flinching like those namby pamby libz.

        It surely would be a tragedy for you to waste your guttiness sequestered away in your personal space while others take on risk to supply you services! Maybe Trump will join you?

      • J:

        It’s making the optimal decision. I am saying that guiding that is not a hate of Trump. To say South Korea is better at the virus deaths Olympics is to say, Trump is worse and many of our Governors are worse. But that’s answering the wrong question. None on that has to do with making the optimal decision.

        And opening schools, isn’t really Trump’s decision. He can be blamed which does nothing.

        Back to my original above. Fear. You’re afraid because Trump is an idiot? Chill. Children will not go to school because Trump substantially ruined it and you’re afraid. That’s not making the optimal decision. That’s not living life. That’s cowering.

      • Joe - the non epidemiologist

        Franks’ reply “It should be clear by now, that suppressing this pandemic in the US this spring – as most of Europe and many Asian countries have – would have put us in a far better place to re-open our businesses and schools.”

        Quite the opposite – the countries that had the bad outbreaks this last spring are currently in much better shape to reopen their economies.
        UK,
        Spain
        Sweden
        France
        along with the NE corridor of the US, NY, NJ, CT
        Those countries/areas currently are have very low new cases and even lower deaths.

        Secondly, delays in reopening are retarding the development of the human immune system. The underdevelopment of the human immune system will have vastly more long term negative consequences.

        Third, Your comment about long term / permanent damage based on the medical literature is dubious at this point. Its only been 2-6 months depending on the patient, which is way too early to ascertain whether any damage is permanent. That claim frequently bandied about – is making the dubious assumption that the human body lacks the well known healing powers for virtually all other diseases, but somehow lacks those same healing powers because it is “covid”

      • Frank wrote: “It should be clear by now, that suppressing this pandemic in the US this spring – as most of Europe and many Asian countries have – would have put us in a far better place to re-open our businesses and schools.”

        Joe replied: “Quite the opposite – the countries that had the bad outbreaks this last spring are currently in much better shape to reopen their economies: UK, Spain, Sweden, France, along with the NE corridor of the US, NY, NJ, CT. Those countries/areas currently are have very low new cases and even lower deaths.”

        The question is: Why do the places you cite currently have low rates of new infections today? There are three hypotheses:

        1.) The hard hit locations implemented the most effective public health policies and the scared public is being far more cautious. These factors have resulted in 10-fold and greater reductions in new cases. We know for sure that public health measures and fear in some Asian countries have done a remarkably good job of containing this pandemic without appreciable help from herd immunity. ANY REDUCTION in new cases can be explained by these factors.

        2) There is growing support for the hypothesis that Nic has been presenting: The initial surge in the hard hit locations brought them close to herd immunity. Herd immunity is much lower than expected from R_0 because people vary substantially in their ability to resist infection and in the likelihood they will infect others. The initial surge may have selectively eliminated those most likely to be infected and/or transmit the infection to others.

        3) Both hypotheses are at work. Fear and public health measures are reducing the number of potentially infectious contacts between people AND more people are totally or relatively resistant to acquiring or transmitting the infection. When fear and public health measures end, cases will start growing again, but not as explosively as before.

        Although I try to keep an open-mind, I’m skeptical that hypothesis 2) is playing an important role right now. Why? a) The 1918 Spanish flu came in multiple waves, all but the last halted well short of herd immunity for about six months by fear and public health measures. About 1/3 of the people in the US were recognizably infected with a little less than half needed to reach traditional measures of herd immunity. b) 70% of the infamous Washington choir (about 50 people) were infected in two hours by one super-spreader. It looks like the majority of people can be easily infected. c) More than 40% of an Austrian ski/party town was infected in less than two week. d) More than 80% of the inmates in one prison were infected. e) According to today’s NYT, some neighborhoods in Brooklyn have 80% seropositive people. All of these examples suggest to me that the 20% seropositivity currently observed in Sweden and other hard hit areas is not likely to have been enough to account for the majority of the decline in hard hit areas. IF I’m correct (I skipped over some caveats), then public health measures and fear are the main factors responsible for the fact that those areas that were hit hard in April and now safe enough re-open schools.

        What is absolutely clear from the graphs I posted is that the US lockdown beginning on 3/19 and 3/20 ended a month where cases were doubling every 2.5 days (a 5000-fold increase) and new cases were declining slightly by April 10. Given that those who were infected the day before lockdown needed about a week to come down with symptoms and perhaps another week to get sick enough to get tested, the dramatic change in early April must have been due to lockdowns. And the vast majority of cases occurred after the peak in early April, so approaching herd immunity was could not have been a factor.

        https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-923639

        You are correct that we don’t fully understand what the long term consequences of surviving a severe case of COVID are going to be. However, we do know that ACE2 receptors are found on heart, kidney and other organ cells. We know cells in those organs become infected and our immune system kills those infected cells. The process of cleaning up the dead cells produces inflammation. Atherosclerosis is mediated by inflammation. A German study found that survivors of moderate and severe COVID infections showed on-going high levels of C-reactive protein and other markers of developing cardiovascular disease. Nerve cells can also be infected. There are now hundreds of news stories about the side effects of surviving COVID that persist for months. We don’t know how severe these problems will be for how many for how long, but those who think we should let the pandemic burn out because so few people not nearing the end of life die could turn out to be tragically wrong.

      • Frank –

        A few weeks ago, Nic posted a picture of young people partying n Sweden partying in public, with the implication that they were able to do so because of herd immunity

        –snip–
        Over the weekend, the Wuhan Maya Beach Water Park was filled with partygoers in swimsuits bunched together shoulder to shoulder, waving to the beat of the music while cooling down in hip-high water; others relaxed on inflatable rubber tubes that packed the pool to the brim, with little space to float around.

        https://cdn.cnn.com/cnnnext/dam/assets/200818130318-02-wuhan-water-park-1808-large-169.jpg

        –snip–

        The problem here is that people are making assumptions that either these “explanations” are somehow mutually exclusive or that you can infer from situations where infections have (or haven’t) slowed down, either one or the other explanation suffices.

        While we probably can’t trust the statistics coming out of China, I don’t think it’s plausible to assert that Wuhan reached its current state because of reaching a herd immunity threshold. But I also think it’s unlikely that NYC reached its current state merely because of a high number already infected, or that they did so in some fashion that’s completeky independent of (1) government policy directed at slowing the spread out, (2) behavioral changes for other reasons (i think “fear” is an overly-simplistic description). And further, I dint think it is reasonable to assume that Stockholm or Sweden would continue their current rate of spread of everybody actually went back to “normal” behaviors assuming that they’re protected by having reached herd immunity

        I keep stressing that behavior necessarily affects the trajectory of the number infected, and thus reaching a hit – AND, that he interaction between government policy and behavior is complicated, is influenced by many interaction effects, and involves many mediators and moderators.

      • –snip–
        in Wuhan, life has gradually returned to normal since the metropolis of 11 million people in Hubei province lifted a stringent 76-day lockdown in early April. The city hasn’t reported any new cases since mid-May.
        –snip–

        https://www.cnn.com/2020/08/18/asia/wuhan-water-park-party-intl-hnk/index.html

        There’s a lot of talk here about governments restricting “basic freedoms.” I don’t dismiss the importance of considering that question, but I think that people need to take a nuanced perspective on that issue. It seems that currently, in Wuhan there may be less restriction of SOME basic freedoms, such as the freedom of assembly, than virtually anywhere else on the planet. That came about by a 76 day period of a harsh restriction of “basic freedoms.”. Maybe in the long run, it will turn out that there was less total restriction of the right to assembly in Wuhan than in many other places.

        I’m not advocating for adopting a Chinese style government. But I am advocating that people stop applying simplistic or binary or absolutist reasoning to these matters. There are always trade-offs in real life. There are always unintended consequences to all government policy initiatives and even when a government decides NOT to enact a particular policy.

        We all benefit by taking the time to carefully ask ourselves how our ideological preferences might be influencing how we are collecting and evaluating evidence.

      • A case in point.

        –snip–
        You’ve seen what’s going on in New Zealand?” Trump said of the island nation, which went months without any new covid-19 cases. “Big surge in New Zealand. It’s terrible. We don’t want that.”
        –snip–

        Belongs right up there with “if we didn’t test so much we wouldn’t have many cases” and “anyone who wants a test can get a test.” and “we created more jobs in the past three months than Obama and Biden did in their eight years in office.”

  91. Nic,
    You may find it helpful to examine the data from Geneva. One major advantage is that the data on tests, confirmed infections, hospitalizations and deaths have been consistently recorded with Swiss efficiency. They are also easily accessible.

    Additionally, there was a well managed seroprevalence study carried out using testing from 6th April to 9th May. (https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(20)31304-0/fulltext ). The study concluded that there were 11.6 actual infections for every positive recorded case. This conclusion was based solely on the presence of IgG antibodies, and so probably represents an underestimate of actual infections, but I will use this scaling factor without adjustment in the indicative calculations below.

    The data for the comments below are drawn from here, using the update of 14th August:- https://www.ge.ch/document/covid-19-donnees-completes-debut-pandemie

    During the first wave, with closure of the land borders and a tight lockdown, Geneva became virtually an island city. Under these conditions, Geneva reached its peak in recorded cases on 2nd April with a cumulative case count of 3469 recorded cases, suggesting a true infection count of perhaps 40,240 or a little over 8% of the Geneva population (499,480 people). This gives an indicative estimate of the effective HIT under the prevailing lockdown conditions in Geneva.

    Geneva started to re-open in early May, and by early June was completely re-opened for business – everything from swimming pools to strip clubs, as one reporter put it.

    The last recorded fatality from the first wave was on 10th June. At that time, the cumulative recorded case count had reached 5362, corresponding to a true infection count of perhaps 62,200 or 12.5% of the population, and daily case counts had fallen to less than 2 per day (averaged over a week). The first wave was over.

    During June and July, when the city was fully re-opened, the daily case count increased to just over 43 recorded cases per day over the last week in July, with a single daily high of 61 cases. The authorities took the step of closing nightclubs and introducing rules for wearing masks. Large gatherings of over 1000 people are banned. Otherwise life has continued as normal. The case count averaged over the most recent week available (7th to 13th August) has fallen to 38 per day.

    The cumulative case count as at 13th August stands at 6444 recorded cases, suggesting a true current infection level of perhaps 74750, or 15% of the population. This seems to represent a new HIT for the prevailing voluntary and imposed social conditions, although it is a little early to tell.

    One other thing is of particular note. During the first wave, upto 10th June, the Case Fatality Rate was 5.5% based on recorded cases. Since the end of the first wave (again using as a marker the fatality recorded on 10th June), there have been a total of 1082 recorded cases, but only one single fatality recorded. This is either a different population, a different disease or a massively improved therapeutic treatment which the Swiss are hiding from the rest of the world. I suspect the first.

    • Paul,
      Thanks for that info. I’ve downloaded the cases and deaths data and done an initial analysis. I think there is a simple explanation for the reduction in the Case Fatality Rate. As you suspected, the explanation seems to be that the infected population is different. The average age of new cases has fallen from around 50 up till mid-June to about 35 since late July, as shown in this chart.
      https://curryja.files.wordpress.com/2020/08/geneva_casesdeaths_ages_to15aug20.png

      Since the IFR is very much lower for younger people, it is unsurprising that the ratio of deaths to cases has fallen dramatically.

      The average age of COVID-19 deaths has remained at around 80 (taking the mean age of deaths in 80+ year olds as 85). But while there were 635 cases in 80+ year olds up to 14 May, with 208 resulting deaths (over 70% of the total), for a CFR of 33%, in the last 3 months there have been only 17 such cases and 1 death (a CFR of 6%). Although the sample is small, that suggests there has also been a considerable improvement in treatment of aged patients – unless most of the less healthy 80+ year olds had already been infected earlier on.

      • Joe - the non epidemiologist

        Nic – and any others wishing to comment

        I am seeing frequent reports/studies implying that the infected young and middle aged are getting permanent lung/ heart/ brain damage from covid. Those reports seem dubious (or at least premature) since, A) the are written in a manner to continue to instill fear, and B) being only 2-6 months out depending on the infected patient, it seems way to premature to ascertain if any damage is permanent along with the human bodies well known ability to heal some how is turned off since it is covid.

        thoughts-

    • I could nitpick about some weaknesses with the Geneva study If you look at the only figure, you’ll see that the pandemic was mostly over (about 4300-5000 PCR positives) during even the first round of antibody tests were run. So one might have expected no significant growth in seropositivity over the five period of testing – unless there is a significant delay between having detectable viral RNA and detectable antibodies. Of course there is a delay, but what delay did they use? (See supplemental material.) How does that delay compare with the delay observed when you follow individual patients with time? Using the correct lag is critical to properly aligning growing RNA positivity with growing seropositivity (but the paper didn’t draw any important conclusions that depended on this lag) I could argue that weeks 3-5 of testing (and maybe even weeks 2-5) were just repeat samples of the same population after the bulk of pandemic was brought under control, making mean seropositivity 9.5%. Since the study is continuing, we will see if the low value from week 4 (6.6% seropositive) was an outlier or a reflection of the innate variability inherent in sampling.

      Figure S1 in the Supplementary Material casts some doubt on how representative their sample is of the population as a whole. The population that was tested for antibodies began with a pre-existing representative sample of Geneva’s population. 25% of that sample who could be contacted by email volunteered to participate (7% in key week 5) along with an equal number of volunteers from the same families. How representative is this sample?

      After nitpicking, the obvious conclusion is that I still have trouble accepting that – when I look at data for PCR positives – I’m not seeing something like 90% of the pandemic.

      • Frank,
        You wrote:- “After nitpicking, the obvious conclusion is that I still have trouble accepting that – when I look at data for PCR positives – I’m not seeing something like 90% of the pandemic.”

        Since my first post above on Geneva, the number of daily recorded cases has continued to fall since its late July second peak. There has been one additional death. There are currently no patients in intensive care. HIT has already been passed for Geneva with prevailing social conditions. The city is wide open to community spread and imported infection apart from the late interventions related to closure of nightclubs, mask-wearing and restrictions on congregations above 1000 people. The cumulative number of recorded PCR-positive cases has now reached 6750 – just 1.4% of the Geneva population. You think that 1.4% is a better estimate of HIT than the serological sampling??

  92. dpy6629 and Ragnaar: You and others appear to be living in fantasy worlds. Deal with reality:

    In the US and most of Europe, we were witnessing the number of cases of COVID double every 2.5 days in March. Exponential growth of cases inevitably overwhelms the health care resources available to deal with the problem. The best course of action may or may not have been to let the pandemic burn itself out naturally, but that is irrelevant. We don’t live in a world where our leaders will bravely stand by and watch their citizens dying unnecessarily because hospitals have been overwhelmed with patients. Everything else is irrelevant: How many lives were saved, the age of those saved, the number who die of seasonal influenza, the number who could be saved by defeating obesity, heart disease, smoking, illegal drugs, lower speed limits, etc. Drastic action was inevitable in the REAL world.

    We also don’t live in a world where the vulnerable can be protected from the pandemic. Despite cruel experience, nursing homes and assisted care facilities account for nearly 50% of recent cases in Florida, the state that should be best prepared to protect the elderly. The asymptomatic caregiver problem can be beaten only with daily testing.

    At the time when Trump declared a national emergency and governors began locking down the economy, the US was only 32 days away from 100 million cases – if doubling continued every 2.5 days. Deaths were running above 5% of cases. (100 million cases is about what one would expect based on the Spanish influenza. COVID is more easily transmitted and was more deadly based on confirmed cases. The number of cases not being detected by testing was unknown at the time, but not critical given a problem that was doubling every 2.5 days.)

    20 days after lockdown orders began to be issued, new cases of COVID had begun to fall slightly. Lockdowns succeeded in halting exponential doubling.

    What about Sweden? Cases were doubling every 5 days in Sweden in March. You can speculate about why Sweden was different, but it was different. They had time other countries did not. If cases had been doubling every 2.5 days there, they would have locked down too. (You are too smart to believe the Swedish Prime Minister would be the only leader in Europe willing to watch his hospitals being overwhelmed!)

    Of course, exponential doubling of cases every 2.5 days can’t go on forever. As fear grew, people’s behavior changed. It was already changing modestly before US lockdowns were announced. My son was told to work from home on 3/11. The NCAA cancelled March Madness on 3/12. (The first US states shut business on 3/19 and 3/20.) In Sweden, such voluntary accommodations gradually slowed the growth of their pandemic throughout April and they never had to mandate closing businesses. (However, that didn’t protect Sweden’s economy from severe economic damage. Economic damage is inevitable during a pandemic because customers stay home.) For the rest of the US and Europe, the March surge clearly threatened to overwhelm hospitals, and did so in NYC and Northern Italy. It did so earlier in Wuhan and a month ago in some hard-hit states in the southern US.

    Given that our leaders were destined to lock down our economies at a cost of trillions of dollars and massive disruption, the only sensible strategy was to stamp out the pandemic indefinitely, not simply “flatten the peak”. Flattening the peak simply allows the pandemic to indefinitely disrupt the economy, keep high schools and colleges closed (and possibly lower schools), continue killing the vulnerable, and probably create long-term health problems for a significant number of survivors. If you go to war, the objective usually should be to win as quickly as possible, not simply prevent defeat. The difference between losing (an indefinite pandemic) and winning is ridiculously small: reducing transmission from one infected person transmitting to an average of 1.0 new people to 0.8 of new people. That is all it takes: a 20% further reduction in transmission.

    The US’s failure to win the war against COVID isn’t proof that war couldn’t be won with sensible policy the public would tolerate. The battle against COVID starts with testing, and the backlog in many states today means results are taking a week to come back – just when we need greatly expanded testing to open schools and colleges. That is just one of many absurdities in our response. Don’t tell me the war against COVID couldn’t be won when much of the developed world is (currently) winning it.

    • Franktoo, Your comment is a lot of verbiage that lacks substantiation. Lockdowns were not inevitable unless you believe all politicians are incompetent. In intersectionality land (the land of insane ideology) perhaps some like DeBlasio would have locked down regardless of any science. More sane governors wanted to adopt more sane policies.

      It is simply untrue that in March we were ignorant of the basic facts about covid19. Ioannidis did his Diamond Princess analysis in early March and by mid March Oxford had estimated an IFR around 0.2%. Other less good scientists were more alarmist, especially Imperial College. Even Imperial had the strong age dependency of susceptibility right. Everyone knew this.

      This is a classic case of mass panic which always results in irrational behavior. Unlike the financial panics of the Gilded Age which ended as quickly as they began, this one will have long lasting effects and the harm will play out over years.

      • dpy6629 wrote: “Your comment is a lot of verbiage that lacks substantiation.”

        My comment may look like a bunch of verbiage to someone who doesn’t know the facts. (Based on other conversations, I expected more of you, so I didn’t bother to post and link my analysis) The evidence that lockdowns halted the doubling of cases every 2.5 days is overwhelming. Below are two figures I prepared in mid-May, when talk of re-opening our economy began and I was arguing that we hadn’t done enough to suppress the pandemic (which would last another half year at the then-current rate of decline) and would undoubtably start growing as we re-opened out economy.)

        https://imgur.com/a/6yZfNwo
        https://imgur.com/gallery/eTxYbiM

        My comments about the situation that faced policymakers in late March were based on these graphs. As feared, pandemic has surged in the US, but not in the same states that were hit hard in April. The fraction of infections not detected by PCR tests is better understood, so the maximum number of cases before herd immunity is lower than I realized back then. And I didn’t realize that there would be an unavoidable lag before cases could start doubling every five days following a doubling of transmission.

        You should know from the same information from this widely publicized FT Figure. It shows that many countries faced initial pandemics doubling every 2-3 days. (The rate of increase in new cases and the rate of increase in cumulative cases is the same when doubling time can be treated as a constant.)

        https://www.ft.com/__origami/service/image/v2/images/raw/http%3A%2F%2Fcom.ft.imagepublish.upp-prod-us.s3.amazonaws.com%2F0d6318d6-71fc-11ea-95fe-fcd274e920ca?fit=scale-down&quality=highest&source=next&width=900

        And you can clearly see that the pandemic in Sweden didn’t grow at the same rate as in most similar countries. With all the emphasis on Sweden, I don’t know why no one seems to realize that Swedish policymakers were facing a much tamer pandemic than most developed countries when they took the unusual course of not locking down their economy. (South Korea never lockdown either or closed their borders; they won simply with effective public health measures.) Here is my analysis of Sweden. The US experienced 12 doublings in March; the Swedes only 7 doublings (including outliers early in the month). They didn’t need to lockdown when we did (though I could agree many US states could have started with less repressive measures.)

        https://imgur.com/a/ftpY9fo

        dpy6629 wrote: “Lockdowns were not inevitable unless you believe all politicians are incompetent.”

        I’m very sympathetic to the argument that the best course from a cost benefit point of view may have been to let the pandemic burn out. Locking down was a HUGE GAMBLE that is costing trillions. But I STOPPED worrying about that gamble and started worrying about winning the gamble, when I realized that no leader was going to let his citizens die unnecessary due to lack of access to modern health care. Even Xi Jinping worries that the “mandate of heaven” will be removed from the Communist Party. Can you name one leader of who didn’t intervene when hospitals approached capacity? (Bolsonaro might have been the one, but the leaders of major cities circumvented him.) Preventing unnecessary deaths is what distinguishes first-world countries from third-world countries – which Trump infamously called shxxxxle countries. Even the governor of Texas isn’t going to stand by and do nothing when one hospital in his state admitted they were triaging sick patients and other hospitals were threatened. IIRC, so far, he has only closed bars and committed sacrilege by recommending masks. That may be enough given voluntary adaptation. None of the current surges involved a doubling of cases every 2.5 days. Desperate measures were not required. However, the higher case loads we are now experiencing are making it impossible to open schools and some businesses. Today, UNC Chapel Hill shut down after starting classes a little more than one week ago. None of the 136 students infected in the first week are likely to die, but their infections on a college campus will likely to continue to grow exponentially, and will inevitably be transmitted to the vulnerable in the city of Chapel Hill by university employees. Transmission among upper school students is as big a problem as among college students. Maybe lower schools can stay open with smaller class sizes.

        Of course all politicians are incompetent at cost benefit analysis! They aren’t spending their own money, they don’t need to raise taxes to pay for spending, and they need to get re-elected. Trump was running a $1T deficit with 3.5% unemployment before coronavirus hit. Especially today, the only thing that matters is what is good for my party and major donors; not what is good for the country. Some do wish things were different, but many of those are afraid or being purged. This is what happens when you believe and tell voters that our country’s biggest enemy is the other party, not the pressing issues you were elected to solve.

      • Frank –

        > I don’t know why no one seems to realize that Swedish policymakers were facing a much tamer pandemic than most developed countries when they took the unusual course of not locking down their economy.

        I don’t know why you think that no one realizes that. It’s obvious that one factor in determining which countries enacted which policies were the conditions they faced – just as it is true with different states. The people who ignore that obvious consideration are those for whom confirming a bias is what drives their analysis.

      • “Preventing unnecessary deaths is what distinguishes first-world countries from third-world countries – which Trump infamously called shxxxxle countries.”

        And our unnecessary deaths are all the add on deaths as a result of the Governors policies. So they traded virus deaths for other deaths. And they traded virus deaths for diminishment of future lives like those of school children.

        It’s like borrowing trillions of dollars. The future will have to pay that back. So the first world countries have no vision. So I assume bleephole countries do have vision.

        The government can save specific lives at the cost of other lives. There is no perpetual motion, no magic is allowed, the books balance. Everything imposed has a cost.

        Winning the gamble is best GDP relative to the prior GDP. What’s we’ve seen is policies subtracting from our GDP.

        We’ve had 50 years to save people. And we suck at it. This is a morass, and we’re making it worse.

        The good news is the S & P 500 is telling us, we’ll be Okay. We need to stop seeing ghosts and get back to work.

      • > And our unnecessary deaths are all the add on deaths as a result of the Governors policies.

        What an absurdist, evidence free, argument by assertion.

        Compare Sweden to Denmark or Norway (or even the US). And at least try to factor out the structural advantages in Sweden.

        https://www.economist.com/graphic-detail/2020/07/15/tracking-covid-19-excess-deaths-across-countries

      • “It’s like borrowing trillions of dollars. The future will have to pay that back.”

        The future pays it back from the saving assets the borrowing represents – when the future decides to spend those savings.

        Always remember for every debt there is an asset.

      • joe - the non economist

        It’s like borrowing trillions of dollars. The future will have to pay that back.”

        The future pays it back from the saving assets the borrowing represents – when the future decides to spend those savings.

        Always remember for every debt there is an asset.”

        NOT – There is not asset created when the money is spent on consumption.

      • “Always remember for every debt there is an asset.”

        Okay. Beside stocks, I own government bonds. Those bonds are an asset to me. Let’s say the quote is absolutely true. Is it possible to borrow from the future or steal from the future? It’s possible to save for the future. I can lend you money and my future includes more money and yours includes less.

        I can can vegetables or eat them now. If I eat some of them now, that does have a future benefit. Starving will make me want to do crazy things.

        We among other things are trying to preserve old people which are assets. And we are trying to preserve the old climate. At what costs and to whom? You can’t save the climate without stealing from some place else. But if magic is allowed, we can.

        Magic is capitalism. But capitalism is systematic racism. And we have to end that above all else. Because these cities run by Democrats keep killing the people they are saving.

        But to make an omelet you have to break some eggs, and burn Lake Street in Minneapolis.

    • Also Frank, Your idea of “winning” the war is based on an ideal world where everyone complies with health directives. In the West at least, that will never happen. AIDS for example involved mass noncompliance with very simple behavior changes that could have really “stamped out” the virus. We can’t even stop the obesity epidemic (which has huge costs in mortality and morbidity) when simple behavior changes would suffice. If your ideal world existed, we would have wiped out most communicable diseases long ago.

      • dpy6629 wrote: “Your idea of “winning” the war is based on an ideal world where everyone complies with health directives.”

        Nonsense. You haven’t been listening. The difference between a stable pandemic and winning is only a 20% reduction in transmission from an average of 1.0 new infections per current infection to 0.8. You are ignoring what is happening in the rest of the world and could have happened here.

        Even a notoriously incompetent country like Italy (governed by an unstable coalition between the left and the populist right-wing Five Star movement) has reduced its new case load by a factor of 10 and has about 10 new cases per million while the US has 200 per million. The backlog in our testing system is around 1 week, making the information worthless for contact tracing which never was staffed up. Trump is encouraging his supporters to go out in the streets to protest restrictions in Democrat controlled states and has made wearing mask a political issue. I could go on but won’t.

        AIDS and obesity have nothing to do with the fact that even a modestly more effective effort against COVID could allow us to return to work and school – like most of the rest of the developed world – instead of continuing to struggle.

      • Well Frank, Lets agree to disagree. I don’t know whether this difference is due to German cultural ideas of efficiency or compliance or what, but we are not going to agree on this issue.

      • dpy6629: What are you proposing that we agree to disagree about? Certainly there should be no disagreement over the facts about what happened.

        The lockdowns in the US came barely in time to prevent NYC hospitals from being overwhelmed with patients, and ended a month-long period when cases doubled every 2.5 days. Hospitals in Wuhan and Northern Italy were overwhelmed by a similar problem. The renewed surge in the southern US is threatening to overwhelm some hospitals there. These are facts, right?

        I expressed my OPINION that no leader of a first-world nation would do nothing to stop their hospitals from being overwhelmed by an exponentially growing pandemic. Do you disagree? If so, name one leader who chose not to act when their hospitals were about to be overrun. (The facts show Sweden’s hospitals were not about to be overrun, so they don’t count.)

        If we are not going to let the pandemic burn out, then we have two choices: 1) Dramatically reduce the number of cases to a level where schools and the economy can return to near normal.
        2) Suppress the pandemic just enough to protect hospitals and allow the pandemic to continue indefinitely – interfering with schools and business.
        Which path would you take?

        Please note that I didn’t include the larger number of people who will die as a consideration against path 2. I don’t have the wisdom to be able to balance lives against the cost to everyone else. So I’m asking you to decide between path 1 and path 2 without worrying about deaths.

      • Frank:

        You don’t know that doing X would have caused Y. Each nation and each state is different. There is no control variable. There are many of them. But the answer is the same. We all end up in the same place. The war against the flu is as winnable as this one. Only we don’t want to win that and I don’t think we can. We have too many other wars to fight. That we could have done better in the virus death Olympics doesn’t capture the whole picture. We have sacrificed wealth and well being.

        No, you don’t know how to run the economy. And don’t point to Western Europe about how to run an economy. They are failed economies. And what you see as our flaws here, are our strengths that made us the greatest nation that has ever been.

    • “It is simply untrue that in March we were ignorant of the basic facts about covid19. Ioannidis did his Diamond Princess analysis in early March.”

      Yeah, let’s take the experience on one ship, the Diamond Princess, and extrapolate that to what… the US, the World.

      Yep. Let’s look at lessons learned.

      Chowell also looked at how effective the stringent containment measures introduced on the Diamond Princess were in reducing the virus’s spread. From 5 February, passengers on the ship were confined to their cabins for two weeks or more.

      He and Kenji Mizumoto, an epidemiologist at Kyoto University in Japan, report in Infectious Disease Modelling3 that the day the quarantine was introduced, one person could go on to infect more than 7 others. The infection rate was probably quite high because people were living in close quarters and touching surfaces contaminated with the virus, says Chowell.

      What China’s coronavirus response can teach the rest of the world
      But after people were confined to their rooms, the average number of others to whom one infected person passed the virus dropped below one. This suggests that the quarantine averted a lot of infections, says Chowell. However, it wasn’t perfect: passengers could still infect their room-mates and crew members, he says

      https://www.nature.com/articles/d41586-020-00885-w

    • “…the US was only 32 days away from 100 million cases…”
      No. That’s silly and alarmist.
      We aren’t at war. We are in a full retreat. We are tired of your stupid games. We’ve seen it before. It’s not going to work.

      • Ragnaar: I said that when US lockdowns began: “the US was only 32 days away from 100 million cases – if doubling continued every 2.5 days.”

        It is despicable to quote someone out of context.

        My statement was a mathematic FACT extrapolated from the graph I posted. It is the reality that our policymakers faced. And huge lines of people trying to get into some NYC hospitals were on the news about a week after lockdowns began. So if policymakers locked down because of fear that hospitals would soon be overwhelmed, they were right. All these events are accurately document on my time course of the US pandemic.

        Two paragraphs later I said: “Of course, exponential doubling of cases every 2.5 days can’t go on forever. As fear grew, people’s behavior changed. It was already changing modestly before US lockdowns were announced.” However, the 100 million number is NOT absurd: It is based on the FACTS that about 30% of Americans were infected by the Spanish flu and COVID is actually more easily transmitted. Today, it is clear that the number of silent infections not being detected by PCR is significantly greater than the 50% included on my graph. If there were 10-fold more cases than we are detecting by PCR, today’s 5.5 million confirmed cases is already a total of 55 million total cases! There are 30 million cases of seasonal influenza every year. There is nothing absurd about an estimate of 100 million cases.

        What is absurd is making insulting comments without understanding the facts. This is what happens to people who let the “truth” for them be determined by political, religious or philosophical belief, not the scientific method and data. The growing disdain on both the left and right for experts is leading us into another Dark Age. The left believes from a few highly publicized and distorted incidents that our police are systematically killing blacks and proposes a new “Great Leap Forward” with the Green New Deal. Trump is rejecting all information inconsistent with his distorted view of the world as “Fake News”, firing Inspector Generals and officials who testified, and trying to prevent publication of Bolton’s book and warnings about his misleading tweets. Xi Jinping, Putin, Orban, Erdogan, and Trump have developed personality cults analogous to those of Mao and Stalin.

      • Frank –

        > Xi Jinping, Putin, Orban, Erdogan, and Trump have developed personality cults analogous to those of Mao and Stalin.

        I agree there is a Trump cult of personality. The definition of “analogous” can span a range, but even as I say that Trump’s cult following is quite an influential factor in the political context we’re in today, to analogize it to Mao or Stalin is way over the top.

        Fwiw, nor do I think that the political context for JInping, Putin, or Erdogon are closely similar to the Trump political context – as in each of those cases authoritarian state control is much more uniformly and pervasively advanced than here. Maybe with Orban the situation is more similar – but even there I think the significant degree of authoritarianism is more a warning than a direct comparison. I certainly find it quite concerning that people are allowing their cult-orientation to ignore the authoritarian warnings – as we see often in these threads.

        It’s particularly disturbing to see someone like David dismiss your analysis of the Covid situation without a counter-argument, but instead with an reference to your cultural perspective – as if having a German background is somehow relevant to simple facts. But with respect to recognizing a trend towards authoritarianism, I do think that your German background is likely to sharpen your insight when compared to Americans who tend to think that authoritarianism is a distant threat (although, of course, those who are disinclined to associate authoritarianism with Trump are many of those who were hand-wringing about the authoritarian state as recently as 4 years ago).

      • Frank –

        One more point on this…

        Trump’s complete lack of concern about nakedly lying is perhaps an aspect of authoritarianism where he ranks on a par with any other authoritarian leader. Trump simply doesn’t care whether everyone knows that he’s lying because (1) his cult members simply don’t care and (2), his larger objective isn’t so much that you believe him so much as it is that you’re unsure what it is that is true (and thus he can get away with saying anything).

        Im that sense, I think your analogy is just fine. And I don’t disregard the significance of a complete disregard for the truth.

        But in context, he lacks that ability to control state power on the same manner as the other authoritarians you mention – so in effect, his authoritarianism is more circumscribed. At least for now.

    • Joshua: I never should have mentioned the cult of various autocrats (including DT) in the comment you replied to, even though I criticized both left and right. For too many, a wall goes up and no information has a chance of penetrating. However, I am very concerned we may be entering another Dark Age where “truth” is determined by biases picked up during one’s life experience, not from facts, careful unbiased analysis of data and the scientific method (where applicable). There is a wonderful book written by Alice Dreger subtitled “Heretics, Activists, and One Scholar’s Search for Justice”, which I bought because the title reminded me of our Judy Curry. (The full title can’t be used at WordPress.) It’s much like Feynman’s Cargo Cult Science, but much vaster in scope. The author, a PhD in the history of science, spent a decade as an activist and was exiled as a heretic by her academic peers when her research led to conclusions they wouldn’t accept. Among other things, she writes: “Justice cannot be advanced by letting ‘truth’ be determined by political goals. Only people like us [academics], with insane amounts of privilege, could ever think it was a good idea to decide what is right before we even know what is true. Insanely privileged people like us, who never fear the knock of a corrupt police, could think that guilt or innocence should be determined by identity rather than by facts. Science – the quest for evidence – is not ‘just another way of knowing’.” (Dreger’s relatives lived in Communist Poland.) And she points out that democracy is founded on the idea that the average voter is capable of learning enough of the truth to elect better representatives and leaders than those rise to the top in other systems of government. That thought is terrifying, given our polarized traditional media, social media echo chambers, universities dominated by social justice warriors instead of scholars, and voluntary self-sorting that limits our exposure to other points of view. To make things even worse, a master indoctrinator comes along who makes it impossible for many citizens to learn anything his opponents, because voters have been trained to think “Lyin’ Ted Cruz” every time they hear Mr. Cruz’s name. And the same thing happens with “crooked Hillary” (“lock her up”), FAKE NEWS, Russia Hoax, the Deep State, RINOs and Never-Trumpers.

      Since I’ve always listened to dpy6629 about the limitations of computational fluid dynamics, I find it disturbing when he says we need to “agree to disagree” before establish what facts we can agree upon.

  93. The optimal decisions here involve trade-offs. I don’t want to trade to be Germany, China or South Korea in the virus death Olympics. I want the country where the money and creation of value is. Old people die and children are born. And the cycle continues. We’ve been told how important the nurturing phase is. It is. We don’t need to hold them back, and we don’t need their parents out of work wondering what Trump or Pelosi are going to do for their next cat fight. We have to choose the children. And we have to take some risks.

    We are strong, we are resilient. We aren’t in this to suck, give up and blame somebody. We are the greatest nation that has ever been. Let’s continue that.

    • Ragnaar wrote: “I don’t want to trade to be Germany, China or South Korea in the virus death Olympics… We’ve been told how important the nurturing phase is [for children]… we don’t need their parents out of work.

      Fine. Ignore the “virus death Olympics”. Germany, China and South Korea as also winning the back-to-school and back-to-work Olympics. I want the US to win in these areas.

      • “The huge discrepancy in unemployment rates can be traced back to Germany’s “Kurzarbeit” program. Short-time working protects jobs by allowing companies to reduce hours and wages, which are then subsidized by the state.” You should source your claim.
        Our unemployment is caused materially by government policies. There’s our resistance to opening schools. Waste on a level never seen before. Waste of potential. How’s South Dakota doing? It doesn’t matter what China does, their people gave up a long time ago.

    • Ragnaar: Your brilliance is astounding. I never realized that the absence of Germany’s Kunarzarbeit (a good idea) is the main reason why many Americans adults have lost their jobs and why kids aren’t going to school. I stupidly thought vulnerable Americans and Americans with vulnerable family members were VOLUNTARILY staying away from risking places where one is exposed to many potentially infectious people like: restaurants, gyms, bars, shopping malls, public transportation, public entertainment facilities, college dorms and classrooms. (Most colleges and schools have voluntary distance learning program even if they are open.) I thought they were afraid. And I thought their leaders were receiving daily reports from hospitals because they are afraid that, if everyone returns to normal activities, their hospitals could be overflowing with sick patients in a month. But no, you are telling me our only problem is our government policies.

      The authors of this editorial in the right-wing WSJ say you are wrong. Both work for AEI, a right-wing think tank. One was appointed by Trump to run the FDA. The other is AEI’s director of economic policy studies.

      https://www.wsj.com/articles/lifting-lockdowns-wont-fully-restore-the-economy-11597608016

      “labor demand retreated in a similar fashion across states, regardless of when a state imposed stay-at-home orders or how hard it was hit by the virus… Much of the job decline was in services industries. In many cases, it wasn’t closed schools that kept parents from going to work. It was consumers avoiding the retail and hospitality settings where people worked.

      “A team of economists including Kosali I. Simon at Indiana University studied the labor market from mid-March to mid-April and found that employment fell by 1.7 percentage points for every additional 10 days that a state imposed lockdown orders. They estimate that 60% of the employment decline between January and April was caused by policy. BUT THE REMAINING 40% WAS LIKELY DRIVEN BY CONCERN ABOUT THE VIRUS.”

      “Economists at Goldman Sachs estimate that consumer spending is at 94% of its previrus level. That’s progress—but AN ECONOMY WITH A 6-POINT HOLE IN CONSUMER SPENDING IS DEVASTATED.

      “THE LOCKDOWNS ARE LARGELY OVER, and consumers are still nervous and skipping activities they view as optional or too risky. The Goldman Sachs analysis finds that the personal-care industry—for example, spas and nail salons—is still at less than half its previrus level of activity. Transportation, including airlines, is at less than one-third of where it was before the virus.”

      “Lockdown orders kept many people from dining out, but people now debate whether to stay in a hotel or visit the dentist based on their own concerns of getting sick. Even if risk tolerance is increasing, THE ECONOMY IS LIKELY TO HAVE A RECESSION-LEVEL GAP DRIVEN BY REASONABLE FEARS OF COVID.

      “States are unlikely to reimpose lockdowns no matter how widely the virus spreads, and the Trump administration won’t turn to a “stay at home” strategy ahead of the election. THE FATE OF THE ECONOMY THIS FALL AND WINTER DEPENDS ON CONTROLLING SPREAD. That will turn on prudence in personal interactions, more widespread mask wearing, and extensive testing and isolation to keep the virus under control. If we fail in these efforts, we’re going to face a lot of tragic death and disease from Covid, the recovery will slow, and THE ECONOMY COULD TIP BACK INTO RECESSION.”

      While authorities are now closing few, if any, of non-educational businesses and activities, attending school is as risky as spending the 7 hours a day sitting in an indoor restaurant. And attending college may be as risky as being on a cruise ship. UNC Chappell Hill opened and closed 10 days later.

      Those winning your “Death Olympics” are also winning the “Economic Olympics” as well as the “Education/Nuturing Olympics”. You aren’t eligible to compete at the highest level in the latter without first qualifying in the former.

  94. No need to reach herd immunity –

    There’s a cure:

    https://www.axios.com/trump-covid-oleandrin-9896f570-6cd8-4919-af3a-65ebad113d41.html

    • Link to paper showing that about 20 ng/mL of oleandrin reduces SARS-CoV-2 growth by about an order of magnitude apparently without showing toxicity to the host cells at any concentration. That concentration might show useful antiviral activity in vivo. What they don’t discuss is that oleandrin has been investigated as an anticancer agent for many years and been tested in cancer patients. At 0.3 mg/kg/day – the maximum tolerated dose (ie a dose too high for elderly patients) – blood levels were only 2 ng/mL. Nor do they discuss how oleandrin can be toxic to cancer cells without showing any toxicity to the host cells in the antiviral assay.

      Never fear, Dr. Fauci can’t keep this effective medicine away from you. As a natural extract from the oleander plant, it probably can be sold at your local GNC without evidence of effectiveness and safety.

      https://www.biorxiv.org/content/10.1101/2020.07.15.203489v1.full.pdf
      https://link.springer.com/article/10.1007/s10637-014-0127-0

    • The pillow guy guarantees a cure.

      That’s good enough for me. Anyone who can sell that man pillows clearly knows better than any doctors or scientists.

  95. The Plan That Could Give Us Our Lives Back
    The U.S. has never had enough coronavirus tests. Now a group of epidemiologists, economists, and dreamers is plotting a new strategy to defeat the virus, even before a vaccine is found.

    https://www.theatlantic.com/health/archive/2020/08/how-to-test-every-american-for-covid-19-every-day/615217/

  96. –snip–

    Abstract
    Despite various levels of preventive measures, in 2020, many countries have suffered severely from the coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus. Using a model, we show that population heterogeneity can affect disease-induced immunity considerably because the proportion of infected individuals in groups with the highest contact rates is greater than that in groups with low contact rates. We estimate that if R0 = 2.5 in an age-structured community with mixing rates fitted to social activity, then the disease-induced herd immunity level can be ~43%, which is substantially less than the classical herd immunity level of 60% obtained through homogeneous immunization of the population. Our estimates should be interpreted as an illustration of how population heterogeneity affects herd immunity rather than as an exact value or even a best estimate.

    https://science.sciencemag.org/content/369/6505/846

    • Yes. This study (Britton et al) was published as a preprint over 3 months ago. As they say, it is merely illustrative. They only allow for differences in contact rates by age group (within and between age groups). There is only a crude, limited allowance, within each age group, for heterogeneity of individuals’ social connectivity (contact rates), and no allowance for heterogeneity in biological susceptibility. Hence it finding only a modest reduction from the classical herd immunity threshold.

  97. -snip-

    The epidemia package allows researchers to flexibly specify and fit Bayesian epidemiological models in the style of Flaxman et al. (2020). The package leverages R’s formula interface to paramaterize the time-varying reproduction rate as a function of covariates. Multiple populations can be modeled simultaneously with hierarchical models. The design of the package has been inspired by, and has borrowed from, rstanarm (Goodrich et al. 2020). epidemia uses rstan (Stan Development Team 2020) as the backend for fitting models

    -snip-

    https://imperialcollegelondon.github.io/epidemia/

  98. Matthew R Marler

    neutralizing antibodies in pts recovered from mild COVID-19

  99. Job well done!

    Sweden records highest death tally in 150 years in first half of 2020

    “In total, 51,405 Swedes died in the six-month period, a higher number than in any year since 1869, when 55,431 people died, partly as a result of a famine. ”

    https://www.theguardian.com/world/2020/aug/19/sweden-records-highest-death-tally-in-150-years-in-first-half-of-2020

    • Joe - the non epidemiologist

      Sweden’s population was 4.158m in 1869 with 55431 deaths
      Swedens population is approx 10.2m in 2020 with 51405 deaths.

      on a per capita basis – the 2020 deaths are approximately 38% of the 1869 deaths.

      your citation is from the guardian – Anyone who is following climate science knows the guardian is a pretty worthless for any thing related to science or basic math.

      • Sweden had more deaths than any recent years, apparently.

        Don’t know how that might compare %-wise. I’d imagine that with the potential for reduced deaths from other causes (e.g., traffic accidents) it may not be that much.

        The number of deaths and illnesses they’ve endured seems considerably higher than other Nordic countries, with little of any apparent economic benefit. Too early to really say. In terms of % of the total population, the differences prolly aren’t that huge – but these are all value judgements. Extrapolate to the scale of the US and the numbers seem rather significant. But again, these are value judgements. Seems that the general population in different countries tend towards different evaluations. Imagine what would happen in the US if public health officials decided that infected older people shouldn’t get ICU treatment, as public health officials seems to have decided in Sweden.

        But beyond all that, it’s very interesting (to me) how determined people are to use the deaths and illnesses to confirm their ideological biases. Cherry-picking and comparing unlike things worlds well for that. If you get my drift.

      • Joshua,
        “Imagine what would happen in the US if public health officials decided that infected older people shouldn’t get ICU treatment, as public health officials seems to have decided in Sweden.”

        I’ve no doubt that you are right, but that doesn’t mean the Swedish policy of not intubating most 80+ years who were critically ill with COVID-19 olds isn’t the better one on balance, depending on how one evaluates the options.

        After reading this study: https://doi.org/10.1111/jgs.15361, would you want to be intubated if you were seriously ill with COVID-19 and much if at all over 80 years old? Only 15% of 85+ aged people were discharged from hospital to home after intubation prior to COVID-19 appearing. The rest went to a nursing home or similar, many of them either never ceasing to require mechanical ventilation or having a severre functional disability.

        The study reports that seventy-four percent of older adults would not choose treatment if anticipated survival included severe functional impairment, and many would consider a state of serious functional debility worse than death.

        Moreover, the overall mortality rate for intubated 65+ year olds in that study was ~35%, whereas for intubated 65+ year olds with severe COVID-19 it appears to be substantially higher:73% in a study of critically ill COVID-19 patients in Wuhan (https://link.springer.com/article/10.1186/s13054-020-03098-9, Table 4). and ~55% in a Lombardy, Italy, study: https://doi.org/10.1001/jamainternmed.2020.3539

      • Nic –

        > I’ve no doubt that you are right, but that doesn’t mean the Swedish policy of not intubating most 80+ years who were critically ill with COVID-19 olds isn’t the better one on balance, depending on how one evaluates the options.

        I am in favor of an approach to end of life care along the lines of the Swedish approach. My partner is a hospice nurse and I have heard many stories about families that insist on using extraordinary measures with ill elderly people who have little chance of survival and virtually no chance of a quality life should they survive, measures which actually prolong the active dying process and likely cause undue suffering. I’ve had to make these decisions for the care of family members.

        My point was merely that such policies would never fly in this country. There is an irony here where many right-wingers are advocating for the types of policies that only a soshlist librul country would implement, apparently unaware that they’re soshlist librul policies, but instead because they feel compelled to favor one set of policies over another out of identity-aggressive or identity-dfensuve “motivations, ” and not because of the actual policies.

      • That said, some of the decisions in Sweden might be a bit extreme. I read that they don’t even provide oxygen treatment for infected elderly people, and don’t move them out of elderly care homes and into ICUs.

        It seems that their reason for these policies is to prevent cross-infection, which is a reasonable consideration, but I think these are complicated issues and is certainly possible to go to far in either direction. But my point again is that right-wingers have suddenly become huge fans of Swedish policies towards elderly care even as they seek to politically leverage the outcomes from similar difficult decisions, with respect to care for infected older people, made here by a politician they don’t like – Cuomo – because he’s a Democrat.

        That’s not to say that I necessarily think with hindsight, Cuomo made the right decisions, but that I think we should be aware that these are complicated decisions of choosing among sub-optimsl choices, and that hindsight is always 20/20 It’s unfortunate that people seek to leverage a pandemic and tragedy, and cynically use hatred based on political identity to reinforce their own sense of political identity

  100. > on a per capita basis – the 2020 deaths are approximately 38% of the 1869 deaths.

    Lol. Do you suppose the ability of doctors to treat ill people might have improved just a tad from 1869?

    You really specialized in comparing unlike things, don’t you?

    • Joe - the non epidemiologist

      “You really specialized in comparing unlike things, don’t you?”

      Joshua – your funny –

      I was pointing out the fallacy of comparing the total number of deaths in periods 150 years apart as if they were equal. Yet you missed that point.

  101. Nice to see real world analysis:

    > Confronted with a novel, aggressive coronavirus, Germany implemented measures to reduce its spread since March 2020. Requiring people to wear face masks in public places has, however, been a subject of controversy and isolating the effect of mask-wearing on the spread of COVID-19 is not simple. This column looks at the town of Jena and other German regions that introduced face masks before the rest of the country to see whether the requirement makes a difference in the number of new COVID-19 cases. Requiring face masks to be worn decreases the growth rate of COVID-19 cases by about 40% in Germany.

    https://voxeu.org/article/unmasked-effect-face-masks-spread-covid-19

    • Germany and France are surging in case counts and failing at testing (by Joshua standards). The US is conducting 2.25 tests per thousand people per day. France 1.2 and Germany 1.49. Which means the current surge in Germany and France is even higher than reported.

      The decision to not wear masks in the US was driven by expert advice from the CDC as reported to us by the mainstream media.
      USA Today, mid February, Anthony Fauci, skip masks and wash your hands.
      https://www.usatoday.com/story/news/health/2020/02/17/nih-disease-official-anthony-fauci-risk-of-coronavirus-in-u-s-is-minuscule-skip-mask-and-wash-hands/4787209002/

      • And you gotta love this:

        > Germany and France are surging in case counts

        US: 17,249
        Germany: 2,744
        France: 3,447

        Yesterday, US = @45,000 cases
        Germany = @1,600
        France = @4,000

        Reminds my why dear leader can say stuff like this and still have a cult following:

        > “The problem is … big surge in New Zealand, you know it’s terrible. We don’t want that.”

        He knows exactly how his cult followers think.

      • You have no idea what the surge in German cases is, they aren’t doing anywhere near the same amount of testing per capita and they aren’t wasting time, like in the US, using their testing to hunt down every asymptomatic 20 year old.

        What they are doing, according to the European media, is worrying about what their second wave will look like. Germany will be pretty good probably- more like Texas or Florida. France not so much, they’ll be more like Massachusetts or New York.
        And they’re worried for several big reasons- they have tightly packed cities served by public transit, they have more old people than the US, and their surge is because the population is less enthusiastic about following those regulations you are so enamored with. Either because Trump is really popular in Bremmen and Calais or because your narrative of a uniquely awful United States is wishful thinking.

      • > …like in the US, using their testing to hunt down every asymptomatic 20 year old.

        A bogus argument. I believe that you were one of the sadly deluded on here that were confidently saying that the recent surge in positive tests in the US was no big deal because it was all due to increased testing (with asymptomatic people and young people). It’s sad when people can’t learn from their errors – and often indicates a bias.

        Yes – Germany has a clue, and yes they can target their testing better than we can because they don’t have anywhere near the same level of community spread.

        Anyway, I think that this is what we should be doing. Unfortunately we don’t have the leadership to make it happen:

        https://www.theatlantic.com/health/archive/2020/08/how-to-test-every-american-for-covid-19-every-day/615217/

  102. Joshua standards? Evaluating testing on a per capita basis are “Joshua standards?”

    Perfect illustration of the cult mentality. Anyone who expects a reasonable metric, such as a per capita evaluation of testing for an infectious disease, us suspect. But only if using that metric doesn’t paint dear leader in a favorable light.

    Yes, on a per capita basis our testing relative to other countries has gotten better. We’re now only 19th worst in the world (despite our enormous wealth and reaorcs to being to bear), which reflects an improvement. In all fairness, we rank higher than that when compared to the most analogous countries – but that statistic is accompanied by a relatively high positivity test rate which is an important metric of the quality of our testing in proportion to the need – a need which is quite high in this country because of the unbelievably inept roll out and build up of testing. And of course, the relatively high rate of hospitalizations and deaths per capita likely reflect the failure in our testing paradigm as well as execution, and if course the relatively high rate at which those metrics are growing relative to other counties is key as well. As much as it is a good thing that our rate of testing is increasing, the fact that it is increasing now reksird to other countries is largely a function of a greater need here, which exists precisely because of past failures.

    And that despite the flat out lies that “anyone who wants a test can get a test” and the lies about testing capacity that were put out there by our highest officials in the county for months.

    And the fact that cult members absolutely refuse to expect any degree of accountability from their beloved leaders.

    • Yes, “Joshua standards.” Remember that Joshua believes that you are a “cult” member if you don’t agree that Trump is the worst Covid responder on the planet- nay, the worst at managing an epidemic in all human history – due mostly to his utter failure to test.

      The United States is testing twice as many people, per capita, as France today and over 1.5 times as many as Germany.

      Which, by Joshua standards, would make the leaders of France and Germany worse than the worst leader in history. And yet nobody says that. The reason nobody says that is because if the press bad-mouths Macron and Merkel they get populist parties in power. If they bad-mouth Trump they get Democrats.
      “Joshua standards” are the selective and inaccurate use of statistics – such as using case counts in places that aren’t testing compared to case counts where they are – to present a political narrative that has no relationship with reality but which achieves a desired election outcome.
      Therefore, leaders who perform badly (Macron in France and Cuomo in the US) will be rewritten as victors in the fight against the virus and those that perform average to well (Trump and Abbott in Texas) will be rewritten as failures via the selective use of statistics.
      Then next year they’ll use the same approach with global warming again in the hope that one day we can all have rolling blackouts like California.

      • Joe - the non epidemiologist

        Coumo’s success it the equivalent to putting the fire out after the building has burned to the ground.

        that being said – lets delete further political comments

      • > Remember that Joshua believes that you are a “cult” member if you don’t agree that Trump is the worst Covid responder on the planet-

        See, right there. A sign of a cult member is an inability to distinguish what I say from some kind of Trump-defensive strategy.

        What I’ve observed are the crazy and invalid arguments and the complete lack of ability to think that Trump should be held accountable for obvious errors and flat out lying.

        > The United States is testing twice as many people, per capita, as France today and over 1.5 times as many as Germany.

        We have a much greater need for testing at this point. To the extent that we’ve improved, that’s great. But the improvements have come after months of incompetence, failure, denial that testing is even important, and flat out lying.

        > Which, by Joshua standards, would make the leaders of France and Germany worse than the worst leader in history.

        See above. You see, again your cult-mentality driven need to reflexively idealize dear leader is the best explanation I can think of for such fallacious reasoning. What’s your explanation?

        > And yet nobody says that. The reason nobody says that is because if the press bad-mouths Macron and Merkel they get populist parties in power. If they bad-mouth Trump they get Democrats.

        ??? You think I have some kind of problem criticizing Macron or Merkle? Where do you get such nonse…oh, right, cult mentality…I forgot.

        > “Joshua standards” are the selective and inaccurate use of statistics – such as using case counts in places that aren’t testing compared to case counts where they are – to present a political narrative that has no relationship with reality but which achieves a desired election outcome.

        ??? What are you talking about. Look at the numbers of positive tests and hospitalizations and deaths in France and compare it to the US. Adjust for population size. Even at this point where France has trended worse recently, they’re still ahead in every reasonable metric after months of being better ahead by a wider margin.

        >Therefore, leaders who perform badly (Macron in France and Cuomo in the US)

        See – that’s exactly what I mean. I have acknowledged Cuomo’s errors – based on hindsight. But it’s fascinating that you are in the group who rationalize away the massive errors on a much greater scale in the US overall and the US as compared to France by absolving Trump of any responsibility even as you seek to hold Trump and Macro accountable for less than ideal results in NY or France.

      • er…Cuomo and Macron…

        The point being with Trump, it’s his underlings fault, with Macron or Cuomo they’re the ones responsible as the leaders.

        It’s like how Trump wins praise from cult members for eschewing “expert” advice even he wins excuses from cult members because he listened to “experts.”

        Or like how he wins praise for trolling “the media” and sympathy for being such a victim of “the media.”

        It’s a self-sealing mentality. All roads lead to dear leader being a dear leader.

        Remarkable.

      • The Lincoln Project today released a new ad reminding Americans who is actually responsible for the failed response to COVID. The ad, “Evil,” shows that Jared Kushner prioritized the President’s reelection above public health, ignoring testing from states with Democratic leadership, resulting in the loss of nearly 200,000 lives and counting.

        “The failed leadership of this administration is staggering from the top down,” said Reed Galen, co-founder of The Lincoln Project. “Playing politics with public health is disgusting enough, but ignoring early warning signs coming from testing in the most populous states in the nation simply because the states are run by Democrats is a level of evil that has, unfortunately, become commonplace in Trump’s America. More Americans have been killed due to the President’s lack of response in COVID than were killed in World War I, Pearl Harbor, Vietnam, or 9 / 11.”

        https://lincolnproject.us/news/evil/

      • “…Jared Kushner prioritized the President’s reelection above public health, ignoring testing from states with Democratic leadership, resulting in the loss of nearly 200,000 lives and counting.”

        We have a winner for most deranged take on Covid. Sorry Josh, you’re in second place now.

  103. @Nic Lewis

    Please note that more data from Stockholm regarding covid-19 immunity is now on the table. It indicates that T-cell immunity is more common than antibody immunity. See doctor Rushworth’s blog for more information.

    https://sebastianrushworth.com/2020/08/08/what-is-the-best-way-to-measure-rates-of-covid-immunity/

    • Hakan –

      I mis-nested my responses. See below. I suggest that you investigate more carefully before you use the term “T-cell immunity,” and before you compare it to antibody immunity.

      • “…misunderstanding of the state of the science.”

        It’s understood well enough to say, Go. Open it up.
        That’s what management does. They hear from all sides, take all the stakeholders into account and decide. And they don’t care what names they are called. Management. The commie Swedes understand that. Losers hide behind the scientists. They show fear to those they should not.

        So this same thing played out with our deployment of renewables. Management failed.

        Management is a lot easier to understand than Sweden’s maybe herd immunity, nowhere close to herd immunity, or not even herd immunity.

        So while the scientists cat fight, management decides. They are supposed to be in touch with those impacted by their decisions.

      • > It’s understood well enough to say,

        He’s wrong about the science at multiple levels. His understanding is based on not understanding the science about “T-cell immunity.” Look at what he says:

        > > Effective herd immunity has been reached in the United States.

        He says that based on “T-cell immunity.’ He’s wrong. He doesn’t understand. You can stick your head in the sand. It’s fully what I expect from you at this point. Sameold Sameold.

      • Are we just arguing semantics at this point? You highlight Todaro who says, We’re fine, get back to work.
        Effective herd immunity has been reached in the United States. Because whatever you want to call it, it’s tolerable. Like deaths from cancer. We can come up with outrage about why it’s not, but we have to move forward. We have to stop marching on our way towards being a bleephole country.

      • I’m highlighting someone who makes an inaccurate argument based on a misunderstanding of the state of the science.

        Sheece.

  104. Håkan –

    From that article:

    > As yet, no proper studies have been performed, to my knowledge, showing that antibodies give immunity to covid, and no studies have been done showing that T-cells give immunity to covid either for that matter. However, we know from experience of infectious diseases in general that an antibody response and/or a T-cell response usually means that you are protected from future infection, at least for a time, and often for a lifetime.

    This seems to me to be in error. Many people seem to be just drawing conclusions about “T-cell immunity” which is not supported by the evidence. The author of a recent Nature article which reports on T-cell findings, indicates that “immunity” conferred by T-cells is *not* an immunity to infection, but an immunity that may, I repeat may, reduce the severity of the response to an infection.

    https://twitter.com/profshanecrotty/status/1293344524731691008

  105. Also, related:

    –snip–

    Some have expressed hope that memory T-cells can provide immunity, and thereby hasten the spread of herd immunity and effectively stop COVID-19 spread even before a vaccine. But this is seen as unlikely by UCLA’s Dr. Yang as well
    as the La Jolla team.

    “The more likely hypothesis we like to entertain is you have a little bit of a head start because of this memory T-cell,” said Dr. Sette.

    Dr. Yang has begun a study looking at T-cell responses in patients who have recovered from COVID-19, “to better understand what responses might have helped them recover.” Next would be studies of patients currently hospitalized, quantifying the T-cell responses and looking for correlation with the course of the disease.

    Prodded to share his hopes, Dr. Yang foresees the possibility of a treatment to “modulate” T-cell response so as to increase effectiveness against COVID-19, and also a T-cell focused “vaccine” that likely could not prevent infection–the goal of an antibody vaccine–but would limit its severity.

    –snip–

    https://www.nbclosangeles.com/news/coronavirus/is-immune-memory-potentially-a-covid-19-silver-bullet/2411573/

  106. If anyone is wondering how Biden would have performed with Covid19, the Wall Street Journal reminds us today that we already know thanks to prior epidemics. And, as you probably suspected, the answer is “much much worse than the current administration.”

    “Former Biden chief of staff Ron Klain said at Texas A&M in 2019: “We did every possible thing wrong. Sixty million Americans got H1N1 in that period of time, and it is just purely a fortuity that this isn’t one of the great mass-casualty events in American history. [It] had nothing to do with us doing anything right; just had to do with luck. If anyone thinks that can’t happen again, they don’t have to go back to 1918. Just go back to 2009, 2010. Imagine a virus with a different lethality, and you can just do the math.”

    https://www.wsj.com/articles/the-obama-biden-virus-response-11597966209?mod=mhp

    If H1N1 had the same lethality as Covid 19, two million Americans would be dead. Oh, and after depleting the nation’s stockpiles for the H1N1 epidemic the Obama/Biden team never replenished it. They bungled an epidemic and left us less prepared for the next one. But, hey, at least they were “gree” (if you don’t count the doubling of gas and oil production they accomplished. In California today they are pondering the potential of a Biden presidency in the dark thanks to the rolling blackouts.

    • jeffnsails850: Arguably, the Obama administration learned something from H1N1. When Ebola came along, Obama asked many questions and set up an office in the NSC to keep him informed about the danger pandemics posed to national security. Obama concluded it made more sense to help fight Ebola in Africa to minimize the risk of it reaching the US.

      Biden’s aging mind and the foreign policy ideas he and his advisors pushed over many years suggest that Biden is unlikely to be as sharp as Obama. But nothing can be worse than a president that is deeply suspicious of all advisors except the most crass yes-men. Therefore, he is incapable of learning anything without hard experience and even then he (and his followers) often rejects that experience as FAKE NEWS

      • “…nothing can be worse than a president that is deeply suspicious of all advisors except the most crass yes-men.”

        A President that doesn’t have the cognition to make his own decisions is worse. Did you want him to bomb Iran? Everyone knows China is good and doesn’t mistreat people. There’s so much wrong with government, he’s what’s needed. You want the guy that the Republicans and the Democrats can’t control. We are supposed to be suspicious of government.

        It was the lowest of the low for Biden to blame 170,000 deaths on Trump. To obtain power based on that tragedy. People saw that. Some are Okay with it. At least we gained power. Silver lining.

      • “When Ebola came along….” the CDC knew it was a completely different animal than H1N1 and told the administration there was no chance it would infect 60 million Americans like H1N1 did.
        Which is why they chatted and put out press releases, but didn’t replenish the stockpiles.
        As for the security discussion- step one would have been travel bans. If the Obama/Biden admin put in place an epidemic plan centered on national security, why did they object when Trump followed the playbook and implemented travel bans? I mean, other than the obvious partisan reason.

    • Biden was the vice president, but he was not in charge of the Obama administration’s handling of the H1N1 pandemic. The epidemic happened three months into the Presidency when, by the way, the administration was dealing with another Republican Mess leftover from the Bush years. The H1Ni virus was not as lethal as coronavirus; hence, you can’t make up a bunch of “what if” numbers to conclude anything. Whatever (if anything) Obama failed to replenish Trump had three years to fix.

  107. another RCT of Remdesivir:https://jamanetwork.com/journals/jama/fullarticle/2769871?guestAccessKey=4b0cc833-548d-48a4-936d-bae68d144eef&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jama&utm_content=olf&utm_term=082120

    snippet: Findings In this randomized, open-label, phase 3 trial that included 584 patients with moderate COVID-19, the day 11 clinical status distribution measured on a 7-point ordinal scale was significantly better for those randomized to a 5-day course of remdesivir (median length of treatment, 5 days) compared with those randomized to standard care. The difference for those randomized to a 10-day course (median length of treatment, 6 days) compared with standard care was not significantly different.

  108. https://sebastianrushworth.com/2020/08/04/how-bad-is-covid-really-a-swedish-doctors-perspective/
    This author is Management material. He thinks like Management. Fear. Stop it. It’s not helping. It’s a tool of the Destroyers.

    • Yah. This guy doesn’t understand “T-fell immunity.”

      He leans on his expertise as a doctor and he doesn’t understand the basic medicine related to the disease.

      • Management material alright.

        Peter principle

      • joshua: Yah. This guy doesn’t understand “T-fell immunity.”

        What did he write that was in error?

      • J:

        It’s not a question of science. Claiming it is, is failed management. What is important? It’s that’s kind of question. Children are. The very things that made us great like our economy. Having jobs is important.

        Some have been playing a science fiddle while Rome burns. As CA moves towards more renewables, they keep calling people science deniers. The science deniers would give them cheap reliable grid power. Because it’s not about science.

    • I agree with you 100% “Management is a lot easier to understand than Sweden’s maybe herd immunity, nowhere close to herd immunity, or not even herd immunity.”

      • Because we deal with management all the time. Or some of us are management at least part of the time. In our role as parents. When you prepare a family budget, management.
        Our management has been terrible and that includes Trump and the cowering Republicans. But they were and are more correct than the Democrats. But it was primarily the Governors. Those people should not blame Trump. That’s adding another fail.

  109. Matthew –

    > What did he write that was in error?

    > > However, we know from experience of infectious diseases in general that an antibody response and/or a T-cell response usually means that you are protected from future infection, at least for a time, and often for a lifetime.

    https://sebastianrushworth.com/2020/08/08/what-is-the-best-way-to-measure-rates-of-covid-immunity/

    That isn’t what virologists say about “T-cell immunity” and Covid. They say that it may, I repeat may, make infections less serious but isn’t likely to prevent infection. They have said that what this guy has said is a misperception.

    This, also, suggest he doesn’t know what he’s taking about.

    > It is quite possible to have T-cells that are specific for covid and thereby make you immune to the disease, without having any antibodies

    He says “quite possible.” That could mean that he knows what he’s talking about but is being careless or deliberately misleading. I go with doesn’t know that he’s talking about.

    • Joshua: He says “quite possible.” That could mean that he knows what he’s talking about but is being careless or deliberately misleading. I go with doesn’t know that he’s talking about.

      You don’t like withholding judgement in the face of uncertain or conflicting information. It isn’t a strength.

      • Matthew –

        > You don’t like withholding judgement in the face of uncertain or conflicting information. It isn’t a strength.

        Actually, the good doctor is the one who isn’t withholding judgement.

        He says:

        >> > However, we know from experience of infectious diseases in general that an antibody response and/or a T-cell response usually means that you are protected from future infection, at least for a time, and often for a lifetime.

        That is wrong, plus he isn’t withholding judgement.

        After which he says:

        >> It is quite possible to have T-cells that are specific for covid and thereby make you immune to the disease, without having any antibodies

        He says “quite possible” without noting that people who actually know the subject say it is unlikely. This is after he says that T-cells “usually” mean you are PROTECTED FROM INFECTION. ”

        So, again, he’s either being unclear or being deliberately misleading, or he doesn’t know what he’s talking about despite leaning on his expertise as a doctor. I go with he doesn’t know what he’s talking about – but I’m withholding a firm conclusion because it’s hard to know for sure which is the case. He could just not be clear in his writing or deliberately misleading.

      • I will note, also, that “immune to the disease” is a bit vague. It could mean that you have an immune response – meaning your body is more effective at fighting an infection as opposed to meaning that you won’t get the disease because you are immune. As the experts note, “immunity” is a complicated subject that people often don’t understand well (and which is uncertain with respect to covid).

        But given that he earlier said “you [usually] are protected against future infection” it seems that he meant that you won’t get infected – which virologists say is not likely the case.

  110. The precautionary principle. We tried that approach. By borrowing trillions of dollars and trying to tank our economy. We wanted to shut down schools until we found the voters didn’t want that, because it’s safer. But it’s not safer. Because of all of the spin-off damage. Shutting down schools is a transferring the safety of the whole to a few. Because a few in context will be safer, the rest of us will have to be less safe when taking into account all the costs that go along with that stupidity. It’s like trying to save a butterfly from global warming. How much does that cost? Ask California. Now how do you think the bunkered old people are doing without power and with wildfires in California? We have to save that butterfly.

  111. Pingback: COVID Seasonality, Latitudes, and the Winter Ahead | Sacred Cow Chips

  112. Pingback: COVID Seasonality and Latitudes | Sacred Cow Chips

  113. We now have the first confirmed case of a reinfection. This is an individual who has been infected twice – by two different identified strains of SARS COV2. The rules of the game – and the endgame – have just changed.

    https://www.euronews.com/2020/08/24/hong-kong-man-becomes-first-patient-reinfected-with-covid-19-say-researchers

    • Thanks, Paul. Let’s assume that this research (preprint available at https://academic.oup.com/cid/advance-article-pdf/doi/10.1093/cid/ciaa1275/33681713/ciaa1275.pdf) is definitely correct.

      I don’t think that either the rules of the game or the endgame have really changed.

      This person had mild COVID-19 when first infected, and he may well not have generated many antibodies, if any, at that time. Alternatively, and perhaps more likely, they had decayed to undetectable levels by the time he was reinfected 3.5 months later, at which point he tested seronegative. Neither of these is unusual with mild infections.

      However, he very likely generated persistent memory T-cells as a result of the first infection. Although these may have been less effective at recognising the different strain of the virus with which he was infected, they nevertheless were able to prevent the infection developing into disease – his second infection was entirely asympomatic. That is what T-cells do: they prevent disease, not infection.

      It is unclear to what extent the man was infectious to others during the reinfection. That is obviously an important point. However, reinfection has only very rarely been detected; this is the first proven case. Maybe most previously infected people have more vigorous T-cell responses, able to prevent sufficient viral replication to occur for a positive result even from the very sensitive RT-PCR test. Or maybe this man encountered two strains that were unusually different.

      Since reinfection appears to be very rare, and not actually to cause disease, I don’t see why it matters much. Even if one can be infectious upon reinfection, if it is a rare event then I think it will have almost no impact on the effect of herd immunity, which causes reintroductions of the virus to die out (without first growing significantly), rather than not not occur.

      • Thanks Nic,
        “Or maybe this man encountered two strains that were unusually different.”
        I don’t think there is any doubt of that.
        The D614G S-protein mutation (G Clade) is clearly implicated in the second infection, as noted by the author. Numerous papers have now identified a transmission advantage in the 614G strains over the 614D strains (e.g. Zhang et al :“The D614G mutation in the SARS-CoV-2 spike protein reduces S1 shedding and increases infectivity”; Voltz et al “Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity”)

        It has also been noted that antibodies recovered from patients convalescing from the 614D strain are less effective in neutralising the 614G strain. (Hu et al: “The D614G mutation of SARS-CoV-2 spike protein enhances viral infectivity and decreases neutralization sensitivity to individual convalescent sera. “) The G-clade is dominant in Europe, but is now emerging in South East Asia, something already observed before this case of re-infection.

        I don’t think we can read too much into the fact that the young healthy male patient was asymptomatic, excepting his elevated CRP. He was perfectly capable of shedding the virus and transmitting it to a less healthy individual. Nor do we know if this is a low probability event, or if it is just the first confirmed case of many. The importance of the result is that it confirms definitively that no long term immunity is assured by having contracted the virus once. In the worst interpretation, it suggests that a population which has achieved herd immunity to one strain of the virus may become susceptible to a mutated strain in as little as 140 days. The finding also has negative implications for vaccine development, particularly for those vaccines which are targeted on the S-glycoproteins.

        There is perhaps some good news in all of this. Up to June, views on the mortality rates of the different clades were very mixed. Several authors pointed to large differences in between-country mortality rates which seemed to suggest that the G clade was more dangerous. Others, looking at in-country comparisons, found no evidence of a significant difference.

        However, things seem to have changed a lot over the last two months. There has been a lot of free movement in Western Europe, leading inevitably to a surge in COVID 19 cases – particularly in those areas which were previously only lightly touched. These new infections are mostly associated with the now dominant G clade. However, the number of hospitalizations and deaths are way below what one might predict from the rates observed in March and April. I had thought until recently that this was a natural consequence of a much younger, generally healthier population being infected, after the most susceptible in the population had already succumbed. But examination of mortality rates within age groupings suggests that this view is likely wrong. There is an alternative possibility – the virus in W Europe is a lot weaker than it used to be.

        Typically with viral mutations an evolutionary advantage is gained by having a more efficient transmission mechanism or by producing less severe symptoms, since the latter extends the infectious period for improved transmissibility. A very aggressive virus can be quickly identified before it has a chance to transmit. This is why, very commonly, viruses become more easily transmitted but attenuated over time. It may be that we are seeing a co-evolution process in action.

        Here is one plausible possibility for such:-
        https://www.medrxiv.org/content/10.1101/2020.08.23.20180281v1

        Our data, however, are not compatible with the concept that the D614G
        S-protein mutation by itself is sufficient to explain the epidemiological success of the presently predominant SARS-CoV-2 strain. The coevolution of the S-protein mutation with the P323L mutation of the RdRp is striking and appears to be crucial for the success of the viral strain…

        We provide a working hypothesis where the polymerase mutation attenuates the symptoms and severity of the infection, while the spike mutation improves the ability of the D614G spike variant to infect cells.
        Our present working hypothesis is as follows: the P323L RdRp mutation decreases the production of viral RNA and hence the severity of the disease and symptoms. Such a viral variant would be more difficult to detect but would also have a disadvantage with respect to transmission. The D614G S-protein mutation would allow the virus to be transmitted even by an asymptomatic individual because of its ability to infect cells more efficiently, which would allow the transmission of the disease even if only few virions are present. Taken together, our study demonstrates that the mutation D614G in S-protein has high infectivity in cellular systems and provides a structural explanation of this effect through molecular modelling.

      • Re: “I don’t think that either the rules of the game or the endgame have really changed.”

        Because you don’t understand immunology, infectious disease, evolutionary biology, epidemiology, etc., despite all your bluffing:

        “You’ve made multiple confused, invalid comparisons. I’m not going to waste my time demolishing them.”
        https://judithcurry.com/2020/06/28/the-progress-of-the-covid-19-epidemic-in-sweden-an-analysis/#comment-920103

        You’re again distorting scientific fields you don’t grasp in order to fit your pre-determined, politically-motivated, false narrative. Curry can feel free to continue blocking my responses to protect you from criticism; my responses aren’t for your benefit nor for those credulous enough to still believe you on COVID-19.

        For example, take your statement below:

        Re: “Since reinfection appears to be very rare, and not actually to cause disease, I don’t see why it matters much. Even if one can be infectious upon reinfection, if it is a rare event then I think it will have almost no impact on the effect of herd immunity, which causes reintroductions of the virus to die out (without first growing significantly), rather than not not occur.”

        1) No, herd immunity depends on preventing infections. It’s calculated based on the assumption that virus-infected people are immune to re-infection and thus fail to spread the infection to others. From the perspective of herd immunity, if a mutated virus can re-infect people infected by the old virus strain, then the mutated virus is basically a new virus. So if the old virus strain infected 10% of people, when the new virus strain arises, the new strain starts from 0% infection, not 10%; it doesn’t count the percentage from the old strain (hence the influenza example I discuss in point 2, where we don’t rely on herd immunity between flu seasons). Yet you treat the mutated virus as starting from 0%, which makes no sense. This is another instance of you distorting on basic epidemiology. Also, herd immunity is tied to R0, which is about infections, not disease or deaths:

        “A plea: if you’re going to show data to argue for herd immnuity, show case data. There’s not some fixed number of deaths or hospitalizations that gets you to herd immunity. And it doesn’t matter if deaths are decreasing; if cases are increasing you aren’t close to herd immunity.”
        https://twitter.com/CT_Bergstrom/status/1294443485710360576

        2) You saying “reinfection appears to be very rare” utterly misses the point on the basic biology involved. SARS-CoV-2 mutates. So as time progresses, you’re going to get more mutants. That increases the chance that people previously infected will encounter a mutant that their immune response does not clear before infection. Moreover, though antibody titers remain elevated above limits-of-detection for several months, there’s a decent chance they’ll drop below the level of detection in some people on a time-scale of >6 months. That further increases the chance that people will fail to clear the virus, since antibodies (along with mucosal barriers and the innate immune system) are a primary way the body clears a pathogen before it can infect cells. Thus this increases the chances that more re-infections will occur overtime. So claiming re-infection is relatively rare now doesn’t mean it will be relatively rare in the future. Again, this is introductory-level immunology and microbiology.

        Hence why a number of vaccinations require booster shots. This is also one of the main reasons why, for example, new influenza vaccines are released and why we don’t rely on vaccine-induced herd immunity between seasons for influenza: in many people, the prior immune response is not enough to prevent re-infection with a mutated virus. Parallel point for other coronaviruses, including with respect to the prospects of cross-protection from them:

        “Human coronavirus reinfection dynamics: lessons for SARS‐CoV‐2”
        “Prior infection by seasonal coronaviruses does not prevent SARS-CoV-2 infection and associated Multisystem Inflammatory Syndrome in children”
        “Pre-COVID-19 humoral immunity to common coronaviruses does not confer cross-protection against SARS-CoV-2”
        “SARS-CoV-2 specific memory B cells frequency in recovered patient remains stable while antibodies decay over time”

        3) There have been number of other re-infection reports. For instance:

        https://www.vox.com/2020/7/12/21321653/getting-covid-19-twice-reinfection-antibody-herd-immunity
        https://dailyvoice.com/new-jersey/monmouth/news/central-jersey-doctor-reports-patients-reinfected-with-coronavirus/790555/
        “Recurrence of COVID-19 after recovery: a case report from Italy”
        “Is novel coronavirus 2019 reinfection possible? Interpreting dynamic SARS-CoV-2 test results through a case report”

        This is what happens, Lewis, when you throw around terms in fields you don’t understand, just to reach your politically-motivated conclusion that SARS-CoV-2-induced COVID-19 is not that bad (lest people support lockdowns you dislike). It’s why no reputable, peer-reviewed publications in immunology, epidemiology, virology, etc. would publish the sorts of claims you make. I’ve been discussing this particular topic for months, because anyone who actually understands immunology + infectious disease could sketch out a decent idea of where this was going. You couldn’t and you still can’t:

        May 15:
        “For instance, many people act as if the presence of higher virus-specific antibody titers is necessarily equivalent to immunity, including herd immunity. Antibody titers are good, rough metric to start with for immunity, but they’re not the sole determining factor of immunity. Take the following 2 examples:
        1) Vaccinations can result in the production of memory CD8+ T cells that kill virus-infected cells, without necessarily needing antibody production [possibly with indirect help from other immune cell populations, such as iNKT cells].
        2) Antibodies can fail to work by being non-neutralizing. Classic examples are antibodies for dengue viruses and HIV. In some cases the antibodies can make the condition worse, but I highly doubt that will apply for SARS-CoV-2, since it doesn’t seem to preferentially infect immune cells. Or the virus mutates, causing different variants of the virus in the population that are more resistant to the antibody.
        […]
        Applying the above points to HIT means that one can have a scenario in which HIT is higher than expected because:
        – antibodies are less effective at preventing disease than expected;
        – or vaccination / infection uses non-antibody, memory mechanisms to improve subsequent responses to the pathogen, and these mechanisms are less effective than expected;
        or the virus mutates to a form previously infected people are not immune to, and that mutated virus begins to make up a larger proportion of the viruses infecting people;
        – or…”

        https://archive.is/Xjyec#selection-15427.0-15451.7

        May 19:
        “Some related possibilities to consider:
        1) Recurrence of COVID-19: People who recover from COVID-19 might suffer from COVID-19 again, [ex: a mutated form of SARS-CoV-2 that’s more virulent than the strain they were initially exposed to]. That would undermine immunity and increase HIT.
        2) Recurrence of SARS-CoV-2 infection: People who recover from COVID-19 and have no detectable SARS-CoV-2 viral load, might then have their viral load increase again later. If that happens and even if these people were immune, they could still have enough virus to infect vulnerable people, undermining herd immunity and increasing HIT.”

        http://archive.is/47U5I#selection-17785.0-17799.299

        JC SNIP

      • Paul,
        Thanks. Interesting points. However, with of the order of 100 million people having been infected, many of them 5 to 6 months ago, the fact that only one person has so far been proven to have been reinfected does I think strongly suggest that it is a pretty rare event. I agree that might change with the passage of time and further mutations, but on the other hand new strains may produce sufficiently less severe disease for reinfection to be of much less concern – as may have happened with the OC43 coronavirus.

        Aren’t there other possible explanations for lower infection fatality rates over the last few months as well as the G-Clade producing less severe disease? What about seasonal effects (in the northern hemisphere) – infections in February/March may usually have faced a less strong immune system than those in June/July. And improvements in treatment, particularly in ICUs. It also seems possible that people who are particularly biologically susceptible to infection, and thus tend to get infected early on, are more likely to die from infection. Further, much of the switchover to the G-Clade appears to have occurred by early March, and most of it by late March, so shouldn’t it have had a major effect of the IFR during the first wave, with little resulting reduction of deaths after late April, contrary to what appears to be the case?

      • Paul – in fact, the vast bulk of SARS-CoV-2 infection in European countries was of the G-Clade (G614/L323 variant) from early in the epidemic (Fig. 5 of Ilmjarv et al., the paper you cited) There was and remains a small proportion of D614/P323 in the UK, Germany, Netherlands, Greece and Iceland but Spain is the only country where it represents a large minority.

        I haven’t see any evidence that COVID-19 has been a less severe disease in Europe or the Americas than in Asian coubntries where the D614/P323 variant still dominates (China/Hong Kong, Japan, Malaysia, South Korea, Thailand).

      • Paul,
        You say “I don’t think we can read too much into the fact that the young healthy male patient was asymptomatic, excepting his elevated CRP. He was perfectly capable of shedding the virus and transmitting it to a less healthy individual.”

        You may be right, but studies of household transmission seem to show that it is very much lower from asymptomatic than symptomatic cases (Madewell et al.: best estimate 0.7% vs 19.9%. https://doi.org/10.1101/2020.07.29.20164590.)

      • Nic,
        Forgive the long delay in my responding to your latest comments.
        You ask: “Aren’t there other possible explanations for lower infection fatality rates over the last few months as well as the G-Clade producing less severe disease? “ Yes, of course.

        I should start by saying that I see little evidence that the G-Clade produced less severe disease from its onset. The between-country data and between-region data, such as it is, seems to suggest that the G-Clade mutation at its onset produced, if anything, slightly worse outcomes in terms of severity and fatalities. I also agree with you that the “L323” variant was dominant in the G Clade in Europe from too early on to explain any attenuation of disease severity between March and August. (Its appearance with the defining 614G mutation was so common that some authors have treated this mutation as one of four base markers for G Clade definition, although the original GISAID definition included only three markers and excluded this mutation; see refs below.)

        There are however some hopeful indications that more recent mutations of the G-Clade, and particularly from the now dominant sub-variants GR and GH in Europe, are becoming attenuated through co-evolution towards lower viral severity.

        Back to your question. Yes, there are many possible reasons for seeing a reduced infection mortality rate, other than viral attenuation. In addition to your shortlist, there is also the likelihood that positive confirmed infection numbers are capturing a larger share of the COVID-19 true infected population, as test capacity increases in a relative sense. This may look like a dilution of disease pathogenesis.

        I have recently been looking at Swiss data to see if I could develop any confidence in distinguishing between the different influences on case numbers, hospitalisations, and deaths. Switzerland is of particular interest for three reasons:-
        1) Historically, Switzerland has a sharp peak in flu season within the last week in December and the first two weeks of January, probably coincident with maximum D deficiency and beneficial humidity conditions for viral transmission. COVID-19 did not hit until March 2020; hence we might expect seasonal influences on COVID 19 progression to be small.

        2) Switzerland infections from the outset were almost 100% G-Clade which mutated to dominant GR and GH sub-variants. The G Clade and its sub-variants GR and GH have grown to achieve a prevalence of around 90% frequency in Europe, with the GR clade in particular accounting for over 60% frequency by early August and still growing (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7427299/). If there is disease attenuation in Europe then we would expect to find its causation somewhere in recent haplotypes in the G clade sub-variants.

        3) Swiss health facilities did NOT become overwhelmed – although they got concerned about capacity in early April, when COVID-19 hospitalisations peaked at 2,240 patients.
        In addition to the above, the data is generally well maintained and accessible. On the downside, in terms of interpretation, Switzerland still permits off-label use of HCQ for early treatment of outpatients, and the extent of its use and effect is unknown.

        One of several easy experiments that can be done is to model hospitalisation records in Switzerland as a function of confirmed cases, as a proxy for measuring disease severity among the confirmed cases. I set up a simple model to match the profile of the number of hospitalised patients in time with the profile predicted from the record of confirmed cases – using as matching parameters the percentage of confirmed cases who were hospitalised and the average length of their stay in hospital before discharge or death. The model was matched to hospitalisation data from just the first wave of infections, and then used in prediction mode to estimate how many people should now be hospitalised given recent rises in confirmed case numbers. Under the assumption that disease severity among the population of confirmed cases remains unchanged from the first wave, the result suggests that there should be 5 to 6 times more COVID-19 patients in Swiss hospitals than there actually are today. So hospitalisation time for confirmed infected is way down against expectations from the first wave. Note that this result is independent of ICU treatment changes.

        We can also consider the question of whether the recent statistics are due to a generally younger population being infected. Here are comparisons of CFR data by age group for all Switzerland. Case numbers in the second column CFR are based on numbers up to 19th August with deaths recorded to present day:-
        Age 1st wave CFR 2nd wave CFR
        <50 0.08% .02%
        50-59 0.62% 0.47%
        60-69 3.4% 1.69%
        70-79 11.8% 3.98%
        80+ 28.6% 13.43%
        Total 6.3% 0.64%
        Since the magnitude of these reductions in CFR are unlikely to be explained by early treatment with HCQ, we are left with just two possibilities:- either the recorded confirmed cases represent a healthier, more resistant population within each age group or there are haplotypes in Switzerland which represent disease attenuation relative to the first appearance of the infections.

        Can I now claim to have visited the “genomes of Zurich”? !!!

        I include the following refs for information. Note that the A23403G mutation leads to S-D614G, a defining marker for the G Clade, and the C14408T mutation leads to the RdRp P323L substitution.

        GISAID clade markers posted 4th July:-
        G: C241T,C3037T,A23403G includes S-D614G
        GH: C241T,C3037T,A23403G,G25563T includes S-D614G + NS3-Q57H
        GR: C241T,C3037T,A23403G,G28882A includes S-D614G + N-G204R

        Mercatelli et al 22nd July: “Currently, the G clade and its offspring, GH and GR, are the most common clades amongst the sequenced SARS-CoV-2 genomes, globally accounting for 74% of all world sequences (Figure 5A). Specifically, the GR clade, carrying the combination of Spike D614G and Nucleocapsid RG203KR mutations, is currently the most common representative of the SARS-CoV-2 population worldwide. “
        Korber et al (2nd July and repeated 20th August):- “As an example, in this tree, the region from approximately 12:30 to 3 o’clock represents GISAID’s “GR” clade, defined both by mutations we are tracking in this paper that carry the G614 variant (the GISAID G clade, defined by mutations A23403G, C14408T, C3037T, and a mutation in the 5′ UTR (C241T, not shown here), and an additional 3-position polymorphism: G28881A + G28882A + G28883C. These base substitutions are contiguous and result two amino acid changes, including N-G204R, hence GISAID’s “GR clade” name…”
        And “…The earliest examples of sequences carrying parts of the 4-mutation haplotype that characterizes the D614G GISAID G clade were found in China and Germany in late January 2020, and they carried 3 of the 4 mutations that define the clade, lacking only the RdRp P323L substitution (Figure S5D).”

    • Joe - the non epidemiologist

      A) this re-infection seems to be a one-off, or just maybe somewhat of a fluke.
      B) the individual while infected was not sick – So his immune system did what it was supposed to do – keep him from getting sick.

      This type re-infection has happened with many other viral infections.

      Getting re-infected but not getting sick is a probably a net positive.

      I wouldnt read too much into this case

  114. > Findings: We identified 40 relevant published studies that report household secondary transmission. The
    estimated overall household SAR was 18·8% (95% confidence interval [CI]: 15·4%–22·2%), which is
    higher than previously observed SARs for SARS-CoV and MERS-CoV. We observed that household
    SARs were significantly higher from symptomatic index cases than asymptomatic index cases, to adult
    contacts than children contacts, to spouses than other family contacts, and in households with one contact
    than households with three or more contacts.
    Interpretation: To prevent the spread of SARS-CoV-2, people are being asked to stay at home
    worldwide. With suspected or confirmed infections referred to isolate at home, household transmission
    will continue to be a significant source of transmission.

    2020.07.29.20164590v1.full.pdf

    • We’re maybe at the end of the first quarter.

      Lots we don’t understand.

      -snip-
      Coronavirus cases in some European countries are rising again, but with fewer deaths. For now.
      -snip-

      https://www.washingtonpost.com/world/europe/europe-coronavirus-spain-france-italy/2020/08/28/34c28f08-e7a7-11ea-bf44-0d31c85838a5_story.html

      While modeling the impact of heterogeneity seems valuable, I am unclear as to the practical value of drawing generic conclusions about “herd immunity.”

      “Herd immunity” and behavior don’t function independently of each other. Decreased infections as a result of increased immunity isn’t a fixed state. It depends on (and is a function of) behavior, and can change if behavior changes.

      Look at the current rate of infection in Sweden compared to Norway, Finland, Germany, or even Italy or the Netherlands.

      Some people are attributing the drop in rate of infections in Sweden to “herd immunity” as compared to those other countries. Maybe if Sweden was uniquely “un-locked down” as compared to those other counties the claim would make more sense – but it isn’t.

      There are way too many variables in play to draw conclusions about “herd immunity,” IMO. It’s one thing to construct a theoretical model that says that because of heterogeneity its possible to reach a HIT as low as 10% or 20%. ” It’s one thing to say that as you approach a HIT, transmission rates will drop. It’s quite another to try to reverse engineer from a relatively lower infection rate in one community relative to another, to attribute causality to “herd immunity.”

      Just too many variables, like mask-wearing in play.

      Seems to me that cross-country comparisons, at least at this stage with the amount of evidence we have, serves not much purpose other than to serve as fodder for confirmation bias in support of political predispositions. There are myriad explanatory or predictive variables in play, and they likely play out with an even more complex set of interactions that get impossibly complex when you mix in country- or culture-specific factors. Trying to compare outcomes in Sweden with the US as compared to Korea as compared to Italy as compared to…is really like herding cats, IMO.

      • I expect three at least waves almost everywhere unless a vaccine becomes available. That was case with 1918 epidemic. The reason is the natural tendency to relax control measures at personal and governmental level once infection rates start to decline. Whoever not infected in earlier waves are the victims in the next wave until herd immunity is reached, virus mutates, or some other factor intervenes.

      • Joshua

        Cases have edged up primarily due to increased testing. This is combined with the age range of those infected coming right down as the young socialise far more at clubs, raves, pubs etc and catch a very mild dose of the virus.

        Deaths however, at least in theUKM continue to fall.

        Tonyb

      • Tony –

        > Cases have edged up primarily due to increased testing.

        Yah, they said that here too. Or they said it was because more younger/asymptomatic people being tested. And then hospitalizations and deaths spiked almost exactly one month later (= lag in disease progress plus lag in reporting).

        I don’t doubt it could be a factor. I doubt it explains the whole patten. Could also be that the spread is concurrent with some greater degree or social distancing, meaning less “viral load” and thus less severe infections. Could be spread if less virulent version of the virus.

        Lots unknown.

      • Joshua

        The young are not concerned with social distancing. They crowd together in pubs and increasingly illegal raves, as nightclubs are still not allowed to open. It is such a well known route that to prevent it the govt has introduced £10000 fines for illegally organised raves.

        Very very few young die of the virus. Most don’t know they have it.
        The average age for deaths is 85
        Tonyb

      • Joshua

        You might be interested in this UK site

        https://lockdownsceptics.org/

        Note especially the third article about 99.9%

        tonyb

      • Tony –
        I’ve seen that website before. Unfortunately, it’s not very good quality (i.e., fake “skeptics” pushkng a political agenda) and it hasn’t improved since the last time I looked at it. From a couple of the articles thar fist pop up:

        > The main way we fight viruses is through T-cell responses, which kill virally infected cells. Interestingly, some studies have shown that up to 60 per cent of people apparently never exposed to Covid-19 still had T-cells that reacted to the virus – suggesting that you might not need to have had this virus to have protection from it.

        So there the vagueness suggests they’re not taking the issues seriously enough to take measures to be sure that people don’t misinterpret what “T-cell immunity” means: i..e., it may, I repeat may, help reduce the severity of infection (we just don’t know) but isn’t likely to protect against infection (leading someone to be infectious or ill, but less seriously ill).

        And then this:

        > Now that the Brazilian city of Manaus has confirmed that a coronavirus epidemic can go into spontaneous decline when around 20% of the population has developed antibodies regardless of lockdown or social distancing, the prospect of herd immunity is looking more achievable to many.

        Seriously? Cherry-pick, ignore the many localities that has serious spread after well-higher than 20%, and ignore all potential confounding variables to conclude that the only thing that could lead to decline in rate of infection in that community is “herd immunity?” Man, that’s some “skepticism” indeed.

        Did you actually read the articles with due skeptical diligence Tony?

      • Joshua

        I took the trouble to make the link as I thought you might be interested in the article I cite with a European perspective. Obviously I was wrong. I won’t bother any more.

        Tonyb

      • Joshua

        I made a simple comment and a link that I thought you might be interested in. there was no agenda because as you might have noticed I comment very rarely on these threads.

        I have no idea at all what your “point” was which is why I did not respond to it.

        I Also have no idea what theories you hold. As for masks I have serious doubts as to their value. The chief deputy medical officer admitted that just yesterday

        https://www.dailymail.co.uk/news/article-8676535/Jenny-Harries-says-face-coverings-evidence-not-strong.html

        I would observe that the vast majority of people do not wear them correctly, continually putting them on and off, rubbing their faces, touching surfaces, wearing old masks, stuffing them in their pockets, they engender an air of hysteria, that there is a real and present danger and prevent any return to normality.

        Masks are not a natural thing in western society and our own visits to shops are very fleeting and for essentials only as we do not wish to browse when wearing them

        Tonyb

      • Joshua
        “I’ve seen that website before. Unfortunately, it’s not very good quality (i.e., fake “skeptics” pushkng a political agenda) and it hasn’t improved since the last time I looked at it.”

        Sure, Lockdown sceptics has some low quality information, but it also has a lot of decent quality information.

      • Tonyb
        Please don’t let sniping from Joshua put you off commenting.

      • Tony –

        I posted this above:

        https://voxeu.org/article/unmasked-effect-face-masks-spread-covid-19

        From what I’ve seen, the body of evidence isn’t dispositive – but this is about harm reduction and risk mitigation. Evidence of some level of improper use is insufficient evidence – particularly when it’s your or anyone else’s anecdotal evidence – to come to certain conclusions as offered in that “lockdown skeptics” drecky article. They provide no serious attempt to weight the evidence from different sides. You may find that useful, I don’t.

        There’s is a wide body of evidence in support of mask-wearing as having some level of net benefit. From my viewpoint, there is less scientific evidence running in the other direction. But even if I’m wrong about the relative size of the evidence in each direction how do you explain an article such as that one at “lockdown skeptics,” that ignores all conflicting evidence? Why do you value a website that publishes articles where zero attempt is made to evaluate conflicting evidence? In general, I’m against criticizing material simply because of the site from which it comes – but I would expect a serous website to at least refrain from publishing material that makes zero attempt to take a subject seriously.

      • Tony –

        And I’ll further note:

        > I took the trouble to make the link as I thought you might be interested in the article I cite with a European perspective.

        You didn’t only link a particular article, you lead with pointing me to the website itself:

        > You might be interested in this UK site

        >> https://lockdownsceptics.org/

        >>> Note especially the third article about 99.9%

        Then saying I should note a particular article.

        And my response was that the website it self is drecky. It publishes a lot of garbage. If you had merely pointed to the article itself than I might have commented on that article in itself but wouldn’t have dismissed it merely because it was published at a drecky website.

        As for that particular article, the age-related disparities in the fatality outcomes from Covid is well-known and widely addressed. Given that context, why did you find that particular article of particular note?

        Also –

        > I have no idea at all what your “point” was which is why I did not respond to it.

        The dreckiness of the two excerpts I quoted from the website – as examples of drecky stuff they publish there.

      • Joshua

        It was you that brought up masks. My link had been about the chances of surviving covid according to your age and morbidities.

        The link I then provided on masks directly quoted the chief deputy medical director of Britain. Is that a ‘drecky’ source?

        You don’t need to have a phd in maskology to be able to see how people use masks. I can not comment on the US experience but over here it does not remotely reach any sort of medically satisfactory level.

        Now I need to get my beauty sleep, goodnight Joshua
        Tonyb

      • Joshua

        Your second reply wasn’t there when I started writing my own. I pointed you to the lockdown site and specifically Suggested you noted a particular article which at the time was the third one.

        As you may not have noticed many articles can not be directly linked to but are contained in the body of the website itself. If I could have provided a direct link to the article itself I would have done so. Good night Joshua

        Tonyb

      • Tony –

        > You don’t need to have a phd in maskology to be able to see how people use masks.

        The problem is going from your or anyone else’s anecdotal observations to drawing conclusions about the effectiveness of masks. That some people might not use them in an ideal fashion doesn’t lead to a conclusion that mask wearing doesn’t provide a net benefit in the real world. That’s why I provided you a link to an article that studies real world outcomes f at a societal level from mask wearing. Do you have a comment on that article? Is there a reason why you would dismiss that analysis? Is there a reason why you think your anecdotal observations refute that evidence? Do you have reason to believe that your anecdotal observations disprove that analysis? Do you think it isn’t possible that despite your observations of sub-optimal mask-wearing by some people there would be a net overall benefit at a societal level?

        I know that’s a lot of questions, but they are directly related to the comments you’ve made.

        Yes, I pointed to a drecky article on mask-wearing that was published at a website you favor and recommended. I notice that you have subsequently commented on mask-wearing a couple of times, but still haven’t made any comments on the drecky article that I excerpted.

        And I notice that you still haven’t commented on the other drecky excerpt I posted from that website. Why is that, Tony?

        I’m actually trying to discuss the issues at hand. I notice that it is your habit to not engage with me when I try to do so. This sting of exchange is another example of that pattern. Why not take the opportunity to change the pattern?

        Finally, yes the UK public health official said that there isn’t particularly compelling evidence on either side. I will note that in your appeal to her authority you neglect to note that she is in a minority among public health officials if she doubts that there is likely a significant benefit to mask-wearing. I will also note that the drecky article assumed a rheticisl stance that the issue is settled and that wearing “face muzzles” is definitely harmful – which is a position that is NOT consistent with the UK health officials that you quoted.

        C’mon Tony – take the time to actually engage in the issues.

      • Tony –

        Maybe next you’ll point me to the interesting website, Gateway Pundit?

        -snip-

        The Gateway Pundit reported, that the coronavirus fatality rate reported by the liberal mainstream media was completely inaccurate and the actual rate more typical to a seasonal flu – the media was lying again.

        Doctors Fauci and Birx next pushed ridiculous and highly exaggerated mortality rates related to the coronavirus:

        ** Dr. Tony Fauci and Dr. Deborah Birx used the Imperial College Model to persuade President Trump to lock down the ENTIRE US ECONOMY.
        ** The fraudulent model predicted 2.2 million American deaths from the coronavirus pandemic
        ** The authors of the Imperial College Model shared their findings with the White House Coronavirus task force in early March.

        […]

        Today we now have empirical evidence that the WHO, Dr. Fauci and Dr. Birx were all wrong. They were charlatans. They lied.
        The CDC silently updated their numbers this week to show that only 6% of all coronavirus deaths were completely due to the coronavirus alone. The rest of the deaths pinned to the China coronavirus are attributed to individuals who had other serious issues going on.

        Also, most of the deaths are very old Americans with co-morbidities.

        “This week the CDC quietly updated the Covid number to admit that only 6% of all the 153,504 deaths recorded actually died from Covid

        That’s 9,210 deaths

        -snip-

        Trump says that his decisive actions saved some 5 million lives. His supporters repeat that rhetoric and defend it.

        The model didn’t “predict 2.2 million American deaths.’

        This is “lockdown skeptic” quality material.

      • Vast under estimates on the number of lives saved by Trump At least 20 million. Or more. And the whole suburbans too. And most of Africa. And nobody dies from it anyway. They all die because their heart stops. It is all heart attack not COVID. How can the flu kill anybody? It’s just a bad cold. Take an aspirin, drink plenty of liquid. Children especially like it. They actually feel better when they are sick. They laugh and play. It’s your fault if you die.

    • “There’s is a wide body of evidence in support of mask-wearing as having some level of net benefit.”

      Define benefit.

      Masks will slow the spread but not change the level at which HIT is reached. This seems a benefit only if medical facilities are over capacity in a particular area.

      • Rob –

        > Masks will slow the spread but not change the level at which HIT is reached.

        I will note that your apparently definitive conclusion is based on a reasoning that is actually highly speculative, and not even consistent with the research that speaks to the effect of heterogeneity on reachjng HIT. Behaviors affect heterogeneity.

        Further – changes short of altering the HIT could have effects such as reducing viral load and thus reducing the severity of reactiona to infections (and thus severity of disease) even if they don’t reduce the # of total infections (which, again you state as a certain conclusion but the evidence I’ve seen doesn’t support that certainty).

        And, of course, with improved treatments, slowing the rate of spread could reduce illness even if it didn’t alter the amount of ilness, # of deaths, and economic damage from the pandemic anyway. And with the potential of a vaccine, (or increased use of rapid antigen tests), slowing the spread could even lower the # of illnesses and deaths even if it doesn’t alter the HIT.

      • Joshua

        Delaying the spread allows time for development of therapeutics and vaccines. Delaying also allows for more time for economic and social hardships of living in a society under the threat a virus.

        Reaching HIT as quickly as possible without completely overwhelming the hospital system would seem to do the least total harm to a society.

      • Rob –

        > Delaying also allows for more time for economic and social hardships of living in a society under the threat a virus.

        Did you read what I wrote? More time at a lower rate of impact could equalize with less time at a faster rate. You have no evidence to show that economic damage from a faster, deeper spread will be smaller in the end than a slower longer one. It’s possible – but it’s possible that it would be greater. In particular with the advancement of treatments and the potential of a vaccine.

        If you want to compare Nordic countries, thus far it seems your argument isn’t well-supported. And extrapolating from them to the US is highly problematic anyway.

        > Reaching HIT as quickly as possible…

        Did you read what I wrote? Behaviors affect the speed with which a given locality will reach a HIT. I already said that. Why didn’t you respond to what I actually said?

        Further, wearing masks might reduce the severity of illness among those who get infected – so even if the same number were infected either way (which the evidence says is a highly speculative conclusion despite your apparent certainty), mask-wearing might reduce the economic impact and level of suffering AS WELL AS the stress on the health care system.

        Just repeating the same arguments by assertion without addressing counter-arguments seems to me like a waste of time, but it is certainly your prerogative.

      • “More time at a lower rate of impact could equalize with less time at a faster rate. You have no evidence to show that economic damage from a faster, deeper spread will be smaller in the end than a slower longer one.”

        Joshua
        What you write is nonsense-
        “More time at a lower rate of impact “could” equalize with less time at a faster rate”.
        More time of economic hardship and fear is never better unless there is overwhelming evidence that the additional harm is offset by greatly fewer deaths. You hang by a “could thread”

        “You have no evidence to show that economic damage from a faster, deeper spread will be smaller in the end than a slower longer one.”

        The evidence is obvious in that businesses are open that would have otherwise been closed and people, businesses and hospitals are no longer vastly altering processes due to the threat of illness.

      • Rob –

        > More time of economic hardship and fear is never better unless there is overwhelming evidence that the additional harm is offset by greatly fewer deaths. You hang by a “could thread”

        You’re ignoring the issue of differential *degree* of hardship from different rates of spread. As an example, Sweden as compared to its Nordic neighbors has had a much higher rate of spread, and thus much more illness and much more death as a result. Illness and death have economic cost. Unless the #’s equalize over time – and at the current rates it won’t even happen because Sweden is still seeing more spread than those other countries – then those costs won’t be equalized. And meanwhile, Sweden does not seem to have materialized economic benefit from that faster spread.

        Even if in the near future, Sweden starts experiencing significantly less spread and thus illness and death than their neighbors, it could take years or decades for those numbers to equalize

        The assumption that they have reached “herd immunity” relative to their Nordic neighbors seems to still be unproven, but even further are open questions about the contributions of behaviors to the relative rates of spread and whether and/or how they might affect the speed at which there’s some dramatic difference in outcomes as a function of reaching “herd immunity.” From what I’ve seen, they experienced roughly equivalent levels of behavior change along multiple metrics. They don’t seem to be significantly more opened-up now than their neighbors along multiple metrics.

        So all your assertions are merely that. And you are ignoring vast uncertainties in order to make these certain conclusions.

        You have no confirmatory evidence that quantifies what the differential economic impact of a faster trajectory towards “herd immunity.” We have some evidence, with Sweden, that the economic impact could be negligible or even negative if you consider the economic costs associated with greater death and illness.

        > The evidence is obvious in that businesses are open that would have otherwise been closed and people,

        We are seeing businesses opening and then closing because opening causes behavioral changes when it increases spread once again.
        Businesses open and then have to close because the conditions are unsustainable. We are seeing the same with educational institutions. And none of that speaks to the question of “herd immunity” anyway because we aren’t close to that and what the trajectory towards what the level of infections might look like is highly uncertain.

        > businesses and hospitals are no longer vastly altering processes due to the threat of illness.

        ? What? I don’t know where you live, but that’s certainly not true anywhere near where I live, and I live in one of the areas of the country with the highest rate of spread and thus, presumably and theoretically, are experiencing less spread as the result of having at least moved somewhat along the path towards “herd immunity.”

        At any rate, speculating is your prerogative. But I will continue to note when you confuse opinion with fact, especially when there’s a lot of evidence that contradicts your opinion.

      • Joshua writes:
        1. “You’re ignoring the issue of differential *degree* of hardship from different rates of spread.”
        More rapidly reaching HIT will result in a lower rate of “total hardship as there is vastly less long term social and economic hardship. To state otherwise is a made up assertion. The variables are therapeutics and vaccines.
        2. “Unless the #’s equalize over time “
        The #’s are likely to equalize over time but we are unlikely to know with any precision since testing methods and reporting processes on results have been so different in different areas.
        3. “Sweden starts experiencing significantly less spread and thus illness and death than their neighbors, it could take years or decades for those numbers to equalize”
        So Joshua is suggesting Sweden’s neighbors will have businesses and society impacted for years longer than Sweden? At what cost (both economic and social)?
        4. “So all your assertions are merely that. And you are ignoring vast uncertainties in order to make these certain conclusions.”
        See #1

        5. ”We are seeing businesses opening and then closing because opening causes behavioral changes when it increases spread once again.
        Businesses open and then have to close because the conditions are unsustainable.We are seeing the same with educational institutions.”

        We see business opening and then being closed again due to politicians making political decisions. If the rate of spread increases that is not critical as long as the hospital system in that region has not been overwhelmed. Hospital capacities should temporarily be increased to meet local requirements. Social distancing and shutdowns should only be implemented to keep the hospital system from being overwhelmed.

        Educational institutions are closed due to political reasons. Why can grocery stores and 7-11’s open, but it is to unsafe to open schools? Children who have a low risk of death being exposed allows an area to more rapidly reach HIT.

        6. “What? I don’t know where you live, but that’s certainly not true anywhere near where I live, and I live in one of the areas of the country with the highest rate of spread and thus, presumably and theoretically, are experiencing less spread as the result of having at least moved somewhat along the path towards “herd immunity.”

        Joshua–where do you live? I challenge you to show that the hospital system has been overwhelmed. The NY system was stressed but never overwhelmed, and it was the most heavily stressed in the USA.

      • Rob –

        > More rapidly reaching HIT will result in a lower rate of “total hardship as there is vastly less long term social and economic hardship. To state otherwise is a made up assertion. The variables are therapeutics and vaccines.

        I keep making a point related to that and you keep not responding to that point. No reason to continue.

      • Joe - the non epidemiologist

        As Rob Stated – “Educational institutions are closed due to political reasons. Why can grocery stores and 7-11’s open, but it is to unsafe to open schools? Children who have a low risk of death being exposed allows an area to more rapidly reach HIT.”

        Two important points –
        1) there is already an education gap – keeping schools closed will only make that gap – bigger – Much bigger
        2) Delaying and retarding the development of the childrens immune system will only have lasting detrimental effect on the younger generation.

        The IFR for covid is running approx 0.2-0.25%
        The IFR rate for the seasonal flu typically runs around 0.4 to 0.6%.

        the seasonal flu is significantly more deadly for the youth –

      • Joe –

        > The IFR for covid is running approx 0.2-0.25%

        What’s the evidence on which you’re estimating at a rate that’s 1/3 the CDC’s best estimate? As well as many other estimates?

        https://www.medrxiv.org/content/10.1101/2020.07.23.20160895v4

      • Joe –

        > The IFR for covid is running approx 0.2-0.25%
        The IFR rate for the seasonal flu typically runs around 0.4 to 0.6%.

        Really? You’re saying that the IFR for the typical seasonal flu is two to three times higher than for Covid? That one’s spectacular.

        I love how this claims that start out obviously wrong just get more and more wrong over time. That’s almost as good as Trump’s continuously elevating claims of how many lives he’s saved (I think it’s up to 5 million at this point) – although by virtue of reach he’s got you beat by a mile.

      • Joe –

        On the off-chance that you might be more open to the WSJ than other sources, I’ll offer you this link.

        https://www.wsj.com/articles/how-deadly-is-covid-19-researchers-are-getting-closer-to-an-answer-11595323801

      • Joe –

        I’m curious…

        > %
        The IFR rate for the seasonal flu typically runs around 0.4 to 0.6%.

        Given estimates such as this one:

        -snip-
        The world’s last flu pandemic was caused by the H1N1 virus, which spread around the world in 2009 and 2010. Studies of that pandemic found that at least one in five people worldwide were infected in the first year, and the death rate was 0.02 percent.
        -snip-

        On what basis do you reckon that the typical seasonal flu is some 20-30 times deadlier than it was in 2009?

        https://www.reuters.com/article/us-health-flu-who/world-must-prepare-for-inevitable-next-flu-pandemic-who-says-idUSKBN1QS1EP

      • jungletrunks

        Josh, You misrepresent Joe’s comment, no surprise, this is a recurring theme off yours.

        Joe’s reference is directed towards “youth” specifically. I’d pull the cork out of your ear to let the pickle brine out, but it’s too late for that.

        Joe’s comment:
        “Two important points –
        1) there is already an education gap – keeping schools closed will only make that gap – bigger – Much bigger
        2) Delaying and retarding the development of the childrens immune system will only have lasting detrimental effect on the younger generation.

        The IFR for covid is running approx 0.2-0.25%
        The IFR rate for the seasonal flu typically runs around 0.4 to 0.6%.

        the seasonal flu is significantly more deadly for the youth –”

        The CDC directs a mean IFR for the China flu of .064, per study by Gideon Meyerowitz-Katz, Lea Merone that they reference, with a bit of a caveat, as stated:

        “Based on a systematic review and meta-analysis of published evidence on COVID-19 until May, 2020, the IFR of the disease across populations is 0.64% (0.50-0.78%). However, due to very high heterogeneity in the meta-analysis, it is difficult to know if this represents the true point estimate. It is likely that different places will experience different IFRs.” https://www.medrxiv.org/content/medrxiv/early/2020/05/27/2020.05.03.20089854.full.pdf

        CDC discussion:
        https://www.cdc.gov/coronavirus/2019-ncov/hcp/planning-scenarios.html#box

        For the seasonal flu, the high end reference range you post for IFR is .6%; the average IFR for the China flu is .64%, they’re approximately the same range.

        But to Joe’s point, shared by the educated and fair minded studious; the IFR for children is near zero.

      • trunks –

        First,

        > 2) Delaying and retarding the development of the childrens immune system will only have lasting detrimental effect on the younger generation.

        Children, like adults, are exposed to many vectors for contafens every day through the air they breathe and the food and water they ingest. It stands to reason that less interaction with other kids will reduce their exposure to contafens but I haven’t seen evidence that it will do so to the extent that the absolute % of reduction, or limits to particular types of contafens, will measurably diminish their “immune system.” development. Seems to me that the relative reduction might not be that significant in comparison to the overall rate of exposure that will continue independent of them attending school. Do you have some evidence to point to?

        That said, I don’t doubt in the least that kids not attending school in person will have detrimental effects and increase the magnitude of disparities. I consider it to be a very complex balancing act.

        Second,

        > Joe’s reference is directed towards “youth” specifically.

        Yah – I didn’t read his reference to IFR as applying to youth in particular. I thought he was referring to AN overall IFR aggregating all ages. So if I read him wrong, apologies. If it was with specific reference to “youth, ” I’d actually be very surprised that the numbers would be that high – for covid OR the seasonal flu. Of course. Much would depend on the working definition of “youth.” Do you have a reference to show those 0.2%, and 0.4%-0.6% for IFR in youth for covid and seasonal flu, respectively?

      • jungletrunks

        A typo in my haste, using the same CDC range of COVID for the high end for seasonal flu, which is a third of that; but the essential point is that for children the IFR for COVID is negligible, certainly less than seasonal flu.

      • trunks –

        >… they’re approximately the same range.

        You don’t seriously believe that, do you? The seasonal flu IFR is generally cited as around 0.1%. That has been widely publicized. And there are a lot of credible analyzes that explain why that estimate is probably high.

        https://twitter.com/ChristoPhraser/status/1233738443756384259

        Not only that, Covid is much more infectious and there’s no vaccine (yet).

        Why do you bother posting such dreck?

      • trunks –

        Tell the truth – do you write for “Lockdown Skeptics?”

      • Josh, I know it escapes your neuron, but subject is centered on youth; kids statistically are at much less risk having COVID than if they had the flu. This is the point being made that you continue to obfuscate. https://www.dailywire.com/news/cdc-director-threat-of-suicide-drugs-flu-to-youth-far-greater-than-covid and as a specific example https://www.cdc.gov/flu/spotlights/2012-2013/children-flu-deaths.htm

        Josh, you’re the type of ankle biting tsetse fly that will continue to exploit a self acknowledged error/riff because you thrive off of excretions from accidental causation, or otherwise. So you drone on here following the inept mauling of another poster; then wandering aimlessly from one denizen to another with nothing else better to do than suck.

        I might add tangentially, though it’s not the argument here; but there’s a propensity, especially with the MSM, to align COVID-19 with seasonal flu when comparing the IFR threat. I suggest a flu pandemic, not seasonal flu, is the better comp because COVID obviously is a rare pandemic. Death rates for a pandemic flu can be much higher than seasonal flu, a 20th century mean that includes the 1918 pandemic, with the few others that occurred during the century, would be a more useful comp, to serve as a better metric for how to prepare for pandemic events, more rare than seasonal flu. It doesn’t take a brain surgeon, which will be helpful to you here, to know why the MSM insists on using the ordinary seasonal flu metric to compare to COVID.

        How Is Pandemic Flu Different from Seasonal Flu?
        https://www.cdc.gov/flu/pandemic-resources/basics/about.html

      • trunks –

        > but there’s a propensity, especially with the MSM, to align COVID-19 with seasonal flu when comparing the IFR threat.

        I love your reflexive need to try to blame things you don’t like on the “MSM.”

        But I agree, only a moron would compare Covid to the seasonal flu. Let’s talk to Joe about that, eh?

        Anyway, thanks for the comment. It set this up perfectly.

        https://twitter.com/realDonaldTrump/status/1237027356314869761

      • trunks –

        > but there’s a propensity, especially with the MSM, to align COVID-19 with seasonal flu when comparing the IFR threat.

        I love your reflexive need to try to blame things you don’t like on the “MSM.”

        But I agree, only a m*ron would compare Covid to the seasonal flu. Let’s talk to Joe about that, eh?

        Anyway, thanks for the comment. It set this up perfectly.

        https://twitter.com/realDonaldTrump/status/1237027356314869761

      • It doesn’t require trying to report on the self-evident MSM.

      • Jungle trunks

        Here is the latest copy of lockdown sceptics that Joshua is so scathing about

        https://lockdownsceptics.org/

        There are several articles by highly respected commentators, several well written opinion pieces and one about the apparent persecution and fining of the brother of former labour leader whilst those organising BLm marches and XR protest merely get A warning

        Is there anything you can see there deserving of Joshua’s scorn who after all regularly links to such places as the Washington post, believing they have credibility

        Tonyb

      • Tony,

        “respected commentators”

        Toby Young authored the first article.

        You’re in danger of appearing ridiculous.

      • Tony –

        > so scathing about…

        “So scathing?”

        I called it drecky, because you recommended it. Apparently you think it’s of high quality.

        Well, along with my description of “drecky” I punted out why I assigned that adjective – by pointing out the dreckiness in multiple articles posted there.

        I notice that despite repeated invitations to do so, you have still failed to respond to the dreckiness of those articles. Not a word in response despite you responding a number of times related to the website.

        But you’re right. I shouldn’t have responded on the quality of the website and merely acknowledged your reference and taken it into consideration that you think a website that publishes dreck is worthy of recommending. It’s kind of stupid to just comment on a website and makes much more sense to focus on the actual material that it publishes. Just because it publishes some dreck doesn’t mean that it can’t offer anything of value.

        So why then why don’t you respond to my numerous invitations for you to respond on point with respect to the specific aspects of the arcticles I discussed? I would appreciate the courtesy.

        Then you can withdraw you comment about the WaPo in the same spirit, and instead point to which aspects of which of the articles I referenced that you think are deserving of criticism? That would offer a better chance of being productive, don’t you think?

      • And Tony –

        > Is there anything you can see there deserving of Joshua’s scorn

        Maybe instead of asking trunks to weigh in you could respond to my explanations for why those particular articles I mentioned were drecky?

        After all, I’ve asked you to do so repeatedly. Why haven’t you responded? You even said you weren’t clear on which points I asked you to respond to and you still haven’t done so. Why not? Should I point out yet again which points I’m talking about?

      • HI VTG

        Glad to see you are well and posting responses to your usual standard.

        The first article is by Will Jones not by Toby Young who I would have thought you would have respect for bearing in mind his campaign for free speech

        Next is from the New York Times Third item is a graph from generally available data, next from the Guardian and Toby Young then the always interesting ‘Postcard’ series from local observers.

        We then have an article from the former Asst general Sec of the UN then one from a Harvard Prof.

        As always there are some opinion pieces or reflections on modern life. Surely you can not dismiss them all? Perhaps you didn’t have time to read them before you wanted to set mouse to pixel?

        tonyb

      • Thanks for the link, Tony, I’ve never visited the site till just now. I’ll review it more when I have time. It’s astonishing how BLM marxists are coming alive globally. Sorry that Western Europe will now see just how forceful the exploitation of race through socialistic racism can be leveraged. Proven grounds for Marxists.

      • Tony,

        The first article that came up for me was by Toby Young.

        I’m really not interested beyond that, life is too short.

      • This Toby Young?

        -snip-
        He imagines a type of “progressive eugenics” that would “discriminate in favour of the disadvantaged”. It would do so by offering a form of (as yet unavailable) embryo intelligence screening, “free of charge to parents on low incomes with below-average IQs”. This would help reverse the otherwise “inevitable” consolidation of each social class around a similar genetic profile.
        -snip-

        OK. Interesting.

        And according to Wikipedia he “initiated” “Lockdown Skeptics?”

        OK.

        Well, if true I certainly can see why Tony would recommend Toby’s work product. After all the dude was a judge on Top Chef for 5 freakin’ seasons.

      • Good evening Joshua

        I suggest you read about the eugenics theories of Arrhenius which are much more disturbing than those of Toby young.

        By your criteria of dismissing the work of those who have touched on such a subject it will come as a relief that you will never again reference Arrhenius or the greenhouse theory.

        Tonyb

      • Tony –

        > By your criteria of dismissing the work of those who have touched on such a subject it will come as a relief that you will never again reference Arrhenius or the greenhouse theory.

        I’m suggesting that Toby’s views on public policy and social issues might be relevant to Toby’s views on… public policy and social issues.

        But you’re right. No need to worry about anyone’s views on anything… because Hitler.

      • You’re worth your weight in gold.

        “It would do so by offering a form of (as yet unavailable) embryo intelligence screening, “free of charge to parents on low incomes with below-average IQs”.”

        Toby Young.

        Intelligence screening has been practiced by humans for hundreds of thousands years with various degrees of success. And we as a people are as smart as we are because of that. In nature you’ll find some forms of intelligence and/or fitness screening. It’s evolutionary.

        Your quote says Offered, like a stranger offering candy to a child. And I suppose the parents are would exploited in some way you can think up. And there’s Planned Parenthood.

        https://designerbabiesrr.weebly.com/embryo-screening.html

        I think that all these new sciency abilities are leading us to a more moral situation overall.

        Saying Eugenics, is arguably a scare tactic, an I win button. If you accept the Democrat Party’s position on a certain subject, don’t play the Eugenics card.

      • > Saying Eugenics, is arguably a scare tactic, an I win button.

        Dude, it’s his term. You really see a boogeyman everywhere. Do you ever come out from under your bed? You seem scared an awful lot. I know it goes along with being a politically correct snowflake who wants to cancel people for using terms you don’t like, but sheece. It’s his own term!

      • Ragnaar –

        Be afraid. Be very, very afraid.

        -snip-
        “No,” Mr. Trump answered. “People that you haven’t heard of. They’re people that are on the streets. They’re people that are controlling the streets. We had somebody get on a plane from a certain city this weekend, and in the plane, it was almost completely loaded with thugs wearing these dark uniforms, black uniforms with gear and this and that. They’re on a plane.”
        -snip-

      • “Intelligence screening has been practiced by humans for hundreds of thousands years with various degrees of success”.

        Must explain how Trump made it through the screen. No doubt a class bias in the screening that explains how the second and third generation rich are so much more stupid than the first generation.

      • “It would do so by offering a form of (as yet unavailable) embryo intelligence screening, “free of charge to parents on low incomes with below-average IQs”.”

        My take is you’re damning him for saying the above. He said the magic words, canceled. Am I wrong about why you quoted what you did? You’re going to discount anything else he said, because he said magic words.

        Intelligence screening has happened for 100s of thousands of years and the results have been overall, good. Women may decide not to marry an idiot. Does that make them N#zis?

        Does suggesting they should do this make me a racist?

        You could explain why you brought the above quote up?

      • “Must explain how Trump made it through the screen.”

        He pulls a lot of people’s strings. That he can do that is a sign of intelligence. That one falls for it, is not a sign of intelligence.

        Who was the last one to beat his party (the Republicans), and then beat the other party (the Democrats) to become our President?

        He beat a bunch of intelligent people. Who as it turned out found that their intelligence betrayed them. Hillary Clinton is certainly intelligent.

  115. From WSJ 8/12/20 https://www.wsj.com/articles/fed-official-warns-pandemic-response-is-hobbling-economic-rebound-11597241418

    ““Limited or inconsistent efforts by states to control the virus based on public health guidance are not only placing citizens at unnecessary risk of severe illness and possible death but are also likely to prolong the economic downturn,” Boston Fed President Eric Rosengren said on Wednesday in a webinar with the South Shore Chamber of Commerce in Massachusetts.”

    “Mr. Rosengren said he expected the unemployment rate, which stood slightly above 10% in July, would be slow to decline given worsening public-health situations in some states that were quick to lift lockdown orders in May. Easing restrictions prematurely “hurt both the economy and public health,” he said.”

    “By contrast, Mr. Rosengren pointed to data on infection and death rates from Europe, which imposed tighter limits on commercial activity in the spring and has seen a stronger rebound in economic activity in recent weeks due to much lower infection rates.”

    Conclusion: A robust economic recovery requires us to suppress the pandemic – either naturally by approaching herd immunity (and we don’t know when that will happen) or by making it less likely that virus will be transmitted between people. There are many public health measures we can take or implement more effectively short of locking down businesses that will decrease transmission.

    • Joe - the non epedimiologist

      Rosengren – seems to be drawing incorrect conclusions from the data.

      The impositions or lack of impositions of stricter lockdowns, mask protocols, etc seemed to have far less effect on the spread and subsequent return to normalcy.

      the countries & regions that have returned to normal and/or are having much lower infection rates and death rates over the last few months are those countries and regions that had high infection rates and high death rates early.
      Sweden
      Spain
      UK
      France
      NYC/NJ

      • > the countries & regions that have returned to normal and/or are having much lower infection rates and death rates over the last few months are those countries and regions that had high infection rates and high death rates early.
        Sweden
        Spain
        UK
        France

        Sweden, France, Spain, and the UK all currently have much higher infection rates and have less returned to “normal” than many countries that never had very high infection rates.

        Your record on cherry-picking remains intact!

        https://www.washingtonpost.com/world/europe/europe-coronavirus-spain-france-italy/2020/08/28/34c28f08-e7a7-11ea-bf44-0d31c85838a5_story.html

      • joe the non epidemiologist

        Josh – I can never win the cherry picker award competing against you, cross or the washington post.

        Both you and the WP failed to mention the IFR is almost zero along with much milder cases.

        but I am not as good as you at cherry picking data

  116. A good description of how this country is a cluster f of a s show when it comes to testing:

    https://www.nytimes.com/2020/08/29/health/coronavirus-testing.html

    • Yes. Unfortunately, I think the same goes for all countries that use RT_PCR tests – which I fear is all or almost all of them.

      • I don’t understand why other countries haven’t picked up on the rapid antigen tests. The head Swedish epidemiologist has made public comments about the importance of testing at this point – seems that the rapid antigen tests would fit well with their approach. Same with countries like Korea that adapt more easily to a collective mindset that would fit with use of rapid tests that might be less accurate.

        I get group-think. I get the propensity in this country to adopt a regulatory mindset that stresses accuracy from an individual health perspective. I get that it takes a while to digest technical considerations and adapt in a fast moving environment. I get that the FDA mandate isn’t well-suited to a pandemic control orientation. But this is depressing.

        > The F.D.A. noted that people may have a low viral load when they are newly infected. A test with less sensitivity would miss these infections.

        I get that there are many unknowns about potential logistical complications. But inadequacies of the PCR testing approach has been readily apparent for months and the potential of rapid testing from an outbreak control perspective has also been clear for quite a while.

      • Nic and Tonyb,

        I agree that Lockdown Sceptics has useful and informative material. They also provide some much needed humor/sarcasm.

        There are a couple of other sites that I find informative:

        https://rationalground.com

        https://www.cebm.net/oxford-covid-19-evidence-service/

  117. https://twitter.com/atrupar/status/1300415126986731524/photo/1

    What more proof do we need that virus is innocious?

    • Ha! The day after Joe Biden suddenly discovers that his supporters have been rioting and looting for the whole summer, you pounce on Herman Cain for noting the drop in Covid cases.
      Good timing.
      Good luck.

      • jeff,

        You do know that Herman Cain died from coronavirus, don’t you?

        And, of course, the cases are going to drop now that Trump is counting them. I’m certain the pandemic will be all gone by November in his alternate reality. It’s practically all gone now to hear some explain it.

    • The virus is not as deadly as the mainstream media makes it out to be. This is true without regard to anything Herman Cain said or anything that happened to him.

      Was he right? Yes.

      Is he dead from the virus? Yes. His being dead or alive does not impact the truth of his statement.

      He could have said, I will not die from this virus. Then he would’ve been wrong.

      “What more proof do we need that virus is innocious?”
      Sample size of one.

  118. Why herd immunity to COVID-19 is reached much earlier than thought

    A month later, do we know that herd immunity to COVID-19 is reached much earlier than thought.

    • Yes, we do know that the usually quoted ‘classical’ herd immunity threshold (which follows from a simple SIR or SEIR type compartmental model), is excessive for a naturally occuring epidemic.

      That’s because it assumes population homogeneity in relation to mixing (which affects both susceptibility and infectivity) and in biological susceptibility. ANY differences in either of those two factors across the population will lower the HIT below the classical level. The scientific argument is about (or should be about) how much lower the actual HIT is.

      Note that the HIT is affected by population behaviour. Hence my focus on Sweden, to my knowledge the advanced economy where government restrictions are least onerous, have been most stable and behaviour is closest to previous norms.
      The HIT is also affected by how infective the virus (or other agent) is, which may vary, in particular with climatic conditions.

      • I’m not really sure what relevance for other countries you are claiming from Sweden, nor what evidence there is for behaviour being closest to previous norms.

        I work a lot with Swedes, and was chatting to a colleague who celebrated her 60th birthday last week.

        She had dinner with just three friends, rather than a big party she would normally have had. It was the first time she’d been into the centre of Gothenburg in 6 months, and she was surprised just how quiet it was and how many shops were shut.

        Another friend has had her father enter a care home during the pandemic. She is not allowed to visit.

        Almost everyone I interact with is working from home, rather than in offices as normal.

        I make no claim that this is absolutely representative, but it seems very unlikely from this subset that behaviour in general is at all close to previous norms. And I also think from UK experience where voluntary measures were tried to start with that they would not be so effective here.

      • VTG –

        > Almost everyone I interact with is working from home, rather than in offices as normal.

        Well, that’s part of it. “Normal” for Swedes means more social distancing. It means more working from home. It means much more ability to switch to working from home. It means more people living in single person households. It means fewer multi-generational households. It means fewer co-morbidities. It means better baseline health, better health habits and behaviors, better diet. It means better standard of living, higher SES. It means more access to daycare, fewer people who can’t afford healthcare. It mens lower % of demographics that correlate with more spread and poorer outcomes from infection. It means moving on a culture where prefilled are less individualistic and more easily integrate a collectivistic orientation towards public policy. It means more vacation time. It means a larger social safety net. It means more access to daycare.

        It means SOSHLISM!!!

        And apparently Sweden is not significantly more “normal” than its Nordic neighbors (one measure could be that it hasn’t suffered significantly less economic harm).

        You tell Swedes they need to stay 6 feet apart and they say “That close?!?!”

        Notice that Nic never addresses or adjusts for any of that when he extrapolates from Sweden to advocate for policies that would cause higher rates of death and disease (particularly among the poor and minorities) for other countries.

  119. Fellow at a conservative thinktank (American Enterprise Institute)
    Formere commissioner of the FDA in the Trump administration:

    Sweden Shouldn’t Be America’s Pandemic Model
    The Swedes aren’t close to reaching herd immunity. We need to continue to contain the virus spread.

    https://www.wsj.com/articles/sweden-shouldnt-be-americas-pandemic-model-11598822005

    https://twitter.com/ScottGottliebMD/status/1300202686038634501?ref_src=twsrc%5Egoogle%7Ctwcamp%5Eserp%7Ctwgr%5Etweet

  120. How long until the US catches up to Sweden in per capita deaths from Covid?

    https://ourworldindata.org/grapher/total-covid-deaths-per-million?tab=chart&time=2020-03-22..latest&country=SWE~USA

  121. COVID-19 deaths in Sweden are now very low – averaging 1.5 per day over the last fortnight. In the previous fortnight (change from 3 to 17 Aug) they averaged 3 per day. It looks to me that Sweden reached herd immunity quite some time ago.

    • Are there social distancing, crowd size controls, etc in place still in Sweden? If there are, then they have not likely reached herd immunity. They’ve just reached a level of immunity effective to control the number for the measures in place.

      • “They’ve just reached a level of immunity effective to control the number for the measures in place.”
        As Joe Biden voters say, Bingo.
        This is the moderate position. Is there risk? Yes. Can we eliminate risk? No. We are winners. We need to get back to doing that. If we want to drive the country into the toilet, my family and myself will be fine. But there are many others trying to get back what they had a year ago. That which was taken from them. Not by Trump voters.

      • They are talking about lifting restrictiins on crowd sizes (having attendance at sporting events) soon. Lifting restrictions on education.

        But baseline in Sweden means much more social distancing and social infrastructure that allows for less spread and severity of disease when compared to most other countries, and higher spread and less death even still than in comparable counties like their Notdic nieghbors.

        Notice Nic never accounts for that or even acknowledges it. Simple extrapolation from Sweden without controlling for variables is facile. So why does he do it? Interesting question.

    • And of course, while I’m listing the relevant considerations that Nic ignores, there’s this also:

      –snip–
      in Wuhan, life has gradually returned to normal since the metropolis of 11 million people in Hubei province lifted a stringent 76-day lockdown in early April. The city hasn’t reported any new cases since mid-May.
      –snip–

      https://cdn.cnn.com/cnnnext/dam/assets/200818130318-02-wuhan-water-park-1808-large-169.jpg

      So let’s recap. Nic reverse engineers from lower rates of infection and return to “normalcy” in Sweden…to conclude they’ve reached “herd immunity,” while ignoring the comparative rates of infection in many other countries that might serve as a control for his assumption of causality behind an association.

      Nic acknowledges that behavior affects heterogeneity, which affects the HIT, but then turns around and acts as if behaviors affecting heterogeneity is independent from affecting the HIT.

      Seems to me that decreased rate of infections as a result of increased immunity isn’t a fixed state. It depends on (and is a function of) behavior, and can change if behavior changes.

      • It’s appropriate that many ignore your snip.

        Why do you believe your own snip? Where does your faith in Chinese snip come from anyway? Ah yes, faith. Marx?

        It defies credulity that while the Wuhan virus infected the world in 76 days, that it can’t reinfect Wuhan’s metro population of near 20 million after a 76 day lockdown. Maybe interlopers trying to mingle with the Chinese COVID free are being shot on site at the city limits? Is anyone looking for trenches? Or a large parameter of carbon stain? Since we’re talking about China, maybe its citizens were inoculated, rather shoddily so as to not appear too clean; after releasing COVID upon the world. No cynicism is too great for China Ω

      • trunks –

        I don’t particularly trust reports out of China. But nor do I reflexively dismiss them merely because I’m ideologically motivated to do so. If you get my drift.

        Anyway, look at Korea, at Japan. There are many other examples as well to choose from where life has returned to various levels of “normality,” in the sense that Sweden has, with relatively less spread than there is there now, and with far, far less spread and death than there was over many months since the onset of the pandemic.

        Do you want to simplistically reverse engineer from those countries as well to assign causality to “herd immunity?”

        Cross-country comparison are very complex. There are many potentially confounding variables. Even after a few years of carefully assembled data it will be a tall order. Doing so now, with such preliminary data as we now have, is facile. All that much more so if you don’t even attempt to control for, actually fail to even acknowledge, the many confounding aspects.

      • trunks –

        And besides, my whole point is that a return to “normalcy” is relative. Returning to “normal” in Sweden would be very different to returning to “normal” in the US – and so we might expect vastly different outcomes as a result.

        Just as a return to “normal” in China would be different. With China, you fall into my trap – by pointing out that “normal” there isn’t the same as “normal” here, and so we would expect different results.

        Thanks for the assist. I’ll give you a half point from my overall score.

      • “I don’t particularly trust reports out of China. But nor do I reflexively dismiss them merely because I’m ideologically motivated to do so.”

        Josh in bed with strawmen. The Chinese are ideologically motivated for propaganda; you scratch your head that you should believe some of it that you can’t possibly quantify.

      • trunks –

        The Republicans/”skeptics”/”Lockdown Skeptics”/Democrats/etc. are ideologically motivated for propaganda…

        > you scratch your head that you should believe some of it that you can’t possibly quantify.

        Scratch my head? No, I don’t particularly trust any particular source. I don’t fid that confusing at all but basic common sense.

        Sorry, but I had to penalize you by that half point I just awarded you. I politely suggest you quit before you fall further behind.

      • Josh: “Scratch my head? No, I don’t particularly trust any particular source. I don’t fid that confusing at all but basic common sense.”

        Strawman redux.

        So why bother posting an article that you can’t possibly quantify as having any factual basis? It’s because you post the article with wanting faith. There can be no other credible rationale why you would bother posting it unless otherwise you believed it was factually quantifiable.

        You can take your points and stack them on the other one centered on top your head.

      • trunks –

        > So why bother posting an article that you can’t possibly quantify as having any factual basis?

        I didn’t say I couldn’t quantify whether it has any factual basis. I said I don’t particularly trust any source. I evaluate information from a variety of sources. I look at the entirety of information I’ve gathered and then I consider the various probabilities as best I can – with a recognition that my evaluation could be in error, and will always be influenced by my biases. I try to leave “trust” out of it.

        I posted the article, in part, so that you can do the same. I notice that you don’t offer any counter-evidenxe. Just an emotional response in the firm of an argument by assertion.

        If you choose not to engage in that kind of a process, and to just dismiss the information because you don’t “trust” the source, and only “trust” sources that along with you ideologically, that’s your prerogative.

        For me, “trust” is not particularly applicable here. IMO, if you “trust” a source you’re likely to run into trouble. Some think if you just judge a source because you don’t “trust” it.

        As we can see with you, “trust” is more than likely just an emotional response. And it will likely lead you into facile thinking. Thanks for the demonstration.

      • ” I look at the entirety of information I’ve gathered and then I consider the various probabilities as best I can – with a recognition that my evaluation could be in error, and will always be influenced by my biases.”

        Strawman tilt—abort, abort. Can he see it? Inquiring minds numbly await.

        A fuzzy edged reference, nothing to indicate veracity; you defend it implicitly as being entirely relavant, then require unbelievers to provide “counter-evidence” to disprove your faith. I’ve seen nimrods with sharper edges.

      • trunks –

        > then require unbelievers to provide “counter-evidence”

        I’m not “requiring” you to do anything. Clam down and breathe. You’ll be less confused.

        Do as you wish. I invited you to offer counter-evidence, as if you do, and it seems of some merit, I would be in your debt. Or you can continue to fantasize about my bathroom habits. Totally up to you, bro.

  122. > Herd Immunity Is Not a Strategy

    https://t.co/Ibh8E8Hkbp?amp=1

  123. > Lockdowns are too blunt a weapon against Covid
    Economic recovery depends on suppressing the virus but targeted interventions are what is needed

    https://amp.ft.com/content/1b0aa366-24e7-4c16-86db-0399b66c76a8?__twitter_impression=true

  124. So it’s interesting that right now, Sweden has less spread than Denmark and Norway, although not Finland.

    Somewhat less than Germany. Considerably more than South Korea, Japan..way more than Hong Kong, Taiwan. Vietnam has virtually no spread at all! New Zealand, after their HUGE! spike, is back down to about 5 cases per day in the 7-day average. Trump sure was right when he said we should all be glad we aren’t New Zealand!!!

    At any rate, IMO, anyone who is trying to evaluate a “herd immunity” approach by looking at cross-country states is basically setting themselves up for confirmation bias. Waaay too noisy, and waaay, waaaaay to early to tell, IMO.

    We’re maybe at the end of the first quarter of the bottom of the 2nd inning.

    • Rob –

      D*shonest?

      No, I wouldn’t call what Nic has been doing dishonest. I think that he does sophisticated analysis with a selective attitude towards uncertainty because he’s “motivated.”

      I think that making cross-country comparisons is fraught, and I have been saying that here for months. I have said over and over that at this point at least, drawing conclusions from such comparisons is more an exercise in confirmation bias than anything else. And Nic has ignored it whenever I’ve said that – and I would guess because he’s determined to support a particular conclusions.

      But the data are the data and it’s worth examining them at this point. And the data we have so far shows that people who think they can draw certain conclusions are wrong.

      Yes, I think that the comparative methods for collecting data absolutely must be taken into consideration before drawing conclusions with any certainty. But there are tons o’ confounding variables that likewise need to be taken into consideration – and even then we need to wait years to get a really clear picture. Much depends on further development of therapeutics, whether a vaccine is developed and distributed, and we certainly can’t reach solid judgements about the economic impact of policy choices, even if we can effectively control for cross-country variables (which I’m not at all sure we will be able to do with much precision), until after much time has passed and we can really see the economic impact over time. I am a HUGE believer in the importance of longitudinal data in order to examine causality. Cross-sectional data is highly insufficient, IMO.

      This is the top of the 2nd inning/end of the first quarter. Maybe.

      https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-926119

    • D*shonest?

      No, I wouldn’t call what Nic has been doing d*shonest. I think that he does sophisticated analysis with a selective attitude towards uncertainty because he’s “motivated.”

      I think that making cross-country comparisons is fraught, and I have been saying that here for months. I have said over and over that at this point at least, drawing conclusions from such comparisons is more an exercise in confirmation bias than anything else. And Nic has ignored it whenever I’ve said that – and I would guess because he’s determined to support a particular conclusions.

      But the data are the data and it’s worth examining them at this point. And the data we have so far shows that people who think they can draw certain conclusions are wrong.

      Yes, I think that the comparative methods for collecting data absolutely must be taken into consideration before drawing conclusions with any certainty. But there are tons o’ confounding variables that likewise need to be taken into consideration – and even then we need to wait years to get a really clear picture. Much depends on further development of therapeutics, whether a vaccine is developed and distributed, and we certainly can’t reach solid judgements about the economic impact of policy choices, even if we can effectively control for cross-country variables (which I’m not at all sure we will be able to do with much precision), until after much time has passed and we can really see the economic impact over time. I am a HUGE believer in the importance of longitudinal data in order to examine causality. Cross-sectional data is highly insufficient, IMO.

      This is the top of the 2nd inning/end of the first quarter. Maybe.

      https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-926119

    • My reply got sent to moderation

      What are you concluding here?

      To what degree can you compare the data from different areas/countries; given different collection and analysis methods?

      What accuracy have you applied to each countries data? Might the margin of error in each country have impacted either collection data or the analysis of such data have impacted your conclusions?

      It’s pretty dishonest to be making claims about specific countries performance relative to coovid-19 without also an analysis of a countries data collection processes don’t you think?

      • Rob –

        D*shonest?

        No, I wouldn’t call what Nic has been doing d*shonest. I think that he does sophisticated analysis with a selective attitude towards uncertainty because he’s “motivated.”

        I think that making cross-country comparisons is fraught, and I have been saying that here for months. I have said over and over that at this point at least, drawing conclusions from such comparisons is more an exercise in confirmation bias than anything else. And Nic has ignored it whenever I’ve said that – and I would guess because he’s determined to support a particular conclusions.

      • But the data are the data and it’s worth examining them at this point. And the data we have so far shows that people who think they can draw certain conclusions are wrong.

        Yes, I think that the comparative methods for collecting data absolutely must be taken into consideration before drawing conclusions with any certainty. But there are tons o’ confounding variables that likewise need to be taken into consideration – and even then we need to wait years to get a really clear picture. Much depends on further development of therapeutics, whether a vaccine is developed and distributed, and we certainly can’t reach solid judgements about the economic impact of policy choices, even if we can effectively control for cross-country variables (which I’m not at all sure we will be able to do with much precision), until after much time has passed and we can really see the economic impact over time. I am a HUGE believer in the importance of longitudinal data in order to examine causality. Cross-sectional data is highly insufficient, IMO.

        This is the top of the 2nd inning/end of the first quarter. Maybe.

        https://judithcurry.com/2020/07/27/why-herd-immunity-to-covid-19-is-reached-much-earlier-than-thought-update/#comment-926119

    • Dr. Robert Starkey

      The moderation filter is crap

      • https://ourworldindata.org/grapher/economic-decline-in-the-second-quarter-of-2020?year=latest

        I’ve been saying this all along.

        -snip-
        Notice too that countries with similar falls in GDP have witnessed very different death rates. For instance, compare the US and Sweden with Denmark and Poland. All four countries saw economic contractions of around 8 to 9 percent, but the death rates are markedly different: the US and Sweden have recorded 5 to 10 times more deaths per million.

        […]

        But among countries with available GDP data, we do not see any evidence of a trade-off between protecting people’s health and protecting the economy. Rather the relationship we see between the health and economic impacts of the pandemic goes in the opposite direction. As well as saving lives, countries controlling the outbreak effectively may have adopted the best economic strategy too.
        -snip-

        But to be fair, I’ve also been saying this all along:

        -snip-
        Clearly, many factors have affected the COVID-19 death rate and the shock to the economy beyond the policy decisions made by each government about how to control the spread of the virus. And the full impacts of the pandemic are yet to be seen.
        -snip-

  125. Swedish Policy Analysis for Covid-19

    -snip-
    Whether success of a strategy depends on the level of restrictions, is yet to be answered, but it is already evident that this correlation is not coherent; the sporadic association between repressive measures and mortality is yet confounded – a typical epidemiological phenomena – and many other factors, e.g., population density, healthcare and social care organization, household size, the proportion of vulnerable population groups and the elderly, lifestyle (e.g., smoking) and environmental (e.g., air pollution) risk factors, tourism and travelling patterns, even capability to reorganize working practices (remote work), will need to be taken into account to get a fuller picture.
    -snip-

    Gee, who would have thought of that?

    https://www.sciencedirect.com/science/article/pii/S2211883720300812

  126. Potential effects of the Sturgis mototcycle rally:

    http://ftp.iza.org/dp13670.pdf

    • Wow.

      -snip-
      confused –

      Weird. It showed up after a lag.

      Just to be clear – my basic reaction is that 410k is prolly too high. But I also know that’s just a gut reaction and gut reactions don’t stand up terribly well against careful analysis, in general.

      Anyway, check this out – on the impact of the Sturgis super-spreader event. Can’t we expect more super-spreading as we head into November?

      -snip-
      If we conservatively assume that all of these cases were non-fatal, then these cases represent a cost of over $12.2 billion, based on the statistical cost of a COVID-19 case of $46,000 estimated by Kniesner and Sullivan (2020). This is enough to have paid each of the estimated 462,182 rally attendees $26,553.64 not to attend. This is by no means an accurate accounting of the true externality cost of the event, as it counts those who attended and were infected as part of the externality when their costs are likely internalized. 29 However, this calculation is nonetheless useful as it provides a ballpark estimate as to how large of an externality a single superspreading event can impose, and a sense of how valuable restrictions on mass gatherings can be in this context. Even if half of the new cases were attendees, the implied externality is still quite large. Finally, our descriptive evidence suggests that stricter mitigation policies in other locations may contribute to limiting externality exposure due to the behavior of non-compliant events and those who travel to them.
      -snip-

      • oops – part of that was cut and pasted from a comment at another blog to a commenter called “confused.”

      • Joshua: Finally, our descriptive evidence suggests that stricter mitigation policies in other locations may contribute to limiting externality exposure due to the behavior of non-compliant events and those who travel to them.

        Only if there is a complete accounting of the costs of the stricter mitigation policies. Earlier mitigation policies effectuated postponed and cancelled medical care, which had health and monetary costs. So what might be advocated? Stricter enforcement of the mask requirement?

        Anyway, I thought that the study was intriguing, and worthy of a wider audience. To me, the Sturgis rally appears to have been benign. The idea that it cost $12B to treat a bunch of people who had predicted survival rates of about 99.95% is absurd. More detail of why it cost so much to treat the affected is required before a public policy change is instituted.

        What’s “benign”? (a) much less costly in lives than Gov Cuomo’s and Mayor de Blasio’s mistakes; (b) about on the order of a weekend of pro football attendance in the US; (c) much less than the evacuation orders in San Diego Co. during the Witch Fire of 2007 (500,000 people evacuated their homes temporarily, about 1/5 the population of the county.)

    • -snip-

      Not surprisingly, the internet lit up with “we told you so!” headlines and social media shaming and blaming. The huge figures immediately hit the “confirmation bias” button in many people’s brains. But hold up. There are lots of reasons to be skeptical of these findings, and the 266,796 number itself should raise serious believability alarm bells.

      -snip-

      https://slate.com/technology/2020/09/sturgis-rally-covid19-explosion-paper.html

  127. > Only if there is a complete accounting of the costs of the stricter mitigation policies.

    Whether or not it equalizes is one thing, it “may contribute” nonetheless.

    > Earlier mitigation policies effectuated postponed and cancelled medical care,

    You rightfully call for considering uncertainties when drawing conclusions above, but then just assume a differential effect on medical care from SIPs relative to a counterfactual were none took place.

    I posted above evidence that despite what many people have confidently concluded, economic damage, as yet at least, is not more strongly associated with SIPs than they are with spread of the virus. I see no reason why the same might not apply here; more spread could well have lead to more people not seeking medical care, at least for a period of time. We have evidence that people changed their behaviors dramatically before SIP orders were initiated.

    It would be interesting to see if medical impact was different in Sweden as compared to other Nordic countries. I wouldn’t be surprised to hear that it wasn’t.

    But sure, lots o’ unknowns

    > Anyway, I thought that the study was intriguing, and worthy of a wider audience. To me, the Sturgis rally appears to have been benign. The idea that it cost $12B to treat a bunch of people who had predicted survival rates of about 99.95% is absurd. More detail of why it cost so much to treat the affected is required before a public policy change is instituted.

    Maybe. The organization seems like a credible one for economic analysis.

    temporarily, about 1/5 the population of the county.)

    • Joshua: I posted above evidence that despite what many people have confidently concluded, economic damage, as yet at least, is not more strongly associated with SIPs than they are with spread of the virus. I see no reason why the same might not apply here; more spread could well have lead to more people not seeking medical care, at least for a period of time. We have evidence that people changed their behaviors dramatically before SIP orders were initiated.

      No reason why the same might not apply here is what I call a “definite maybe.”

  128. A study of transmission rate in Taiwan:
    https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2765641?guestAccessKey=b6d90c29-e0f1-4b33-8f18-172ff4897c29&utm_source=silverchair&utm_medium=email&utm_campaign=article_alert-jamainternalmedicine&utm_content=etoc&utm_term=090820

    snippet: Findings In this case-ascertained study of 100 cases of confirmed COVID-19 and 2761 close contacts, the overall secondary clinical attack rate was 0.7%. The attack rate was higher among contacts whose exposure to the index case started within 5 days of symptom onset than those who were exposed later.

    Meaning High transmissibility of COVID-19 before and immediately after symptom onset suggests that finding and isolating symptomatic patients alone may not suffice to interrupt transmission, and that more generalized measures might be required, such as social distancing.

    I have no idea how this relates to R0. 0.7% of 2761 is 19.3 so 100 cases produced 19 new cases; R0 ~ 0.2?

    • Joe - the non epidemiologist

      Taiwan, S Korea, Vietnam, Cambodia, Japan Laos , Hong Kong, Malaysia all have very low infection rates compared to Western Europe and North america.

      Granted those countries have higher rates of social distancing and mask wearing along with aggressive lock down & isolation of infected individuals,

      yet those measures cant come close to accounting for all of the differences, especially considering the higher population density , lower levels of sanitation (in some of the countries),

      Nic or Matt – any insight into whether it may be genetic or whether prior exposure to other corona viruses have created some higher level of immunity?

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